3300025815_3 - 10 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00001_3300025.. (original name was: 3300025815.a:Ga0208785_1010141)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS-like	1	3,410

c00002_3300025.. (original name was: 3300025815.a:Ga0208785_1008475)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	1	3,805

c00003_3300025.. (original name was: 3300025815.a:Ga0208785_1004552)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS-like,T1PKS	1	5,542

c00004_3300025.. (original name was: 3300025815.a:Ga0208785_1004049)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	T1PKS,NRPS	1	5,937

c00005_3300025.. (original name was: 3300025815.a:Ga0208785_1003443)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	bacteriocin,NRPS	1	6,529

c00006_3300025.. (original name was: 3300025815.a:Ga0208785_1000844)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	T1PKS	1	13,562

c00070_3300025.. (original name was: 3300025815.a:Ga0208785_1001055)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	NRPS,T1PKS	1	12,166

c00140_3300025.. (original name was: 3300025815.a:Ga0208785_1000975)

Region	Type	From	To	Most similar known cluster		Similarity
Region 140.1	T1PKS,NRPS	1	12,624

c00190_3300025.. (original name was: 3300025815.a:Ga0208785_1000035)

Region	Type	From	To	Most similar known cluster		Similarity
Region 190.1	betalactone	1	22,461

c00192_3300025.. (original name was: 3300025815.a:Ga0208785_1001262)

Region	Type	From	To	Most similar known cluster		Similarity
Region 192.1	bacteriocin	4,745	11,217

Region	Type	From	To	Similarity
Region 1.1	NRPS-like	1	3,410
Region 2.1	NRPS	1	3,805
Region 3.1	NRPS-like,T1PKS	1	5,542
Region 4.1	T1PKS,NRPS	1	5,937
Region 5.1	bacteriocin,NRPS	1	6,529
Region 6.1	T1PKS	1	13,562
Region 70.1	NRPS,T1PKS	1	12,166
Region 140.1	T1PKS,NRPS	1	12,624
Region 190.1	betalactone	1	22,461
Region 192.1	bacteriocin	4,745	11,217

