3300025949_31 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00011_3300025.. (original name was: 3300025949.a:Ga0207667_10000729)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	betalactone	1	23,117

c00020_3300025.. (original name was: 3300025949.a:Ga0207667_10000032)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	terpene	31,852	54,726

c00025_3300025.. (original name was: 3300025949.a:Ga0207667_10000120)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	arylpolyene	86,078	123,800

c00035_3300025.. (original name was: 3300025949.a:Ga0207667_10000036)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	NRPS	233,218	297,966

c00044_3300025.. (original name was: 3300025949.a:Ga0207667_10000112)

Region	Type	From	To	Most similar known cluster		Similarity
Region 44.1	bacteriocin	58,843	69,694

Region	Type	From	To	Similarity
Region 11.1	betalactone	1	23,117
Region 20.1	terpene	31,852	54,726
Region 25.1	arylpolyene	86,078	123,800
Region 35.1	NRPS	233,218	297,966
Region 44.1	bacteriocin	58,843	69,694

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025949.a:Ga0207667_10069872); c00002_3300025.. (original name was: 3300025949.a:Ga0207667_10002811); c00003_3300025.. (original name was: 3300025949.a:Ga0207667_10000283); c00004_3300025.. (original name was: 3300025949.a:Ga0207667_10004798); c00005_3300025.. (original name was: 3300025949.a:Ga0207667_10028489); c00006_3300025.. (original name was: 3300025949.a:Ga0207667_10000044); c00007_3300025.. (original name was: 3300025949.a:Ga0207667_10000034); c00008_3300025.. (original name was: 3300025949.a:Ga0207667_10000028); c00009_3300025.. (original name was: 3300025949.a:Ga0207667_10000043); c00010_3300025.. (original name was: 3300025949.a:Ga0207667_10000110); c00012_3300025.. (original name was: 3300025949.a:Ga0207667_10000025); c00013_3300025.. (original name was: 3300025949.a:Ga0207667_10000191); c00014_3300025.. (original name was: 3300025949.a:Ga0207667_10000946); c00015_3300025.. (original name was: 3300025949.a:Ga0207667_10000053); c00016_3300025.. (original name was: 3300025949.a:Ga0207667_10000912); c00017_3300025.. (original name was: 3300025949.a:Ga0207667_10000066); c00018_3300025.. (original name was: 3300025949.a:Ga0207667_10000301); c00019_3300025.. (original name was: 3300025949.a:Ga0207667_10000019); c00021_3300025.. (original name was: 3300025949.a:Ga0207667_10000115); c00022_3300025.. (original name was: 3300025949.a:Ga0207667_10010414); c00023_3300025.. (original name was: 3300025949.a:Ga0207667_10000215); c00024_3300025.. (original name was: 3300025949.a:Ga0207667_10018874); c00026_3300025.. (original name was: 3300025949.a:Ga0207667_10000208); c00027_3300025.. (original name was: 3300025949.a:Ga0207667_10002267); c00028_3300025.. (original name was: 3300025949.a:Ga0207667_10002387); c00029_3300025.. (original name was: 3300025949.a:Ga0207667_10021610); c00030_3300025.. (original name was: 3300025949.a:Ga0207667_10000438); c00031_3300025.. (original name was: 3300025949.a:Ga0207667_10002083); c00032_3300025.. (original name was: 3300025949.a:Ga0207667_10000334); c00033_3300025.. (original name was: 3300025949.a:Ga0207667_10000146); c00034_3300025.. (original name was: 3300025949.a:Ga0207667_10002292); c00036_3300025.. (original name was: 3300025949.a:Ga0207667_10004125); c00037_3300025.. (original name was: 3300025949.a:Ga0207667_10000055); c00038_3300025.. (original name was: 3300025949.a:Ga0207667_10000102); c00039_3300025.. (original name was: 3300025949.a:Ga0207667_10000235); c00040_3300025.. (original name was: 3300025949.a:Ga0207667_10002115); c00041_3300025.. (original name was: 3300025949.a:Ga0207667_10001069); c00042_3300025.. (original name was: 3300025949.a:Ga0207667_10001586); c00043_3300025.. (original name was: 3300025949.a:Ga0207667_10002274)

Compact view

c00011_3300025.. - Region 1 - betalactone

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Location: 1 - 23,117 nt. (total: 23,117 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00020_3300025.. - Region 1 - terpene

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Location: 31,852 - 54,726 nt. (total: 22,875 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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c00025_3300025.. - Region 1 - arylpolyene

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Location: 86,078 - 123,800 nt. (total: 37,723 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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c00035_3300025.. - Region 1 - NRPS

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Location: 233,218 - 297,966 nt. (total: 64,749 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 233217 - 297966:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-asp - ser) + (asp) + (D-thr - ser - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg35_217

Search NORINE for peptide: strict or relaxed

CAL_domain (54..489): pk

minowa: NH2

Prediction, score:

NH2: 170.8
fatty_acid: 9.7
Acetyl-CoA: 2.7
shikimic_acid: 0.0
AHBA: 0.0

AMP-binding (1149..1548): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (2634..3034): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg35_218

Search NORINE for peptide: strict or relaxed

AMP-binding (444..845): asp

NRPSPredictor2: asp

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg35_219

Search NORINE for peptide: strict or relaxed

AMP-binding (494..902): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (2028..2427): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (3093..3501): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGevVGGvtK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

ctg35_228

Search NORINE for peptide: strict or relaxed

AMP-binding (6..420): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gTyfiGTqiK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 40% (weak)

c00044_3300025.. - Region 1 - bacteriocin

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Location: 58,843 - 69,694 nt. (total: 10,852 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it