3300026972_1 - 34 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_3300026.. (original name was: 3300026972.a:Ga0207848_100059)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS,T1PKS,amglyccycl	1	42,709
Region 4.2	terpene	64,576	85,667

c00009_3300026.. (original name was: 3300026972.a:Ga0207848_100067)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	T1PKS	16,498	62,332

c00011_3300026.. (original name was: 3300026972.a:Ga0207848_100022)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	bacteriocin	123,208	134,065

c00012_3300026.. (original name was: 3300026972.a:Ga0207848_100160)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	amglyccycl	1	17,374

c00014_3300026.. (original name was: 3300026972.a:Ga0207848_100228)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	1	31,759

c00016_3300026.. (original name was: 3300026972.a:Ga0207848_100046)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	bacteriocin	97,171	109,123

c00018_3300026.. (original name was: 3300026972.a:Ga0207848_100128)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	NRPS,T1PKS	29	53,611

c00022_3300026.. (original name was: 3300026972.a:Ga0207848_100034)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	siderophore	150,144	157,789

c00025_3300026.. (original name was: 3300026972.a:Ga0207848_100081)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	T3PKS	56,756	80,007

c00028_3300026.. (original name was: 3300026972.a:Ga0207848_100030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	NRPS	117,459	168,936

c00030_3300026.. (original name was: 3300026972.a:Ga0207848_100144)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	NRPS,T1PKS	1	49,018

c00032_3300026.. (original name was: 3300026972.a:Ga0207848_100145)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	siderophore	4,182	16,566

c00036_3300026.. (original name was: 3300026972.a:Ga0207848_100035)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	T2PKS	1	62,993

c00037_3300026.. (original name was: 3300026972.a:Ga0207848_100044)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	lanthipeptide	1	20,468

c00039_3300026.. (original name was: 3300026972.a:Ga0207848_100042)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	PKS-like	46,962	87,975

c00043_3300026.. (original name was: 3300026972.a:Ga0207848_100055)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	terpene	46,060	67,076

c00046_3300026.. (original name was: 3300026972.a:Ga0207848_100111)

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	terpene	5,748	27,424

c00055_3300026.. (original name was: 3300026972.a:Ga0207848_100026)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	terpene	125,005	146,063

c00058_3300026.. (original name was: 3300026972.a:Ga0207848_100049)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS	2,257	59,603

c00063_3300026.. (original name was: 3300026972.a:Ga0207848_100140)

Region	Type	From	To	Most similar known cluster		Similarity
Region 63.1	T1PKS	11,118	51,250

c00064_3300026.. (original name was: 3300026972.a:Ga0207848_100207)

Region	Type	From	To	Most similar known cluster		Similarity
Region 64.1	bacteriocin	7,581	19,551

c00074_3300026.. (original name was: 3300026972.a:Ga0207848_100528)

Region	Type	From	To	Most similar known cluster		Similarity
Region 74.1	T1PKS	1	12,950

c00087_3300026.. (original name was: 3300026972.a:Ga0207848_100072)

Region	Type	From	To	Most similar known cluster		Similarity
Region 87.1	thiopeptide,LAP	12,762	43,628

c00092_3300026.. (original name was: 3300026972.a:Ga0207848_100096)

Region	Type	From	To	Most similar known cluster		Similarity
Region 92.1	NRPS	33,022	71,647

c00097_3300026.. (original name was: 3300026972.a:Ga0207848_100143)

Region	Type	From	To	Most similar known cluster		Similarity
Region 97.1	PKS-like,NRPS-like	1	33,321

c00106_3300026.. (original name was: 3300026972.a:Ga0207848_100273)

Region	Type	From	To	Most similar known cluster		Similarity
Region 106.1	lanthipeptide	1	14,700

c00108_3300026.. (original name was: 3300026972.a:Ga0207848_100074)

Region	Type	From	To	Most similar known cluster		Similarity
Region 108.1	NRPS	12,272	64,331

c00109_3300026.. (original name was: 3300026972.a:Ga0207848_100231)

