3300026519_18 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00027_3300026.. (original name was: 3300026519.a:Ga0256839_1000357)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	T1PKS,NRPS	1	34,580

Region	Type	From	To	Most similar known cluster	Similarity
Region 27.1	T1PKS,NRPS	1	34,580

No secondary metabolite regions were found in these records:: c00001_3300026.. (original name was: 3300026519.a:Ga0256839_1001969); c00002_3300026.. (original name was: 3300026519.a:Ga0256839_1000517); c00003_3300026.. (original name was: 3300026519.a:Ga0256839_1020513); c00004_3300026.. (original name was: 3300026519.a:Ga0256839_1000416); c00005_3300026.. (original name was: 3300026519.a:Ga0256839_1000142); c00006_3300026.. (original name was: 3300026519.a:Ga0256839_1000446); c00007_3300026.. (original name was: 3300026519.a:Ga0256839_1001950); c00008_3300026.. (original name was: 3300026519.a:Ga0256839_1000072); c00009_3300026.. (original name was: 3300026519.a:Ga0256839_1000003); c00010_3300026.. (original name was: 3300026519.a:Ga0256839_1003791); c00011_3300026.. (original name was: 3300026519.a:Ga0256839_1000036); c00012_3300026.. (original name was: 3300026519.a:Ga0256839_1000336); c00013_3300026.. (original name was: 3300026519.a:Ga0256839_1005020); c00014_3300026.. (original name was: 3300026519.a:Ga0256839_1000735); c00015_3300026.. (original name was: 3300026519.a:Ga0256839_1000590); c00016_3300026.. (original name was: 3300026519.a:Ga0256839_1000107); c00017_3300026.. (original name was: 3300026519.a:Ga0256839_1000015); c00018_3300026.. (original name was: 3300026519.a:Ga0256839_1001587); c00019_3300026.. (original name was: 3300026519.a:Ga0256839_1000078); c00020_3300026.. (original name was: 3300026519.a:Ga0256839_1000024); c00021_3300026.. (original name was: 3300026519.a:Ga0256839_1000540); c00022_3300026.. (original name was: 3300026519.a:Ga0256839_1001623); c00023_3300026.. (original name was: 3300026519.a:Ga0256839_1000006); c00024_3300026.. (original name was: 3300026519.a:Ga0256839_1000088); c00025_3300026.. (original name was: 3300026519.a:Ga0256839_1000068); c00026_3300026.. (original name was: 3300026519.a:Ga0256839_1003912); c00028_3300026.. (original name was: 3300026519.a:Ga0256839_1000160); c00029_3300026.. (original name was: 3300026519.a:Ga0256839_1000051); c00030_3300026.. (original name was: 3300026519.a:Ga0256839_1000340); c00031_3300026.. (original name was: 3300026519.a:Ga0256839_1000014); c00032_3300026.. (original name was: 3300026519.a:Ga0256839_1000322); c00033_3300026.. (original name was: 3300026519.a:Ga0256839_1000995); c00034_3300026.. (original name was: 3300026519.a:Ga0256839_1000722); c00035_3300026.. (original name was: 3300026519.a:Ga0256839_1000427); c00036_3300026.. (original name was: 3300026519.a:Ga0256839_1001175); c00037_3300026.. (original name was: 3300026519.a:Ga0256839_1007550); c00038_3300026.. (original name was: 3300026519.a:Ga0256839_1000094); c00039_3300026.. (original name was: 3300026519.a:Ga0256839_1000217); c00040_3300026.. (original name was: 3300026519.a:Ga0256839_1000370); c00041_3300026.. (original name was: 3300026519.a:Ga0256839_1001165); c00042_3300026.. (original name was: 3300026519.a:Ga0256839_1000450)

Compact view

c00027_3300026.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 34,580 nt. (total: 34,580 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 34580:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - mal - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_4

Search NORINE for peptide: strict or relaxed

AMP-binding (20..424): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVllnSLVnK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

PKS_AT (1508..1802): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 62.5%; 2-Rhyd-Malonyl-CoA: 58.3%; inactive: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 129.7
inactive: 73.1
Methoxymalonyl-CoA: 51.8
Methylmalonyl-CoA: 46.6
Benzoyl-CoA: 20.6
Isobutyryl-CoA: 18.6
Propionyl-CoA: 13.2
Ethylmalonyl-CoA: 11.0
fatty_acid: 10.4
trans-1,2-CPDA: 0.0
CHC-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

AMP-binding (3023..3417): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmpqVGGiYK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)