3300025935_7 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00006_3300025.. (original name was: 3300025935.a:Ga0207709_10000029)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	indole	136,663	158,051

c00015_3300025.. (original name was: 3300025935.a:Ga0207709_10000017)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	T3PKS	405,344	446,480

c00018_3300025.. (original name was: 3300025935.a:Ga0207709_10000048)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	NRPS	15,020	62,606

c00026_3300025.. (original name was: 3300025935.a:Ga0207709_10000012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	phosphonate	353,262	394,146

c00033_3300025.. (original name was: 3300025935.a:Ga0207709_10000060)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	NRPS,T1PKS	102,723	195,306

c00053_3300025.. (original name was: 3300025935.a:Ga0207709_10000042)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	NRPS-like	205,363	249,796

c00065_3300025.. (original name was: 3300025935.a:Ga0207709_10000025)

Region	Type	From	To	Most similar known cluster		Similarity
Region 65.1	NRPS-like	199,479	244,593

c00066_3300025.. (original name was: 3300025935.a:Ga0207709_10000219)

Region	Type	From	To	Most similar known cluster		Similarity
Region 66.1	NRPS	38,717	72,376

c00070_3300025.. (original name was: 3300025935.a:Ga0207709_10000041)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	NRPS,T1PKS	1	90,014

Region	Type	From	To	Similarity
Region 6.1	indole	136,663	158,051
Region 15.1	T3PKS	405,344	446,480
Region 18.1	NRPS	15,020	62,606
Region 26.1	phosphonate	353,262	394,146
Region 33.1	NRPS,T1PKS	102,723	195,306
Region 53.1	NRPS-like	205,363	249,796
Region 65.1	NRPS-like	199,479	244,593
Region 66.1	NRPS	38,717	72,376
Region 70.1	NRPS,T1PKS	1	90,014

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025935.a:Ga0207709_10013218); c00002_3300025.. (original name was: 3300025935.a:Ga0207709_10031142); c00003_3300025.. (original name was: 3300025935.a:Ga0207709_10016169); c00004_3300025.. (original name was: 3300025935.a:Ga0207709_10010452); c00005_3300025.. (original name was: 3300025935.a:Ga0207709_10007733); c00007_3300025.. (original name was: 3300025935.a:Ga0207709_10000162); c00008_3300025.. (original name was: 3300025935.a:Ga0207709_10000584); c00009_3300025.. (original name was: 3300025935.a:Ga0207709_10000069); c00010_3300025.. (original name was: 3300025935.a:Ga0207709_10000309); c00011_3300025.. (original name was: 3300025935.a:Ga0207709_10000028); c00012_3300025.. (original name was: 3300025935.a:Ga0207709_10000082); c00013_3300025.. (original name was: 3300025935.a:Ga0207709_10000128); c00014_3300025.. (original name was: 3300025935.a:Ga0207709_10000738); c00016_3300025.. (original name was: 3300025935.a:Ga0207709_10003084); c00017_3300025.. (original name was: 3300025935.a:Ga0207709_10000499); c00019_3300025.. (original name was: 3300025935.a:Ga0207709_10000142); c00020_3300025.. (original name was: 3300025935.a:Ga0207709_10000091); c00021_3300025.. (original name was: 3300025935.a:Ga0207709_10000194); c00022_3300025.. (original name was: 3300025935.a:Ga0207709_10000150); c00023_3300025.. (original name was: 3300025935.a:Ga0207709_10000056); c00024_3300025.. (original name was: 3300025935.a:Ga0207709_10000153); c00025_3300025.. (original name was: 3300025935.a:Ga0207709_10000206); c00027_3300025.. (original name was: 3300025935.a:Ga0207709_10018251); c00028_3300025.. (original name was: 3300025935.a:Ga0207709_10000791); c00029_3300025.. (original name was: 3300025935.a:Ga0207709_10000650); c00030_3300025.. (original name was: 3300025935.a:Ga0207709_10001588); c00031_3300025.. (original name was: 3300025935.a:Ga0207709_10000133); c00032_3300025.. (original name was: 3300025935.a:Ga0207709_10026638); c00034_3300025.. (original name was: 3300025935.a:Ga0207709_10000108); c00035_3300025.. (original name was: 3300025935.a:Ga0207709_10000009); c00036_3300025.. (original name was: 3300025935.a:Ga0207709_10000300); c00037_3300025.. (original name was: 3300025935.a:Ga0207709_10010031); c00038_3300025.. (original name was: 3300025935.a:Ga0207709_10001010); c00039_3300025.. (original name was: 3300025935.a:Ga0207709_10000113); c00040_3300025.. (original name was: 3300025935.a:Ga0207709_10000501); c00041_3300025.. (original name was: 3300025935.a:Ga0207709_10000088); c00042_3300025.. (original name was: 3300025935.a:Ga0207709_10000135); c00043_3300025.. (original name was: 3300025935.a:Ga0207709_10018570); c00044_3300025.. (original name was: 3300025935.a:Ga0207709_10000043); c00045_3300025.. (original name was: 3300025935.a:Ga0207709_10000140); c00046_3300025.. (original name was: 3300025935.a:Ga0207709_10000231); c00047_3300025.. (original name was: 3300025935.a:Ga0207709_10000037); c00048_3300025.. (original name was: 3300025935.a:Ga0207709_10004851); c00049_3300025.. (original name was: 3300025935.a:Ga0207709_10001359); c00050_3300025.. (original name was: 3300025935.a:Ga0207709_10001165); c00051_3300025.. (original name was: 3300025935.a:Ga0207709_10000258); c00052_3300025.. (original name was: 3300025935.a:Ga0207709_10000064); c00054_3300025.. (original name was: 3300025935.a:Ga0207709_10000369); c00055_3300025.. (original name was: 3300025935.a:Ga0207709_10000175); c00056_3300025.. (original name was: 3300025935.a:Ga0207709_10010942); c00057_3300025.. (original name was: 3300025935.a:Ga0207709_10000024); c00058_3300025.. (original name was: 3300025935.a:Ga0207709_10000101); c00059_3300025.. (original name was: 3300025935.a:Ga0207709_10000062); c00060_3300025.. (original name was: 3300025935.a:Ga0207709_10007133); c00061_3300025.. (original name was: 3300025935.a:Ga0207709_10000052); c00062_3300025.. (original name was: 3300025935.a:Ga0207709_10000287); c00063_3300025.. (original name was: 3300025935.a:Ga0207709_10000027); c00064_3300025.. (original name was: 3300025935.a:Ga0207709_10000124); c00067_3300025.. (original name was: 3300025935.a:Ga0207709_10001771); c00068_3300025.. (original name was: 3300025935.a:Ga0207709_10000192); c00069_3300025.. (original name was: 3300025935.a:Ga0207709_10000427); c00071_3300025.. (original name was: 3300025935.a:Ga0207709_10000235); c00072_3300025.. (original name was: 3300025935.a:Ga0207709_10028268); c00073_3300025.. (original name was: 3300025935.a:Ga0207709_10001884)