Region	Type	From	To	Most similar known cluster		Similarity
Region 109.1	T1PKS	5,975	31,857

c00113_3300026.. (original name was: 3300026972.a:Ga0207848_100054)

Region	Type	From	To	Most similar known cluster		Similarity
Region 113.1	bacteriocin	39,448	51,304

c00114_3300026.. (original name was: 3300026972.a:Ga0207848_100077)

Region	Type	From	To	Most similar known cluster		Similarity
Region 114.1	terpene	1	19,440

c00115_3300026.. (original name was: 3300026972.a:Ga0207848_100174)

Region	Type	From	To	Most similar known cluster		Similarity
Region 115.1	NAGGN,betalactone	16,013	41,384

c00120_3300026.. (original name was: 3300026972.a:Ga0207848_100167)

Region	Type	From	To	Most similar known cluster		Similarity
Region 120.1	lanthipeptide	1	19,100

c00122_3300026.. (original name was: 3300026972.a:Ga0207848_100015)

Region	Type	From	To	Most similar known cluster		Similarity
Region 122.1	T2PKS	100,986	173,465

Region	Type	From	To	Similarity
Region 4.1	NRPS,T1PKS,amglyccycl	1	42,709
Region 4.2	terpene	64,576	85,667
Region 9.1	T1PKS	16,498	62,332
Region 11.1	bacteriocin	123,208	134,065
Region 12.1	amglyccycl	1	17,374
Region 14.1	NRPS	1	31,759
Region 16.1	bacteriocin	97,171	109,123
Region 18.1	NRPS,T1PKS	29	53,611
Region 22.1	siderophore	150,144	157,789
Region 25.1	T3PKS	56,756	80,007
Region 28.1	NRPS	117,459	168,936
Region 30.1	NRPS,T1PKS	1	49,018
Region 32.1	siderophore	4,182	16,566
Region 36.1	T2PKS	1	62,993
Region 37.1	lanthipeptide	1	20,468
Region 39.1	PKS-like	46,962	87,975
Region 43.1	terpene	46,060	67,076
Region 46.1	terpene	5,748	27,424
Region 55.1	terpene	125,005	146,063
Region 58.1	NRPS	2,257	59,603
Region 63.1	T1PKS	11,118	51,250
Region 64.1	bacteriocin	7,581	19,551
Region 74.1	T1PKS	1	12,950
Region 87.1	thiopeptide,LAP	12,762	43,628
Region 92.1	NRPS	33,022	71,647
Region 97.1	PKS-like,NRPS-like	1	33,321
Region 106.1	lanthipeptide	1	14,700
Region 108.1	NRPS	12,272	64,331
Region 109.1	T1PKS	5,975	31,857
Region 113.1	bacteriocin	39,448	51,304
Region 114.1	terpene	1	19,440
Region 115.1	NAGGN,betalactone	16,013	41,384
Region 120.1	lanthipeptide	1	19,100
Region 122.1	T2PKS	100,986	173,465

