3300025828_6 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00003_3300025.. (original name was: 3300025828.a:Ga0208547_1002224)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	T1PKS	1	10,457

c00031_3300025.. (original name was: 3300025828.a:Ga0208547_1009056)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	NRPS	1	4,560

c00055_3300025.. (original name was: 3300025828.a:Ga0208547_1000880)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	NRPS,T1PKS	1	16,965

c00064_3300025.. (original name was: 3300025828.a:Ga0208547_1000053)

Region	Type	From	To	Most similar known cluster		Similarity
Region 64.1	betalactone	29,056	49,961

c00072_3300025.. (original name was: 3300025828.a:Ga0208547_1002789)

Region	Type	From	To	Most similar known cluster		Similarity
Region 72.1	NRPS	1	9,293

c00151_3300025.. (original name was: 3300025828.a:Ga0208547_1001675)

Region	Type	From	To	Most similar known cluster		Similarity
Region 151.1	T1PKS	1	12,156

c00176_3300025.. (original name was: 3300025828.a:Ga0208547_1000802)

Region	Type	From	To	Most similar known cluster		Similarity
Region 176.1	bacteriocin	5,654	16,598

Region	Type	From	To	Similarity
Region 3.1	T1PKS	1	10,457
Region 31.1	NRPS	1	4,560
Region 55.1	NRPS,T1PKS	1	16,965
Region 64.1	betalactone	29,056	49,961
Region 72.1	NRPS	1	9,293
Region 151.1	T1PKS	1	12,156
Region 176.1	bacteriocin	5,654	16,598

