3300025912_15 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_3300025.. (original name was: 3300025912.a:Ga0207707_10000050)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS-like	47,053	89,671

c00005_3300025.. (original name was: 3300025912.a:Ga0207707_10000025)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	TfuA-related	1	20,633

c00009_3300025.. (original name was: 3300025912.a:Ga0207707_10000012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS	1	66,770

c00015_3300025.. (original name was: 3300025912.a:Ga0207707_10000013)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	lassopeptide	246,414	264,517

c00019_3300025.. (original name was: 3300025912.a:Ga0207707_10000081)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	oligosaccharide,ladderane	1	46,588

c00021_3300025.. (original name was: 3300025912.a:Ga0207707_10000858)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	T3PKS	1	26,409

c00047_3300025.. (original name was: 3300025912.a:Ga0207707_10000320)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS-like	24,865	50,788

c00055_3300025.. (original name was: 3300025912.a:Ga0207707_10000003)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	NRPS-like	378,336	421,551

Region	Type	From	To	Similarity
Region 4.1	NRPS-like	47,053	89,671
Region 5.1	TfuA-related	1	20,633
Region 9.1	NRPS	1	66,770
Region 15.1	lassopeptide	246,414	264,517
Region 19.1	oligosaccharide,ladderane	1	46,588
Region 21.1	T3PKS	1	26,409
Region 47.1	NRPS-like	24,865	50,788
Region 55.1	NRPS-like	378,336	421,551

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025912.a:Ga0207707_10059433); c00002_3300025.. (original name was: 3300025912.a:Ga0207707_10028092); c00003_3300025.. (original name was: 3300025912.a:Ga0207707_10000503); c00006_3300025.. (original name was: 3300025912.a:Ga0207707_10000072); c00007_3300025.. (original name was: 3300025912.a:Ga0207707_10000014); c00008_3300025.. (original name was: 3300025912.a:Ga0207707_10000028); c00010_3300025.. (original name was: 3300025912.a:Ga0207707_10000118); c00011_3300025.. (original name was: 3300025912.a:Ga0207707_10000577); c00012_3300025.. (original name was: 3300025912.a:Ga0207707_10051179); c00013_3300025.. (original name was: 3300025912.a:Ga0207707_10000060); c00014_3300025.. (original name was: 3300025912.a:Ga0207707_10053848); c00016_3300025.. (original name was: 3300025912.a:Ga0207707_10002368); c00017_3300025.. (original name was: 3300025912.a:Ga0207707_10000022); c00018_3300025.. (original name was: 3300025912.a:Ga0207707_10001768); c00020_3300025.. (original name was: 3300025912.a:Ga0207707_10042180); c00022_3300025.. (original name was: 3300025912.a:Ga0207707_10001988); c00023_3300025.. (original name was: 3300025912.a:Ga0207707_10000031); c00024_3300025.. (original name was: 3300025912.a:Ga0207707_10000008); c00025_3300025.. (original name was: 3300025912.a:Ga0207707_10012701); c00026_3300025.. (original name was: 3300025912.a:Ga0207707_10000188); c00027_3300025.. (original name was: 3300025912.a:Ga0207707_10031261); c00028_3300025.. (original name was: 3300025912.a:Ga0207707_10020229); c00029_3300025.. (original name was: 3300025912.a:Ga0207707_10000053); c00030_3300025.. (original name was: 3300025912.a:Ga0207707_10004759); c00031_3300025.. (original name was: 3300025912.a:Ga0207707_10000006); c00032_3300025.. (original name was: 3300025912.a:Ga0207707_10000007); c00033_3300025.. (original name was: 3300025912.a:Ga0207707_10000024); c00034_3300025.. (original name was: 3300025912.a:Ga0207707_10000218); c00035_3300025.. (original name was: 3300025912.a:Ga0207707_10000077); c00036_3300025.. (original name was: 3300025912.a:Ga0207707_10000030); c00037_3300025.. (original name was: 3300025912.a:Ga0207707_10021608); c00038_3300025.. (original name was: 3300025912.a:Ga0207707_10000571); c00039_3300025.. (original name was: 3300025912.a:Ga0207707_10019195); c00040_3300025.. (original name was: 3300025912.a:Ga0207707_10000190); c00041_3300025.. (original name was: 3300025912.a:Ga0207707_10057102); c00042_3300025.. (original name was: 3300025912.a:Ga0207707_10001036); c00043_3300025.. (original name was: 3300025912.a:Ga0207707_10006389); c00044_3300025.. (original name was: 3300025912.a:Ga0207707_10000335); c00045_3300025.. (original name was: 3300025912.a:Ga0207707_10000044); c00046_3300025.. (original name was: 3300025912.a:Ga0207707_10070354); c00048_3300025.. (original name was: 3300025912.a:Ga0207707_10000080); c00049_3300025.. (original name was: 3300025912.a:Ga0207707_10000033); c00050_3300025.. (original name was: 3300025912.a:Ga0207707_10050088); c00051_3300025.. (original name was: 3300025912.a:Ga0207707_10003916); c00052_3300025.. (original name was: 3300025912.a:Ga0207707_10000015); c00053_3300025.. (original name was: 3300025912.a:Ga0207707_10000062); c00054_3300025.. (original name was: 3300025912.a:Ga0207707_10000097); c00056_3300025.. (original name was: 3300025912.a:Ga0207707_10000037); c00057_3300025.. (original name was: 3300025912.a:Ga0207707_10001201); c00058_3300025.. (original name was: 3300025912.a:Ga0207707_10000017); c00059_3300025.. (original name was: 3300025912.a:Ga0207707_10000016); c00060_3300025.. (original name was: 3300025912.a:Ga0207707_10000063); c00061_3300025.. (original name was: 3300025912.a:Ga0207707_10000004); c00062_3300025.. (original name was: 3300025912.a:Ga0207707_10000330); c00063_3300025.. (original name was: 3300025912.a:Ga0207707_10000142)