No secondary metabolite regions were found in these records:: c00001_3300026.. (original name was: 3300026972.a:Ga0207848_102141); c00002_3300026.. (original name was: 3300026972.a:Ga0207848_100441); c00003_3300026.. (original name was: 3300026972.a:Ga0207848_100090); c00005_3300026.. (original name was: 3300026972.a:Ga0207848_100216); c00006_3300026.. (original name was: 3300026972.a:Ga0207848_100108); c00007_3300026.. (original name was: 3300026972.a:Ga0207848_100265); c00008_3300026.. (original name was: 3300026972.a:Ga0207848_100726); c00010_3300026.. (original name was: 3300026972.a:Ga0207848_100161); c00013_3300026.. (original name was: 3300026972.a:Ga0207848_100078); c00015_3300026.. (original name was: 3300026972.a:Ga0207848_100178); c00017_3300026.. (original name was: 3300026972.a:Ga0207848_100220); c00019_3300026.. (original name was: 3300026972.a:Ga0207848_100193); c00020_3300026.. (original name was: 3300026972.a:Ga0207848_100125); c00021_3300026.. (original name was: 3300026972.a:Ga0207848_100222); c00023_3300026.. (original name was: 3300026972.a:Ga0207848_100092); c00024_3300026.. (original name was: 3300026972.a:Ga0207848_100383); c00026_3300026.. (original name was: 3300026972.a:Ga0207848_100280); c00027_3300026.. (original name was: 3300026972.a:Ga0207848_100045); c00029_3300026.. (original name was: 3300026972.a:Ga0207848_100047); c00031_3300026.. (original name was: 3300026972.a:Ga0207848_100048); c00033_3300026.. (original name was: 3300026972.a:Ga0207848_101122); c00034_3300026.. (original name was: 3300026972.a:Ga0207848_100127); c00035_3300026.. (original name was: 3300026972.a:Ga0207848_100326); c00038_3300026.. (original name was: 3300026972.a:Ga0207848_100241); c00040_3300026.. (original name was: 3300026972.a:Ga0207848_100136); c00041_3300026.. (original name was: 3300026972.a:Ga0207848_100159); c00042_3300026.. (original name was: 3300026972.a:Ga0207848_100100); c00044_3300026.. (original name was: 3300026972.a:Ga0207848_100263); c00045_3300026.. (original name was: 3300026972.a:Ga0207848_100305); c00047_3300026.. (original name was: 3300026972.a:Ga0207848_101320); c00048_3300026.. (original name was: 3300026972.a:Ga0207848_100126); c00049_3300026.. (original name was: 3300026972.a:Ga0207848_100665); c00050_3300026.. (original name was: 3300026972.a:Ga0207848_100267); c00051_3300026.. (original name was: 3300026972.a:Ga0207848_100497); c00052_3300026.. (original name was: 3300026972.a:Ga0207848_100411); c00053_3300026.. (original name was: 3300026972.a:Ga0207848_100261); c00054_3300026.. (original name was: 3300026972.a:Ga0207848_100225); c00056_3300026.. (original name was: 3300026972.a:Ga0207848_100190); c00057_3300026.. (original name was: 3300026972.a:Ga0207848_100447); c00059_3300026.. (original name was: 3300026972.a:Ga0207848_100146); c00060_3300026.. (original name was: 3300026972.a:Ga0207848_101348); c00061_3300026.. (original name was: 3300026972.a:Ga0207848_100154); c00062_3300026.. (original name was: 3300026972.a:Ga0207848_100057); c00065_3300026.. (original name was: 3300026972.a:Ga0207848_100406); c00066_3300026.. (original name was: 3300026972.a:Ga0207848_101401); c00067_3300026.. (original name was: 3300026972.a:Ga0207848_100375); c00068_3300026.. (original name was: 3300026972.a:Ga0207848_100191); c00069_3300026.. (original name was: 3300026972.a:Ga0207848_100028); c00070_3300026.. (original name was: 3300026972.a:Ga0207848_100426); c00071_3300026.. (original name was: 3300026972.a:Ga0207848_100038); c00072_3300026.. (original name was: 3300026972.a:Ga0207848_100130); c00073_3300026.. (original name was: 3300026972.a:Ga0207848_101324); c00075_3300026.. (original name was: 3300026972.a:Ga0207848_100329); c00076_3300026.. (original name was: 3300026972.a:Ga0207848_100097); c00077_3300026.. (original name was: 3300026972.a:Ga0207848_100194); c00078_3300026.. (original name was: 3300026972.a:Ga0207848_100297); c00079_3300026.. (original name was: 3300026972.a:Ga0207848_100019); c00080_3300026.. (original name was: 3300026972.a:Ga0207848_100252); c00081_3300026.. (original name was: 3300026972.a:Ga0207848_100053); c00082_3300026.. (original name was: 3300026972.a:Ga0207848_100250); c00083_3300026.. (original name was: 3300026972.a:Ga0207848_100056); c00084_3300026.. (original name was: 3300026972.a:Ga0207848_100060); c00085_3300026.. (original name was: 3300026972.a:Ga0207848_100448); c00086_3300026.. (original name was: 3300026972.a:Ga0207848_100065); c00088_3300026.. (original name was: 3300026972.a:Ga0207848_100118); c00089_3300026.. (original name was: 3300026972.a:Ga0207848_100275); c00090_3300026.. (original name was: 3300026972.a:Ga0207848_100076); c00091_3300026.. (original name was: 3300026972.a:Ga0207848_100270); c00093_3300026.. (original name was: 3300026972.a:Ga0207848_100138); c00094_3300026.. (original name was: 3300026972.a:Ga0207848_100332); c00095_3300026.. (original name was: 3300026972.a:Ga0207848_100041); c00096_3300026.. (original name was: 3300026972.a:Ga0207848_100240); c00098_3300026.. (original name was: 3300026972.a:Ga0207848_100762); c00099_3300026.. (original name was: 3300026972.a:Ga0207848_100769); c00100_3300026.. (original name was: 3300026972.a:Ga0207848_100197); c00101_3300026.. (original name was: 3300026972.a:Ga0207848_100595); c00102_3300026.. (original name was: 3300026972.a:Ga0207848_100909); c00103_3300026.. (original name was: 3300026972.a:Ga0207848_100510); c00104_3300026.. (original name was: 3300026972.a:Ga0207848_100898); c00105_3300026.. (original name was: 3300026972.a:Ga0207848_100981); c00107_3300026.. (original name was: 3300026972.a:Ga0207848_100671); c00110_3300026.. (original name was: 3300026972.a:Ga0207848_100425); c00111_3300026.. (original name was: 3300026972.a:Ga0207848_100636); c00112_3300026.. (original name was: 3300026972.a:Ga0207848_101646); c00116_3300026.. (original name was: 3300026972.a:Ga0207848_100530); c00117_3300026.. (original name was: 3300026972.a:Ga0207848_100132); c00118_3300026.. (original name was: 3300026972.a:Ga0207848_100331); c00119_3300026.. (original name was: 3300026972.a:Ga0207848_100489); c00121_3300026.. (original name was: 3300026972.a:Ga0207848_100214)