No secondary metabolite regions were found in these records:: c00007_3300025.. (original name was: 3300025815.a:Ga0208785_1003430); c00008_3300025.. (original name was: 3300025815.a:Ga0208785_1002562); c00009_3300025.. (original name was: 3300025815.a:Ga0208785_1012201); c00010_3300025.. (original name was: 3300025815.a:Ga0208785_1012149); c00011_3300025.. (original name was: 3300025815.a:Ga0208785_1011872); c00012_3300025.. (original name was: 3300025815.a:Ga0208785_1011494); c00013_3300025.. (original name was: 3300025815.a:Ga0208785_1010833); c00014_3300025.. (original name was: 3300025815.a:Ga0208785_1011593); c00015_3300025.. (original name was: 3300025815.a:Ga0208785_1010775); c00016_3300025.. (original name was: 3300025815.a:Ga0208785_1010768); c00017_3300025.. (original name was: 3300025815.a:Ga0208785_1010744); c00018_3300025.. (original name was: 3300025815.a:Ga0208785_1010652); c00019_3300025.. (original name was: 3300025815.a:Ga0208785_1010544); c00020_3300025.. (original name was: 3300025815.a:Ga0208785_1006820); c00021_3300025.. (original name was: 3300025815.a:Ga0208785_1009154); c00022_3300025.. (original name was: 3300025815.a:Ga0208785_1007403); c00023_3300025.. (original name was: 3300025815.a:Ga0208785_1006607); c00024_3300025.. (original name was: 3300025815.a:Ga0208785_1003282); c00025_3300025.. (original name was: 3300025815.a:Ga0208785_1001607); c00026_3300025.. (original name was: 3300025815.a:Ga0208785_1002424); c00027_3300025.. (original name was: 3300025815.a:Ga0208785_1000470); c00028_3300025.. (original name was: 3300025815.a:Ga0208785_1002251); c00029_3300025.. (original name was: 3300025815.a:Ga0208785_1008596); c00030_3300025.. (original name was: 3300025815.a:Ga0208785_1006960); c00031_3300025.. (original name was: 3300025815.a:Ga0208785_1000494); c00032_3300025.. (original name was: 3300025815.a:Ga0208785_1007325); c00033_3300025.. (original name was: 3300025815.a:Ga0208785_1004141); c00034_3300025.. (original name was: 3300025815.a:Ga0208785_1000559); c00035_3300025.. (original name was: 3300025815.a:Ga0208785_1001367); c00036_3300025.. (original name was: 3300025815.a:Ga0208785_1003608); c00037_3300025.. (original name was: 3300025815.a:Ga0208785_1000336); c00038_3300025.. (original name was: 3300025815.a:Ga0208785_1003125); c00039_3300025.. (original name was: 3300025815.a:Ga0208785_1008299); c00040_3300025.. (original name was: 3300025815.a:Ga0208785_1003445); c00041_3300025.. (original name was: 3300025815.a:Ga0208785_1002627); c00042_3300025.. (original name was: 3300025815.a:Ga0208785_1000991); c00043_3300025.. (original name was: 3300025815.a:Ga0208785_1000767); c00044_3300025.. (original name was: 3300025815.a:Ga0208785_1000568); c00045_3300025.. (original name was: 3300025815.a:Ga0208785_1005237); c00046_3300025.. (original name was: 3300025815.a:Ga0208785_1001652); c00047_3300025.. (original name was: 3300025815.a:Ga0208785_1001254); c00048_3300025.. (original name was: 3300025815.a:Ga0208785_1005532); c00049_3300025.. (original name was: 3300025815.a:Ga0208785_1000557); c00050_3300025.. (original name was: 3300025815.a:Ga0208785_1000756); c00051_3300025.. (original name was: 3300025815.a:Ga0208785_1002331); c00052_3300025.. (original name was: 3300025815.a:Ga0208785_1007796); c00053_3300025.. (original name was: 3300025815.a:Ga0208785_1002821); c00054_3300025.. (original name was: 3300025815.a:Ga0208785_1011386); c00055_3300025.. (original name was: 3300025815.a:Ga0208785_1011187); c00056_3300025.. (original name was: 3300025815.a:Ga0208785_1002431); c00057_3300025.. (original name was: 3300025815.a:Ga0208785_1001492); c00058_3300025.. (original name was: 3300025815.a:Ga0208785_1000298); c00059_3300025.. (original name was: 3300025815.a:Ga0208785_1003075); c00060_3300025.. (original