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025828.a:Ga0208547_1015262); c00002_3300025.. (original name was: 3300025828.a:Ga0208547_1002910); c00004_3300025.. (original name was: 3300025828.a:Ga0208547_1001136); c00005_3300025.. (original name was: 3300025828.a:Ga0208547_1006243); c00006_3300025.. (original name was: 3300025828.a:Ga0208547_1006969); c00007_3300025.. (original name was: 3300025828.a:Ga0208547_1017145); c00008_3300025.. (original name was: 3300025828.a:Ga0208547_1015426); c00009_3300025.. (original name was: 3300025828.a:Ga0208547_1014389); c00010_3300025.. (original name was: 3300025828.a:Ga0208547_1014021); c00011_3300025.. (original name was: 3300025828.a:Ga0208547_1013793); c00012_3300025.. (original name was: 3300025828.a:Ga0208547_1013431); c00013_3300025.. (original name was: 3300025828.a:Ga0208547_1012830); c00014_3300025.. (original name was: 3300025828.a:Ga0208547_1012696); c00015_3300025.. (original name was: 3300025828.a:Ga0208547_1009350); c00016_3300025.. (original name was: 3300025828.a:Ga0208547_1008858); c00017_3300025.. (original name was: 3300025828.a:Ga0208547_1007239); c00018_3300025.. (original name was: 3300025828.a:Ga0208547_1007009); c00019_3300025.. (original name was: 3300025828.a:Ga0208547_1006588); c00020_3300025.. (original name was: 3300025828.a:Ga0208547_1002898); c00021_3300025.. (original name was: 3300025828.a:Ga0208547_1002816); c00022_3300025.. (original name was: 3300025828.a:Ga0208547_1002375); c00023_3300025.. (original name was: 3300025828.a:Ga0208547_1008998); c00024_3300025.. (original name was: 3300025828.a:Ga0208547_1001237); c00025_3300025.. (original name was: 3300025828.a:Ga0208547_1001005); c00026_3300025.. (original name was: 3300025828.a:Ga0208547_1010013); c00027_3300025.. (original name was: 3300025828.a:Ga0208547_1016302); c00028_3300025.. (original name was: 3300025828.a:Ga0208547_1009735); c00029_3300025.. (original name was: 3300025828.a:Ga0208547_1000077); c00030_3300025.. (original name was: 3300025828.a:Ga0208547_1000212); c00032_3300025.. (original name was: 3300025828.a:Ga0208547_1000300); c00033_3300025.. (original name was: 3300025828.a:Ga0208547_1000915); c00034_3300025.. (original name was: 3300025828.a:Ga0208547_1014290); c00035_3300025.. (original name was: 3300025828.a:Ga0208547_1004141); c00036_3300025.. (original name was: 3300025828.a:Ga0208547_1005948); c00037_3300025.. (original name was: 3300025828.a:Ga0208547_1002123); c00038_3300025.. (original name was: 3300025828.a:Ga0208547_1010741); c00039_3300025.. (original name was: 3300025828.a:Ga0208547_1012026); c00040_3300025.. (original name was: 3300025828.a:Ga0208547_1003646); c00041_3300025.. (original name was: 3300025828.a:Ga0208547_1006870); c00042_3300025.. (original name was: 3300025828.a:Ga0208547_1000900); c00043_3300025.. (original name was: 3300025828.a:Ga0208547_1007472); c00044_3300025.. (original name was: 3300025828.a:Ga0208547_1007074); c00045_3300025.. (original name was: 3300025828.a:Ga0208547_1010922); c00046_3300025.. (original name was: 3300025828.a:Ga0208547_1005947); c00047_3300025.. (original name was: 3300025828.a:Ga0208547_1016597); c00048_3300025.. (original name was: 3300025828.a:Ga0208547_1005400); c00049_3300025.. (original name was: 3300025828.a:Ga0208547_1006512); c00050_3300025.. (original name was: 3300025828.a:Ga0208547_1000813); c00051_3300025.. (original name was: 3300025828.a:Ga0208547_1000142); c00052_3300025.. (original name was: 3300025828.a:Ga0208547_1006091); c00053_3300025.. (original name was: 3300025828.a:Ga0208547_1001047); c00054_3300025.. (original name was: 3300025828.a:Ga0208547_1000794); c00056_3300025.. (original name was: 3300025828.a:Ga0208547_1000482); c00057_3300025.. (original name was: 3300025828.a:Ga0208547_1000294); c00058_3300025.. (original name was: 3300025828.a:Ga0208547_1000520); c00059_3300025.. (original name was: 3300025828.a:Ga0208547_1003107); c00060_3300025.. (original name was: 3300025828.a:Ga0208547_1003422); c00061_3300025.. (original name was: 