Compact view

c00004_3300026.. - Region 1 - NRPS,T1PKS,amglyccycl

Download region GenBank file

Location: 1 - 42,709 nt. (total: 42,709 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
amglyccycl: (strH or strK1 or strK2 or NeoL or DOIS or ValA or SpcFG or SpcDK_glyc or salQ)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 42709:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (val) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 26105:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (val) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_7

PKS_AT (531..808): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 66.7%; 2-Methylbutyryl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 121.3
Methoxymalonyl-CoA: 67.6
Methylmalonyl-CoA: 55.0
inactive: 42.5
Propionyl-CoA: 28.2
CHC-CoA: 27.3
2-Methylbutyryl-CoA: 23.4
Ethylmalonyl-CoA: 18.2
Isobutyryl-CoA: 15.6
trans-1,2-CPDA: 11.1
Acetyl-CoA: 10.1
fatty_acid: 7.1
Benzoyl-CoA: 3.9
3-Methylbutyryl-CoA: 0.0

ctg4_9

Search NORINE for peptide: strict or relaxed

AMP-binding (22..412): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALWmGGvFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

ctg4_19

Search NORINE for peptide: strict or relaxed

AMP-binding (43..438): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

c00004_3300026.. - Region 2 - terpene

Download region GenBank file

Location: 64,576 - 85,667 nt. (total: 21,092 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

c00009_3300026.. - Region 1 - T1PKS

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Location: 16,498 - 62,332 nt. (total: 45,835 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00011_3300026.. - Region 1 - bacteriocin

Download region GenBank file

Location: 123,208 - 134,065 nt. (total: 10,858 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

c00012_3300026.. - Region 1 - amglyccycl

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Location: 1 - 17,374 nt. (total: 17,374 nt) Show pHMM detection rules used

Region on contig edge.

amglyccycl: (strH or strK1 or strK2 or NeoL or DOIS or ValA or SpcFG or SpcDK_glyc or salQ)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

c00014_3300026.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 31,759 nt. (total: 31,759 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31759:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_6