name was: 3300025815.a:Ga0208785_1000886); c00061_3300025.. (original name was: 3300025815.a:Ga0208785_1001284); c00062_3300025.. (original name was: 3300025815.a:Ga0208785_1001483); c00063_3300025.. (original name was: 3300025815.a:Ga0208785_1004546); c00064_3300025.. (original name was: 3300025815.a:Ga0208785_1010245); c00065_3300025.. (original name was: 3300025815.a:Ga0208785_1004928); c00066_3300025.. (original name was: 3300025815.a:Ga0208785_1003137); c00067_3300025.. (original name was: 3300025815.a:Ga0208785_1003712); c00068_3300025.. (original name was: 3300025815.a:Ga0208785_1004530); c00069_3300025.. (original name was: 3300025815.a:Ga0208785_1001630); c00071_3300025.. (original name was: 3300025815.a:Ga0208785_1007599); c00072_3300025.. (original name was: 3300025815.a:Ga0208785_1000237); c00073_3300025.. (original name was: 3300025815.a:Ga0208785_1010187); c00074_3300025.. (original name was: 3300025815.a:Ga0208785_1000507); c00075_3300025.. (original name was: 3300025815.a:Ga0208785_1004487); c00076_3300025.. (original name was: 3300025815.a:Ga0208785_1002298); c00077_3300025.. (original name was: 3300025815.a:Ga0208785_1000905); c00078_3300025.. (original name was: 3300025815.a:Ga0208785_1011584); c00079_3300025.. (original name was: 3300025815.a:Ga0208785_1006267); c00080_3300025.. (original name was: 3300025815.a:Ga0208785_1006676); c00081_3300025.. (original name was: 3300025815.a:Ga0208785_1003244); c00082_3300025.. (original name was: 3300025815.a:Ga0208785_1002835); c00083_3300025.. (original name was: 3300025815.a:Ga0208785_1006424); c00084_3300025.. (original name was: 3300025815.a:Ga0208785_1010404); c00085_3300025.. (original name was: 3300025815.a:Ga0208785_1000754); c00086_3300025.. (original name was: 3300025815.a:Ga0208785_1000990); c00087_3300025.. (original name was: 3300025815.a:Ga0208785_1000172); c00088_3300025.. (original name was: 3300025815.a:Ga0208785_1001753); c00089_3300025.. (original name was: 3300025815.a:Ga0208785_1002162); c00090_3300025.. (original name was: 3300025815.a:Ga0208785_1008252); c00091_3300025.. (original name was: 3300025815.a:Ga0208785_1009803); c00092_3300025.. (original name was: 3300025815.a:Ga0208785_1003263); c00093_3300025.. (original name was: 3300025815.a:Ga0208785_1000400); c00094_3300025.. (original name was: 3300025815.a:Ga0208785_1000024); c00095_3300025.. (original name was: 3300025815.a:Ga0208785_1003805); c00096_3300025.. (original name was: 3300025815.a:Ga0208785_1001775); c00097_3300025.. (original name was: 3300025815.a:Ga0208785_1003168); c00098_3300025.. (original name was: 3300025815.a:Ga0208785_1003765); c00099_3300025.. (original name was: 3300025815.a:Ga0208785_1006876); c00100_3300025.. (original name was: 3300025815.a:Ga0208785_1010458); c00101_3300025.. (original name was: 3300025815.a:Ga0208785_1001735); c00102_3300025.. (original name was: 3300025815.a:Ga0208785_1003239); c00103_3300025.. (original name was: 3300025815.a:Ga0208785_1001636); c00104_3300025.. (original name was: 3300025815.a:Ga0208785_1003272); c00105_3300025.. (original name was: 3300025815.a:Ga0208785_1002034); c00106_3300025.. (original name was: 3300025815.a:Ga0208785_1003670); c00107_3300025.. (original name was: 3300025815.a:Ga0208785_1007941); c00108_3300025.. (original name was: 3300025815.a:Ga0208785_1004389); c00109_3300025.. (original name was: 3300025815.a:Ga0208785_1002352); c00110_3300025.. (original name was: 3300025815.a:Ga0208785_1000561); c00111_3300025.. (original name was: 3300025815.a:Ga0208785_1006333); c00112_3300025.. (original name was: 3300025815.a:Ga0208785_1000198); c00113_3300025.. (original name was: 3300025815.a:Ga0208785_1004178); c00114_3300025.. (original name was: 3300025815.a:Ga0208785_1002170); c00115_3300025.. (original name was: 