3300025828.a:Ga0208547_1003452); c00062_3300025.. (original name was: 3300025828.a:Ga0208547_1000268); c00063_3300025.. (original name was: 3300025828.a:Ga0208547_1001446); c00065_3300025.. (original name was: 3300025828.a:Ga0208547_1002769); c00066_3300025.. (original name was: 3300025828.a:Ga0208547_1000936); c00067_3300025.. (original name was: 3300025828.a:Ga0208547_1011024); c00068_3300025.. (original name was: 3300025828.a:Ga0208547_1013097); c00069_3300025.. (original name was: 3300025828.a:Ga0208547_1003147); c00070_3300025.. (original name was: 3300025828.a:Ga0208547_1000560); c00071_3300025.. (original name was: 3300025828.a:Ga0208547_1001918); c00073_3300025.. (original name was: 3300025828.a:Ga0208547_1000401); c00074_3300025.. (original name was: 3300025828.a:Ga0208547_1004013); c00075_3300025.. (original name was: 3300025828.a:Ga0208547_1013939); c00076_3300025.. (original name was: 3300025828.a:Ga0208547_1005979); c00077_3300025.. (original name was: 3300025828.a:Ga0208547_1002198); c00078_3300025.. (original name was: 3300025828.a:Ga0208547_1002480); c00079_3300025.. (original name was: 3300025828.a:Ga0208547_1012884); c00080_3300025.. (original name was: 3300025828.a:Ga0208547_1000546); c00081_3300025.. (original name was: 3300025828.a:Ga0208547_1004685); c00082_3300025.. (original name was: 3300025828.a:Ga0208547_1002098); c00083_3300025.. (original name was: 3300025828.a:Ga0208547_1012404); c00084_3300025.. (original name was: 3300025828.a:Ga0208547_1003847); c00085_3300025.. (original name was: 3300025828.a:Ga0208547_1003648); c00086_3300025.. (original name was: 3300025828.a:Ga0208547_1005683); c00087_3300025.. (original name was: 3300025828.a:Ga0208547_1001902); c00088_3300025.. (original name was: 3300025828.a:Ga0208547_1000447); c00089_3300025.. (original name was: 3300025828.a:Ga0208547_1002713); c00090_3300025.. (original name was: 3300025828.a:Ga0208547_1002912); c00091_3300025.. (original name was: 3300025828.a:Ga0208547_1009069); c00092_3300025.. (original name was: 3300025828.a:Ga0208547_1003799); c00093_3300025.. (original name was: 3300025828.a:Ga0208547_1005193); c00094_3300025.. (original name was: 3300025828.a:Ga0208547_1006274); c00095_3300025.. (original name was: 3300025828.a:Ga0208547_1003238); c00096_3300025.. (original name was: 3300025828.a:Ga0208547_1009721); c00097_3300025.. (original name was: 3300025828.a:Ga0208547_1001729); c00098_3300025.. (original name was: 3300025828.a:Ga0208547_1002818); c00099_3300025.. (original name was: 3300025828.a:Ga0208547_1005803); c00100_3300025.. (original name was: 3300025828.a:Ga0208547_1013757); c00101_3300025.. (original name was: 3300025828.a:Ga0208547_1002633); c00102_3300025.. (original name was: 3300025828.a:Ga0208547_1009797); c00103_3300025.. (original name was: 3300025828.a:Ga0208547_1003837); c00104_3300025.. (original name was: 3300025828.a:Ga0208547_1002046); c00105_3300025.. (original name was: 3300025828.a:Ga0208547_1003439); c00106_3300025.. (original name was: 3300025828.a:Ga0208547_1003638); c00107_3300025.. (original name was: 3300025828.a:Ga0208547_1002527); c00108_3300025.. (original name was: 3300025828.a:Ga0208547_1000754); c00109_3300025.. (original name was: 3300025828.a:Ga0208547_1017271); c00110_3300025.. (original name was: 3300025828.a:Ga0208547_1003163); c00111_3300025.. (original name was: 3300025828.a:Ga0208547_1002964); c00112_3300025.. (original name was: 3300025828.a:Ga0208547_1005374); c00113_3300025.. (original name was: 3300025828.a:Ga0208547_1002554); c00114_3300025.. (original name was: 3300025828.a:Ga0208547_1006692); c00115_3300025.. (original name was: 3300025828.a:Ga0208547_1003551); c00116_3300025.. (original name was: 3300025828.a:Ga0208547_1002556); c00117_3300025.. (original name was: 3300025828.a:Ga0208547_1000713); c00118_3300025.. (original name was: 3300025828.a:Ga0208547_1002145); c00119_3300025.. (original name was: 3300025828.a:Ga0208547_1010284); c00120_3300025.. (original name was: 3300025828.a:Ga0208547_1002921); c00121_3300025.. (original name was: 