Search NORINE for peptide: strict or relaxed

AMP-binding (427..859): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1534..1936): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIsqLvK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

c00016_3300026.. - Region 1 - bacteriocin

Download region GenBank file

Location: 97,171 - 109,123 nt. (total: 11,953 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00018_3300026.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 29 - 53,611 nt. (total: 53,583 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 28 - 53611:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_20

Search NORINE for peptide: strict or relaxed

AMP-binding (29..428): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFenHmVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

ctg18_25

Search NORINE for peptide: strict or relaxed

AMP-binding (14..414): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNViK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

ctg18_26

PKS_AT (522..817): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 58.3%; Ethylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 131.2
Methoxymalonyl-CoA: 84.1
Methylmalonyl-CoA: 67.3
inactive: 65.0
Propionyl-CoA: 47.3
Ethylmalonyl-CoA: 47.0
CHC-CoA: 40.5
2-Methylbutyryl-CoA: 30.3
Acetyl-CoA: 29.2
Isobutyryl-CoA: 27.1
trans-1,2-CPDA: 24.9
fatty_acid: 24.3
Benzoyl-CoA: 22.9
3-Methylbutyryl-CoA: 21.6

c00022_3300026.. - Region 1 - siderophore

Download region GenBank file

Location: 150,144 - 157,789 nt. (total: 7,646 nt) Show pHMM detection rules used

Region on contig edge.

siderophore: IucA_IucC

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c00025_3300026.. - Region 1 - T3PKS

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Location: 56,756 - 80,007 nt. (total: 23,252 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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c00028_3300026.. - Region 1 - NRPS

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Location: 117,459 - 168,936 nt. (total: 51,478 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 117458 - 168936:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg28_132

Search NORINE for peptide: strict or relaxed

CAL_domain (146..455): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 47.7
NH2: 39.4
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (2353..2758): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DArshGLInK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

c00030_3300026.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 49,018 nt. (total: 49,018 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 49018:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - X) + (thr) + (hpg) + (X - ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg30_4

Search NORINE for peptide: strict or relaxed

PKS_AT (569..859): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; Methylmalonyl-CoA: 62.5%; Methoxymalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 111.7
Methylmalonyl-CoA: 83.1
Methoxymalonyl-CoA: 73.3
inactive: 67.7
Ethylmalonyl-CoA: 49.8
Isobutyryl-CoA: 47.7
Propionyl-CoA: 43.8
Benzoyl-CoA: 41.6
2-Methylbutyryl-CoA: 28.1
fatty_acid: 27.6
CHC-CoA: 27.0
trans-1,2-CPDA: 26.4
Acetyl-CoA: 25.2
3-Methylbutyryl-CoA: 13.6

AMP-binding (2413..2819): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALmTGvViK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

ctg30_17

Search NORINE for peptide: strict or relaxed

AMP-binding (18..417): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg30_21

Search NORINE for peptide: strict or relaxed

AMP-binding (12..438): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: shqvprGTlK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 30% (weak)

ctg30_22

Search NORINE for peptide: strict or relaxed

CAL_domain (60..484): pk

minowa: NH2

Prediction, score:

NH2: 101.6
Acetyl-CoA: 24.4
AHBA: 5.1
fatty_acid: 3.3
shikimic_acid: -3.2

AMP-binding (1135..1530): hpg

NRPSPredictor2: hpg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALHvGLLnK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 80% (moderate)

ctg30_23

Search NORINE for peptide: strict or relaxed

AMP-binding (260..667): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlknVGsdVK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 50% (weak)

AMP-binding (1323..1694): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

c00032_3300026.. - Region 1 - siderophore

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Location: 4,182 - 16,566 nt. (total: 12,385 nt) Show pHMM detection rules used

siderophore: IucA_IucC

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c00036_3300026.. - Region 1 - T2PKS

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Location: 1 - 62,993 nt. (total: 62,993 nt) Show pHMM detection rules used

Region on contig edge.