Compact view

c00004_3300025.. - Region 1 - NRPS-like

Download region GenBank file

Location: 47,053 - 89,671 nt. (total: 42,619 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 47052 - 89671:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_44

Search NORINE for peptide: strict or relaxed

AMP-binding (56..452): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vfmvIGGslK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 40% (weak)

c00009_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 66,770 nt. (total: 66,770 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 66770:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala) + (ala) + (X) + (X) + (ala-b) + (D-asp) + (ala) + (pro) + (ala-b) + (val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg9_6

Search NORINE for peptide: strict or relaxed

AMP-binding (497..896): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

ctg9_7

Search NORINE for peptide: strict or relaxed

AMP-binding (496..899): ala-b

NRPSPredictor2: ala-b

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: gDWVvSLADK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 80% (moderate)

ctg9_8

Search NORINE for peptide: strict or relaxed

AMP-binding (479..882): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

ctg9_9

Search NORINE for peptide: strict or relaxed

AMP-binding (514..905): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg9_10

Search NORINE for peptide: strict or relaxed

AMP-binding (460..863): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg9_12

Search NORINE for peptide: strict or relaxed

AMP-binding (508..910): ala-b

NRPSPredictor2: ala-b

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VDcVvSLADK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 80% (moderate)

ctg9_13

Search NORINE for peptide: strict or relaxed

AMP-binding (465..869): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg9_15

Search NORINE for peptide: strict or relaxed

AMP-binding (16..415): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: stGtrSSmiK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 40% (weak)

ctg9_16

Search NORINE for peptide: strict or relaxed

AMP-binding (471..861): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg9_17

Search NORINE for peptide: strict or relaxed

AMP-binding (27..417): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

c00015_3300025.. - Region 1 - lassopeptide

Download region GenBank file

Location: 246,414 - 264,517 nt. (total: 18,104 nt) Show pHMM detection rules used

Region on contig edge.

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lasso peptides

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

c00047_3300025.. - Region 1 - NRPS-like

Download region GenBank file

Location: 24,865 - 50,788 nt. (total: 25,924 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 24864 - 50788:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg47_41

Search NORINE for peptide: strict or relaxed

AMP-binding (585..1021): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: eFtviGGpVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

c00055_3300025.. - Region 1 - NRPS-like

Download region GenBank file

Location: 378,336 - 421,551 nt. (total: 43,216 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 378335 - 421551:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg55_283

Search NORINE for peptide: strict or relaxed

AMP-binding (58..498): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ayvVVAGgaK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)