3300025828.a:Ga0208547_1000221); c00122_3300025.. (original name was: 3300025828.a:Ga0208547_1001017); c00123_3300025.. (original name was: 3300025828.a:Ga0208547_1000239); c00124_3300025.. (original name was: 3300025828.a:Ga0208547_1005413); c00125_3300025.. (original name was: 3300025828.a:Ga0208547_1002030); c00126_3300025.. (original name was: 3300025828.a:Ga0208547_1000586); c00127_3300025.. (original name was: 3300025828.a:Ga0208547_1014166); c00128_3300025.. (original name was: 3300025828.a:Ga0208547_1001046); c00129_3300025.. (original name was: 3300025828.a:Ga0208547_1002638); c00130_3300025.. (original name was: 3300025828.a:Ga0208547_1004167); c00131_3300025.. (original name was: 3300025828.a:Ga0208547_1000078); c00132_3300025.. (original name was: 3300025828.a:Ga0208547_1000675); c00133_3300025.. (original name was: 3300025828.a:Ga0208547_1001922); c00134_3300025.. (original name was: 3300025828.a:Ga0208547_1000070); c00135_3300025.. (original name was: 3300025828.a:Ga0208547_1000015); c00136_3300025.. (original name was: 3300025828.a:Ga0208547_1002204); c00137_3300025.. (original name was: 3300025828.a:Ga0208547_1005925); c00138_3300025.. (original name was: 3300025828.a:Ga0208547_1002343); c00139_3300025.. (original name was: 3300025828.a:Ga0208547_1007555); c00140_3300025.. (original name was: 3300025828.a:Ga0208547_1001082); c00141_3300025.. (original name was: 3300025828.a:Ga0208547_1002674); c00142_3300025.. (original name was: 3300025828.a:Ga0208547_1000883); c00143_3300025.. (original name was: 3300025828.a:Ga0208547_1003242); c00144_3300025.. (original name was: 3300025828.a:Ga0208547_1003839); c00145_3300025.. (original name was: 3300025828.a:Ga0208547_1009593); c00146_3300025.. (original name was: 3300025828.a:Ga0208547_1001633); c00147_3300025.. (original name was: 3300025828.a:Ga0208547_1000558); c00148_3300025.. (original name was: 3300025828.a:Ga0208547_1000110); c00149_3300025.. (original name was: 3300025828.a:Ga0208547_1000309); c00150_3300025.. (original name was: 3300025828.a:Ga0208547_1002498); c00152_3300025.. (original name was: 3300025828.a:Ga0208547_1010829); c00153_3300025.. (original name was: 3300025828.a:Ga0208547_1000282); c00154_3300025.. (original name was: 3300025828.a:Ga0208547_1010818); c00155_3300025.. (original name was: 3300025828.a:Ga0208547_1000669); c00156_3300025.. (original name was: 3300025828.a:Ga0208547_1009590); c00157_3300025.. (original name was: 3300025828.a:Ga0208547_1013684); c00158_3300025.. (original name was: 3300025828.a:Ga0208547_1008155); c00159_3300025.. (original name was: 3300025828.a:Ga0208547_1005176); c00160_3300025.. (original name was: 3300025828.a:Ga0208547_1005375); c00161_3300025.. (original name was: 3300025828.a:Ga0208547_1000374); c00162_3300025.. (original name was: 3300025828.a:Ga0208547_1003672); c00163_3300025.. (original name was: 3300025828.a:Ga0208547_1005323); c00164_3300025.. (original name was: 3300025828.a:Ga0208547_1009104); c00165_3300025.. (original name was: 3300025828.a:Ga0208547_1011494); c00166_3300025.. (original name was: 3300025828.a:Ga0208547_1009902); c00167_3300025.. (original name was: 3300025828.a:Ga0208547_1005126); c00168_3300025.. (original name was: 3300025828.a:Ga0208547_1017294); c00169_3300025.. (original name was: 3300025828.a:Ga0208547_1002560); c00170_3300025.. (original name was: 3300025828.a:Ga0208547_1007410); c00171_3300025.. (original name was: 3300025828.a:Ga0208547_1007586); c00172_3300025.. (original name was: 3300025828.a:Ga0208547_1012072); c00173_3300025.. (original name was: 3300025828.a:Ga0208547_1000928); c00174_3300025.. (original name was: 3300025828.a:Ga0208547_1007097); c00175_3300025.. (original name was: 3300025828.a:Ga0208547_1004908); c00177_3300025.. (original name was: 3300025828.a:Ga0208547_1014334); c00178_3300025.. (original name was: 3300025828.a:Ga0208547_1001200); c00179_3300025.. (original name was: 3300025828.a:Ga0208547_1001598); c00180_3300025.. (original name was: 3300025828.a:Ga0208547_1000625); c00181_3300025.. (original name was: 3300025828.a:Ga0208547_1011328)