Compact view

c00006_3300025.. - Region 1 - indole

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Location: 136,663 - 158,051 nt. (total: 21,389 nt) Show pHMM detection rules used

indole: (indsynth or dmat or indole_PTase)

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c00015_3300025.. - Region 1 - T3PKS

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Location: 405,344 - 446,480 nt. (total: 41,137 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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core biosynthetic genes

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c00018_3300025.. - Region 1 - NRPS

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Location: 15,020 - 62,606 nt. (total: 47,587 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 15019 - 62606:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_40

Search NORINE for peptide: strict or relaxed

AMP-binding (535..950): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: dPRNfVlraK
Nearest Stachelhaus code:: aad
Stachelhaus code match:: 50% (weak)

ctg18_42

Search NORINE for peptide: strict or relaxed

AMP-binding (33..424): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00026_3300025.. - Region 1 - phosphonate

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Location: 353,262 - 394,146 nt. (total: 40,885 nt) Show pHMM detection rules used

phosphonate: phosphonates

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c00033_3300025.. - Region 1 - NRPS,T1PKS

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Location: 102,723 - 195,306 nt. (total: 92,584 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 102722 - 195306:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X - X) + (X - pro - leu) + (ohmal) + (X - X - ohmal) + (leu) + (ile - val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg33_83

Search NORINE for peptide: strict or relaxed

CAL_domain (49..493): pk

minowa: NH2

Prediction, score:

NH2: 186.3
fatty_acid: 13.9
Acetyl-CoA: 4.8
AHBA: 1.3
shikimic_acid: 0.0

AMP-binding (1179..1588): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVenIGvIgK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

AMP-binding (2711..3107): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmfIGVVlK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 70% (weak)

ctg33_84

Search NORINE for peptide: strict or relaxed

AMP-binding (511..911): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPwHvGfiGK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)