3300025815.a:Ga0208785_1003397); c00116_3300025.. (original name was: 3300025815.a:Ga0208785_1007974); c00117_3300025.. (original name was: 3300025815.a:Ga0208785_1000293); c00118_3300025.. (original name was: 3300025815.a:Ga0208785_1005572); c00119_3300025.. (original name was: 3300025815.a:Ga0208785_1002300); c00120_3300025.. (original name was: 3300025815.a:Ga0208785_1000467); c00121_3300025.. (original name was: 3300025815.a:Ga0208785_1002792); c00122_3300025.. (original name was: 3300025815.a:Ga0208785_1001725); c00123_3300025.. (original name was: 3300025815.a:Ga0208785_1000986); c00124_3300025.. (original name was: 3300025815.a:Ga0208785_1003401); c00125_3300025.. (original name was: 3300025815.a:Ga0208785_1006386); c00126_3300025.. (original name was: 3300025815.a:Ga0208785_1004677); c00127_3300025.. (original name was: 3300025815.a:Ga0208785_1001685); c00128_3300025.. (original name was: 3300025815.a:Ga0208785_1010274); c00129_3300025.. (original name was: 3300025815.a:Ga0208785_1000461); c00130_3300025.. (original name was: 3300025815.a:Ga0208785_1002097); c00131_3300025.. (original name was: 3300025815.a:Ga0208785_1001698); c00132_3300025.. (original name was: 3300025815.a:Ga0208785_1011051); c00133_3300025.. (original name was: 3300025815.a:Ga0208785_1001427); c00134_3300025.. (original name was: 3300025815.a:Ga0208785_1002778); c00135_3300025.. (original name was: 3300025815.a:Ga0208785_1003150); c00136_3300025.. (original name was: 3300025815.a:Ga0208785_1000884); c00137_3300025.. (original name was: 3300025815.a:Ga0208785_1003747); c00138_3300025.. (original name was: 3300025815.a:Ga0208785_1000760); c00139_3300025.. (original name was: 3300025815.a:Ga0208785_1008940); c00141_3300025.. (original name was: 3300025815.a:Ga0208785_1005474); c00142_3300025.. (original name was: 3300025815.a:Ga0208785_1004292); c00143_3300025.. (original name was: 3300025815.a:Ga0208785_1000046); c00144_3300025.. (original name was: 3300025815.a:Ga0208785_1002082); c00145_3300025.. (original name was: 3300025815.a:Ga0208785_1001942); c00146_3300025.. (original name was: 3300025815.a:Ga0208785_1008532); c00147_3300025.. (original name was: 3300025815.a:Ga0208785_1001170); c00148_3300025.. (original name was: 3300025815.a:Ga0208785_1000136); c00149_3300025.. (original name was: 3300025815.a:Ga0208785_1001496); c00150_3300025.. (original name was: 3300025815.a:Ga0208785_1003132); c00151_3300025.. (original name was: 3300025815.a:Ga0208785_1008704); c00152_3300025.. (original name was: 3300025815.a:Ga0208785_1012350); c00153_3300025.. (original name was: 3300025815.a:Ga0208785_1003352); c00154_3300025.. (original name was: 3300025815.a:Ga0208785_1000080); c00155_3300025.. (original name was: 3300025815.a:Ga0208785_1005994); c00156_3300025.. (original name was: 3300025815.a:Ga0208785_1000677); c00157_3300025.. (original name was: 3300025815.a:Ga0208785_1003135); c00158_3300025.. (original name was: 3300025815.a:Ga0208785_1008707); c00159_3300025.. (original name was: 3300025815.a:Ga0208785_1003418); c00160_3300025.. (original name was: 3300025815.a:Ga0208785_1000146); c00161_3300025.. (original name was: 3300025815.a:Ga0208785_1004182); c00162_3300025.. (original name was: 3300025815.a:Ga0208785_1009499); c00163_3300025.. (original name was: 3300025815.a:Ga0208785_1002049); c00164_3300025.. (original name was: 3300025815.a:Ga0208785_1007012); c00165_3300025.. (original name was: 3300025815.a:Ga0208785_1000059); c00166_3300025.. (original name was: 3300025815.a:Ga0208785_1010143); c00167_3300025.. (original name was: 3300025815.a:Ga0208785_1003112); c00168_3300025.. (original name was: 3300025815.a:Ga0208785_1008684); c00169_3300025.. (original name was: 3300025815.a:Ga0208785_1000348); c00170_3300025.. (original name was: 