Compact view

c00003_3300025.. - Region 1 - T1PKS

Download region GenBank file

Location: 1 - 10,457 nt. (total: 10,457 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10457:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_2

PKS_AT (572..867): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 75.0%; 2-Rhyd-Malonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 152.2
inactive: 73.7
Methoxymalonyl-CoA: 72.1
Methylmalonyl-CoA: 63.7
Propionyl-CoA: 48.5
Ethylmalonyl-CoA: 35.0
Isobutyryl-CoA: 34.3
fatty_acid: 24.6
Benzoyl-CoA: 24.2
2-Methylbutyryl-CoA: 24.1
CHC-CoA: 23.1
Acetyl-CoA: 22.2
3-Methylbutyryl-CoA: 18.9
trans-1,2-CPDA: 18.6

c00031_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 4,560 nt. (total: 4,560 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 4560:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg31_2

Search NORINE for peptide: strict or relaxed

AMP-binding (370..768): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DATKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

c00055_3300025.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 16,965 nt. (total: 16,965 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 16965:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg55_7

PKS_AT (533..821): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 147.6
inactive: 76.2
Methoxymalonyl-CoA: 53.5
Methylmalonyl-CoA: 36.9
Benzoyl-CoA: 20.1
Propionyl-CoA: 20.0
2-Methylbutyryl-CoA: 19.3
CHC-CoA: 18.0
fatty_acid: 17.1
Acetyl-CoA: 16.4
Isobutyryl-CoA: 15.9
trans-1,2-CPDA: 10.0
Ethylmalonyl-CoA: 6.9
3-Methylbutyryl-CoA: 0.0

ctg55_8

Search NORINE for peptide: strict or relaxed

PKS_AT (4..154): mal

ATSignature: (unknown)

No matches above 50%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 41.0
Propionyl-CoA: 21.4
inactive: 20.3
Methoxymalonyl-CoA: 17.3
Methylmalonyl-CoA: 13.8
Isobutyryl-CoA: 12.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

AMP-binding (1714..2121): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DApKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

c00064_3300025.. - Region 1 - betalactone

Download region GenBank file

Location: 29,056 - 49,961 nt. (total: 20,906 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00072_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 9,293 nt. (total: 9,293 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9293:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg72_1

Search NORINE for peptide: strict or relaxed

AMP-binding (534..940): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg72_2

PKS_AT (48..282): pk

ATSignature: (unknown)

No matches above 50%

minowa: inactive

Prediction, score:

inactive: 30.3
Propionyl-CoA: 13.0
Malonyl-CoA: 11.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

c00151_3300025.. - Region 1 - T1PKS

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Location: 1 - 12,156 nt. (total: 12,156 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12156:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg151_1

PKS_AT (420..702): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 99.0
Methoxymalonyl-CoA: 51.6
inactive: 45.6
Methylmalonyl-CoA: 41.6
Propionyl-CoA: 24.6
Ethylmalonyl-CoA: 23.9
2-Methylbutyryl-CoA: 20.6
CHC-CoA: 15.7
Benzoyl-CoA: 12.4
trans-1,2-CPDA: 10.5
Isobutyryl-CoA: 10.3
fatty_acid: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg151_2

PKS_AT (569..857): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 138.5
Methoxymalonyl-CoA: 80.9
Methylmalonyl-CoA: 71.3
inactive: 69.6
Propionyl-CoA: 51.0
Ethylmalonyl-CoA: 34.5
fatty_acid: 22.2
Isobutyryl-CoA: 19.9
Acetyl-CoA: 18.0
CHC-CoA: 15.5
2-Methylbutyryl-CoA: 14.4
trans-1,2-CPDA: 14.3
Benzoyl-CoA: 10.8
3-Methylbutyryl-CoA: 9.7

c00176_3300025.. - Region 1 - bacteriocin

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Location: 5,654 - 16,598 nt. (total: 10,945 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it