T2PKS: (t2ks and t2clf)

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

Type II PKS

Type II PKS gene cluster prediction details

Cluster section:: 0 to 62993
Starter unit(s):: acetyl-CoA (Score: 0.0; E-value: 0)
Product class(es):: pentangular polyphenol
tetracenomycin

ctg36_19: CYC C4-C21/C2-C23|C2-C19 (Score: 139.6; E-value: 7.9e-44)
ctg36_23: CYC C9-C14 (Score: 236.2; E-value: 2.7e-73)
ctg36_24: CYC C5-C18 (Score: 191.8; E-value: 8.9e-60)
ctg36_25: KS (Score: 706.8; E-value: 1.9e-215)
ctg36_26: CLF (Score: 499.8; E-value: 1.2e-152)
ctg36_40: KR (Score: 60.3; E-value: 5.4e-19)

c00037_3300026.. - Region 1 - lanthipeptide

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Location: 1 - 20,468 nt. (total: 20,468 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00039_3300026.. - Region 1 - PKS-like

Download region GenBank file

Location: 46,962 - 87,975 nt. (total: 41,014 nt) Show pHMM detection rules used

PKS-like: (t2pks2 or ksIII)

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c00043_3300026.. - Region 1 - terpene

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Location: 46,060 - 67,076 nt. (total: 21,017 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00046_3300026.. - Region 1 - terpene

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Location: 5,748 - 27,424 nt. (total: 21,677 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00055_3300026.. - Region 1 - terpene

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Location: 125,005 - 146,063 nt. (total: 21,059 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00058_3300026.. - Region 1 - NRPS

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Location: 2,257 - 59,603 nt. (total: 57,347 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

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c00063_3300026.. - Region 1 - T1PKS

Download region GenBank file

Location: 11,118 - 51,250 nt. (total: 40,133 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 11117 - 51250:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-redmal) + (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg63_33

PKS_AT (1828..2119): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 87.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 165.6
inactive: 106.3
Methoxymalonyl-CoA: 67.2
Methylmalonyl-CoA: 54.3
Isobutyryl-CoA: 41.6
Propionyl-CoA: 35.8
Benzoyl-CoA: 28.8
Ethylmalonyl-CoA: 24.8
2-Methylbutyryl-CoA: 23.7
CHC-CoA: 22.2
fatty_acid: 21.1
Acetyl-CoA: 20.7
3-Methylbutyryl-CoA: 19.8
trans-1,2-CPDA: 15.6

ctg63_34

PKS_AT (549..846): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 91.7%; Methoxymalonyl-CoA: 83.3%; Malonyl-CoA: 83.3%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 148.9
Ethylmalonyl-CoA: 119.3
Methoxymalonyl-CoA: 112.3
Malonyl-CoA: 86.6
trans-1,2-CPDA: 76.9
Isobutyryl-CoA: 70.6
2-Methylbutyryl-CoA: 69.7
Propionyl-CoA: 69.5
CHC-CoA: 64.6
Benzoyl-CoA: 52.9
Acetyl-CoA: 52.3
3-Methylbutyryl-CoA: 42.8
inactive: 25.7
fatty_acid: 18.8

c00064_3300026.. - Region 1 - bacteriocin

Download region GenBank file

Location: 7,581 - 19,551 nt. (total: 11,971 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00074_3300026.. - Region 1 - T1PKS

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Location: 1 - 12,950 nt. (total: 12,950 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

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c00087_3300026.. - Region 1 - LAP,thiopeptide

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Location: 12,762 - 43,628 nt. (total: 30,867 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

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Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

c00092_3300026.. - Region 1 - NRPS

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Location: 33,022 - 71,647 nt. (total: 38,626 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 33021 - 71647:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg92_43

Search NORINE for peptide: strict or relaxed

AMP-binding (168..561): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGmVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

AMP-binding (1573..1966): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmfIGGilK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

c00097_3300026.. - Region 1 - NRPS-like,PKS-like

Download region GenBank file

Location: 1 - 33,321 nt. (total: 33,321 nt) Show pHMM detection rules used

Region on contig edge.