AMP-binding (1575..1979): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHLAK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (2642..3038): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAfFhGNViK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

ctg33_86

PKS_AT (536..823): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 66.7%; 2-Methylbutyryl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 155.4
inactive: 87.6
Methoxymalonyl-CoA: 71.1
Methylmalonyl-CoA: 62.6
Propionyl-CoA: 56.7
Ethylmalonyl-CoA: 36.5
Isobutyryl-CoA: 32.2
2-Methylbutyryl-CoA: 29.4
fatty_acid: 25.3
Acetyl-CoA: 22.8
Benzoyl-CoA: 15.7
CHC-CoA: 14.8
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg33_88

Search NORINE for peptide: strict or relaxed

AMP-binding (481..881): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgLwhGVIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

AMP-binding (1565..1978): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVenIGaItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

PKS_AT (2703..2991): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 181.7
inactive: 117.9
Methoxymalonyl-CoA: 83.8
Methylmalonyl-CoA: 64.4
Propionyl-CoA: 55.0
Ethylmalonyl-CoA: 44.6
2-Methylbutyryl-CoA: 36.0
Isobutyryl-CoA: 30.8
Benzoyl-CoA: 23.4
CHC-CoA: 22.8
trans-1,2-CPDA: 15.4
Acetyl-CoA: 13.5
3-Methylbutyryl-CoA: 7.5
fatty_acid: 0.0

ctg33_89

Search NORINE for peptide: strict or relaxed

AMP-binding (492..892): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DGFFhGeiwK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 60% (weak)

ctg33_93

Search NORINE for peptide: strict or relaxed

AMP-binding (509..909): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

AMP-binding (1578..1977): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAfWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

c00053_3300025.. - Region 1 - NRPS-like

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Location: 205,363 - 249,796 nt. (total: 44,434 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 205362 - 249796:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg53_184

Search NORINE for peptide: strict or relaxed

AMP-binding (564..1002): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: eFtviGGpVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

c00065_3300025.. - Region 1 - NRPS-like

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Location: 199,479 - 244,593 nt. (total: 45,115 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 199478 - 244593:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg65_175

Search NORINE for peptide: strict or relaxed

AMP-binding (67..461): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgSfVAttdK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 50% (weak)

c00066_3300025.. - Region 1 - NRPS

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Location: 38,717 - 72,376 nt. (total: 33,660 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 38716 - 72376:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - D-thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg66_65

Search NORINE for peptide: strict or relaxed

AMP-binding (469..897): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRHfvyraK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

AMP-binding (1575..1983): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00070_3300025.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 90,014 nt. (total: 90,014 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 90014:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn) + (ohmal - gln) + (gln - gln - D-glu) + (asp) + (thr) + (gly - X) + (leu - gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg70_3

Search NORINE for peptide: strict or relaxed

AMP-binding (458..860): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

ctg70_4

Search NORINE for peptide: strict or relaxed

PKS_AT (537..833): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 194.2
inactive: 123.3
Methoxymalonyl-CoA: 79.0
Methylmalonyl-CoA: 72.2
Propionyl-CoA: 50.5
Isobutyryl-CoA: 48.9
Ethylmalonyl-CoA: 48.7
2-Methylbutyryl-CoA: 38.1
Benzoyl-CoA: 28.1
CHC-CoA: 27.1
Acetyl-CoA: 22.8
trans-1,2-CPDA: 15.8
fatty_acid: 14.3
3-Methylbutyryl-CoA: 7.4

AMP-binding (2001..2400): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: gln

Stachelhaus prediction details:

Stachelhaus sequence:: DAWQFGLIDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 100% (strong)

ctg70_5

Search NORINE for peptide: strict or relaxed

AMP-binding (956..1356): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: gln

Stachelhaus prediction details:

Stachelhaus sequence:: DAWQlGqvDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 70% (weak)

AMP-binding (2027..2431): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: gln

Stachelhaus prediction details:

Stachelhaus sequence:: DAWQFGLIDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 100% (strong)

AMP-binding (3103..3508): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DgeDVGaVtK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 60% (weak)

ctg70_6

Search NORINE for peptide: strict or relaxed

AMP-binding (465..867): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg70_7

Search NORINE for peptide: strict or relaxed

AMP-binding (952..1351): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg70_8

Search NORINE for peptide: strict or relaxed

AMP-binding (469..864): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1527..1942): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVrHFaLlaK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

AMP-binding (2895..3284): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DsWHFncgvK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

ctg70_11

Search NORINE for peptide: strict or relaxed

CAL_domain (53..500): pk

minowa: NH2

Prediction, score:

NH2: 195.7
fatty_acid: 24.7
AHBA: 11.7
shikimic_acid: -0.1
Acetyl-CoA: -0.8

AMP-binding (1180..1578): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

AMP-binding (2241..2636): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)