3300025815.a:Ga0208785_1004328); c00171_3300025.. (original name was: 3300025815.a:Ga0208785_1000765); c00172_3300025.. (original name was: 3300025815.a:Ga0208785_1006082); c00173_3300025.. (original name was: 3300025815.a:Ga0208785_1000831); c00174_3300025.. (original name was: 3300025815.a:Ga0208785_1003694); c00175_3300025.. (original name was: 3300025815.a:Ga0208785_1008072); c00176_3300025.. (original name was: 3300025815.a:Ga0208785_1009930); c00177_3300025.. (original name was: 3300025815.a:Ga0208785_1005569); c00178_3300025.. (original name was: 3300025815.a:Ga0208785_1000252); c00179_3300025.. (original name was: 3300025815.a:Ga0208785_1000463); c00180_3300025.. (original name was: 3300025815.a:Ga0208785_1007416); c00181_3300025.. (original name was: 3300025815.a:Ga0208785_1007769); c00182_3300025.. (original name was: 3300025815.a:Ga0208785_1000082); c00183_3300025.. (original name was: 3300025815.a:Ga0208785_1008864); c00184_3300025.. (original name was: 3300025815.a:Ga0208785_1003956); c00185_3300025.. (original name was: 3300025815.a:Ga0208785_1000275); c00186_3300025.. (original name was: 3300025815.a:Ga0208785_1004322); c00187_3300025.. (original name was: 3300025815.a:Ga0208785_1001459); c00188_3300025.. (original name was: 3300025815.a:Ga0208785_1000232); c00189_3300025.. (original name was: 3300025815.a:Ga0208785_1000105); c00191_3300025.. (original name was: 3300025815.a:Ga0208785_1002080); c00193_3300025.. (original name was: 3300025815.a:Ga0208785_1009257); c00194_3300025.. (original name was: 3300025815.a:Ga0208785_1001895); c00195_3300025.. (original name was: 3300025815.a:Ga0208785_1004495); c00196_3300025.. (original name was: 3300025815.a:Ga0208785_1005749); c00197_3300025.. (original name was: 3300025815.a:Ga0208785_1005856); c00198_3300025.. (original name was: 3300025815.a:Ga0208785_1006619); c00199_3300025.. (original name was: 3300025815.a:Ga0208785_1007846); c00200_3300025.. (original name was: 3300025815.a:Ga0208785_1009239); c00201_3300025.. (original name was: 3300025815.a:Ga0208785_1001052); c00202_3300025.. (original name was: 3300025815.a:Ga0208785_1006369); c00203_3300025.. (original name was: 3300025815.a:Ga0208785_1004894); c00204_3300025.. (original name was: 3300025815.a:Ga0208785_1001622); c00205_3300025.. (original name was: 3300025815.a:Ga0208785_1006530); c00206_3300025.. (original name was: 3300025815.a:Ga0208785_1006727); c00207_3300025.. (original name was: 3300025815.a:Ga0208785_1006827); c00208_3300025.. (original name was: 3300025815.a:Ga0208785_1007231); c00209_3300025.. (original name was: 3300025815.a:Ga0208785_1007410); c00210_3300025.. (original name was: 3300025815.a:Ga0208785_1009549); c00211_3300025.. (original name was: 3300025815.a:Ga0208785_1007504); c00212_3300025.. (original name was: 3300025815.a:Ga0208785_1007544); c00213_3300025.. (original name was: 3300025815.a:Ga0208785_1007715); c00214_3300025.. (original name was: 3300025815.a:Ga0208785_1007284); c00215_3300025.. (original name was: 3300025815.a:Ga0208785_1000331); c00216_3300025.. (original name was: 3300025815.a:Ga0208785_1008511); c00217_3300025.. (original name was: 3300025815.a:Ga0208785_1008381); c00218_3300025.. (original name was: 3300025815.a:Ga0208785_1010574); c00219_3300025.. (original name was: 3300025815.a:Ga0208785_1001576); c00220_3300025.. (original name was: 3300025815.a:Ga0208785_1008529); c00221_3300025.. (original name was: 3300025815.a:Ga0208785_1005367); c00222_3300025.. (original name was: 3300025815.a:Ga0208785_1009866); c00223_3300025.. (original name was: 3300025815.a:Ga0208785_1006657); c00224_3300025.. (original name was: 3300025815.a:Ga0208785_1009929); c00225_3300025.. (original name was: 3300025815.a:Ga0208785_1000537); c00226_3300025.. (original name was: 3300025815.a:Ga0208785_1010353)