PKS-like: (t2pks2 or ksIII)
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33321:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 23830:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg97_4

Search NORINE for peptide: strict or relaxed

AMP-binding (28..426): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAQDfAlVNK
Nearest Stachelhaus code:: LDAP
Stachelhaus code match:: 80% (moderate)

c00106_3300026.. - Region 1 - lanthipeptide

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Location: 1 - 14,700 nt. (total: 14,700 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptide(s) for ctg106_3 - Putative Class II

ctg106_1 leader / core peptide: MAVAAAPLSRLTDELSG - DhbLDhaDhbPEDPEYVDCRLP
allorf_06758_06892 leader / core peptide: MAEHDVPALGGEPRGDAQPEAGG - GPGDDDGDhaHRCAPFDRLDhbLDhaDhb

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg106_1 - Class II

Cleavage pHMM score: -7.30

RODEO score: 0

Monoisotopic mass: 1779.8 Da

Molecular weight: 1780.9 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 1799.0 Da N = 1; 1817.0 Da N = 2

allorf_06758_06892 - Class II

Cleavage pHMM score: -6.50

RODEO score: 0

Monoisotopic mass: 2144.0 Da

Molecular weight: 2145.3 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2163.3 Da N = 1; 2181.3 Da N = 2; 2199.3 Da N = 3

c00108_3300026.. - Region 1 - NRPS

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Location: 12,272 - 64,331 nt. (total: 52,060 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 12271 - 64331:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg108_29

Search NORINE for peptide: strict or relaxed

AMP-binding (465..862): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DIvQVGgIyK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg108_30

Search NORINE for peptide: strict or relaxed

AMP-binding (24..416): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: nAtFLGypaK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg108_31

Search NORINE for peptide: strict or relaxed

AMP-binding (513..914): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DFTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

c00109_3300026.. - Region 1 - T1PKS

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Location: 5,975 - 31,857 nt. (total: 25,883 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00113_3300026.. - Region 1 - bacteriocin

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Location: 39,448 - 51,304 nt. (total: 11,857 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

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transport-related genes

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c00114_3300026.. - Region 1 - terpene

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Location: 1 - 19,440 nt. (total: 19,440 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

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c00115_3300026.. - Region 1 - NAGGN,betalactone

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Location: 16,013 - 41,384 nt. (total: 25,372 nt) Show pHMM detection rules used

Region on contig edge.

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))
betalactone: (HMGL-like and AMP-binding)

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c00120_3300026.. - Region 1 - lanthipeptide

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Location: 1 - 19,100 nt. (total: 19,100 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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core biosynthetic genes

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00122_3300026.. - Region 1 - T2PKS

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Location: 100,986 - 173,465 nt. (total: 72,480 nt) Show pHMM detection rules used

T2PKS: (t2ks and t2clf)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

TTA codons

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

Type II PKS

Type II PKS gene cluster prediction details

Cluster section:: 100985 to 173465
Starter unit(s):: acetyl-CoA (Score: 0.0; E-value: 0)
Malonyl elongations:: 8|9 (Score: 702.2; E-value: 3.8e-214)
Product molecular weight(s):: acetyl-CoA_8: 552.61 Da
acetyl-CoA_9: 594.65 Da

ctg122_121: KR (Score: 73.6; E-value: 4.7e-23)
ctg122_126: KR (Score: 65.3; E-value: 1.6e-20)
ctg122_129: CYC C5-C14 (Score: 478.6; E-value: 1.5e-146)
ctg122_130: KS (Score: 772.8; E-value: 1.8e-235)
ctg122_131: CLF 8|9 (Score: 702.2; E-value: 3.8e-214)
ctg122_132: ACP (Score: 119.4; E-value: 1.2e-37)
ctg122_133: KR C9 (Score: 474.7; E-value: 1.6e-145)
ctg122_134: CYC C7-C12 (Score: 481.8; E-value: 1.6e-147)
ctg122_137: KR (Score: 100.5; E-value: 2.8e-31)
ctg122_143: MET (Score: 28.4; E-value: 2e-09)
ctg122_144: KR (Score: 193.8; E-value: 1e-59)
ctg122_146: GT (Score: 393.1; E-value: 4.2e-120)