Compact view

c00001_3300025.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 3,410 nt. (total: 3,410 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00002_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 3,805 nt. (total: 3,805 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 3805:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_1

Search NORINE for peptide: strict or relaxed

AMP-binding (192..598): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00003_3300025.. - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Location: 1 - 5,542 nt. (total: 5,542 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5542:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_1

Search NORINE for peptide: strict or relaxed

AMP-binding (3..383): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: nIyWLAASgK
Nearest Stachelhaus code:: 2-oxo-isovaleric-acid
Stachelhaus code match:: 70% (weak)

PKS_AT (1149..1443): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 75.0%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 124.8
inactive: 87.2
Methylmalonyl-CoA: 49.8
Methoxymalonyl-CoA: 49.6
Propionyl-CoA: 22.4
Benzoyl-CoA: 21.6
Isobutyryl-CoA: 16.4
Ethylmalonyl-CoA: 16.0
2-Methylbutyryl-CoA: 13.9
CHC-CoA: 12.3
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

c00004_3300025.. - Region 1 - NRPS,T1PKS

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Location: 1 - 5,937 nt. (total: 5,937 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5937:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_1

Search NORINE for peptide: strict or relaxed

AMP-binding (272..670): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DATKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

ctg4_2

PKS_AT (542..818): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 30.6
Propionyl-CoA: 14.2
Malonyl-CoA: 13.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

c00005_3300025.. - Region 1 - NRPS,bacteriocin

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Location: 1 - 6,529 nt. (total: 6,529 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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c00006_3300025.. - Region 1 - T1PKS

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Location: 1 - 13,562 nt. (total: 13,562 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 13562:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_3

PKS_AT (572..867): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 75.0%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 152.2
inactive: 73.7
Methoxymalonyl-CoA: 72.1
Methylmalonyl-CoA: 63.7
Propionyl-CoA: 48.5
Ethylmalonyl-CoA: 35.0
Isobutyryl-CoA: 34.3
fatty_acid: 24.6
Benzoyl-CoA: 24.2
2-Methylbutyryl-CoA: 24.1
CHC-CoA: 23.1
Acetyl-CoA: 22.2
3-Methylbutyryl-CoA: 18.9
trans-1,2-CPDA: 18.6

ctg6_4

PKS_AT (568..853): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 107.9
inactive: 73.9
Methylmalonyl-CoA: 70.7
Methoxymalonyl-CoA: 67.1
Propionyl-CoA: 51.3
Ethylmalonyl-CoA: 48.6
Isobutyryl-CoA: 44.0
2-Methylbutyryl-CoA: 32.6
Acetyl-CoA: 19.4
CHC-CoA: 19.3
Benzoyl-CoA: 19.1
fatty_acid: 18.9
trans-1,2-CPDA: 11.5
3-Methylbutyryl-CoA: 9.0

c00070_3300025.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 12,166 nt. (total: 12,166 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12166:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X) + (gly - ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg70_1

Search NORINE for peptide: strict or relaxed

AMP-binding (0..311): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVGvIGeVmK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

ctg70_2

Search NORINE for peptide: strict or relaxed

AMP-binding (534..930): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

PKS_AT (1641..1928): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 107.5
inactive: 48.1
Methoxymalonyl-CoA: 43.9
Methylmalonyl-CoA: 30.2
Propionyl-CoA: 22.4
2-Methylbutyryl-CoA: 17.9
Benzoyl-CoA: 12.9
Ethylmalonyl-CoA: 10.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

c00140_3300025.. - Region 1 - NRPS,T1PKS

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Location: 1 - 12,624 nt. (total: 12,624 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12624:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg140_1

Search NORINE for peptide: strict or relaxed

AMP-binding (272..679): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DApKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg140_2

PKS_AT (533..821): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 147.6
inactive: 76.2
Methoxymalonyl-CoA: 53.5
Methylmalonyl-CoA: 36.9
Benzoyl-CoA: 20.1
Propionyl-CoA: 20.0
2-Methylbutyryl-CoA: 19.3
CHC-CoA: 18.0
fatty_acid: 17.1
Acetyl-CoA: 16.4
Isobutyryl-CoA: 15.9
trans-1,2-CPDA: 10.0
Ethylmalonyl-CoA: 6.9
3-Methylbutyryl-CoA: 0.0

c00190_3300025.. - Region 1 - betalactone

Download region GenBank file

Location: 1 - 22,461 nt. (total: 22,461 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)

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c00192_3300025.. - Region 1 - bacteriocin

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Location: 4,745 - 11,217 nt. (total: 6,473 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

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