3300027022_1 - 33 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_3300027.. (original name was: 3300027022.a:Ga0207774_100182)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	amglyccycl	26,506	46,124

c00005_3300027.. (original name was: 3300027022.a:Ga0207774_100113)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	T1PKS,NRPS	17,302	70,884

c00009_3300027.. (original name was: 3300027022.a:Ga0207774_100236)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS	1	31,759

c00017_3300027.. (original name was: 3300027022.a:Ga0207774_100068)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	PKS-like	4,132	45,145

c00019_3300027.. (original name was: 3300027022.a:Ga0207774_100019)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	T1PKS,siderophore	1	54,190
Region 19.2	NRPS	157,671	215,017

c00022_3300027.. (original name was: 3300027022.a:Ga0207774_100058)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	bacteriocin	88,359	100,329

c00025_3300027.. (original name was: 3300027022.a:Ga0207774_100027)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	bacteriocin	78,076	88,933

c00026_3300027.. (original name was: 3300027022.a:Ga0207774_100017)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	amglyccycl	140,369	161,553

c00033_3300027.. (original name was: 3300027022.a:Ga0207774_100092)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	T2PKS	3,762	76,331

c00037_3300027.. (original name was: 3300027022.a:Ga0207774_100094)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	terpene	23,324	44,382

c00049_3300027.. (original name was: 3300027022.a:Ga0207774_100082)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	T1PKS	28,890	74,826

c00059_3300027.. (original name was: 3300027022.a:Ga0207774_100041)

Region	Type	From	To	Most similar known cluster		Similarity
Region 59.1	bacteriocin	28,455	40,407

c00060_3300027.. (original name was: 3300027022.a:Ga0207774_100138)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	NRPS	27,431	62,907

c00067_3300027.. (original name was: 3300027022.a:Ga0207774_100012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 67.1	T3PKS	3,090	44,163
Region 67.2	bacteriocin	270,283	282,139

c00070_3300027.. (original name was: 3300027022.a:Ga0207774_100331)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	lanthipeptide	1	18,330

c00073_3300027.. (original name was: 3300027022.a:Ga0207774_100030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	siderophore	72,449	85,819
Region 73.2	NAGGN,betalactone	96,099	133,947

c00082_3300027.. (original name was: 3300027022.a:Ga0207774_100104)

Region	Type	From	To	Most similar known cluster		Similarity
Region 82.1	NRPS	1	27,136

c00085_3300027.. (original name was: 3300027022.a:Ga0207774_100153)

Region	Type	From	To	Most similar known cluster		Similarity
Region 85.1	NRPS,T1PKS,amglyccycl	1	43,432

c00086_3300027.. (original name was: 3300027022.a:Ga0207774_100106)

Region	Type	From	To	Most similar known cluster		Similarity
Region 86.1	terpene	46,060	67,076

c00093_3300027.. (original name was: 3300027022.a:Ga0207774_100060)

Region	Type	From	To	Most similar known cluster		Similarity
Region 93.1	lanthipeptide	90,424	110,891

c00094_3300027.. (original name was: 3300027022.a:Ga0207774_100157)

Region	Type	From	To	Most similar known cluster		Similarity
Region 94.1	terpene	28,146	49,237

c00095_3300027.. (original name was: 3300027022.a:Ga0207774_100083)

Region	Type	From	To	Most similar known cluster		Similarity
Region 95.1	T2PKS	1	59,146

c00097_3300027.. (original name was: 3300027022.a:Ga0207774_100044)

Region	Type	From	To	Most similar known cluster		Similarity
Region 97.1	PKS-like,NRPS-like	1	31,573
Region 97.2	NRPS	60,524	112,583

c00100_3300027.. (original name was: 3300027022.a:Ga0207774_100169)

Region	Type	From	To	Most similar known cluster		Similarity
Region 100.1	T1PKS	1	41,755

c00103_3300027.. (original name was: 3300027022.a:Ga0207774_100043)

Region	Type	From	To	Most similar known cluster		Similarity
Region 103.1	lanthipeptide	62,095	84,992

c00110_3300027.. (original name was: 3300027022.a:Ga0207774_100145)

Region	Type	From	To	Most similar known cluster		Similarity
Region 110.1	NRPS,T1PKS	1	61,576

c00111_3300027.. (original name was: 3300027022.a:Ga0207774_100146)

Region	Type	From	To	Most similar known cluster		Similarity
Region 111.1	terpene	36,132	57,808

c00116_3300027.. (original name was: 3300027022.a:Ga0207774_100063)

Region	Type	From	To	Most similar known cluster		Similarity
Region 116.1	thiopeptide,LAP	76,952	107,517

c00118_3300027.. (original name was: 3300027022.a:Ga0207774_100091)

Region	Type	From	To	Most similar known cluster		Similarity
Region 118.1	terpene	1	19,447

Region	Type	From	To	Similarity
Region 2.1	amglyccycl	26,506	46,124
Region 5.1	T1PKS,NRPS	17,302	70,884
Region 9.1	NRPS	1	31,759
Region 17.1	PKS-like	4,132	45,145
Region 19.1	T1PKS,siderophore	1	54,190
Region 19.2	NRPS	157,671	215,017
Region 22.1	bacteriocin	88,359	100,329
Region 25.1	bacteriocin	78,076	88,933
Region 26.1	amglyccycl	140,369	161,553
Region 33.1	T2PKS	3,762	76,331
Region 37.1	terpene	23,324	44,382
Region 49.1	T1PKS	28,890	74,826
Region 59.1	bacteriocin	28,455	40,407
Region 60.1	NRPS	27,431	62,907
Region 67.1	T3PKS	3,090	44,163
Region 67.2	bacteriocin	270,283	282,139
Region 70.1	lanthipeptide	1	18,330
Region 73.1	siderophore	72,449	85,819
Region 73.2	NAGGN,betalactone	96,099	133,947
Region 82.1	NRPS	1	27,136
Region 85.1	NRPS,T1PKS,amglyccycl	1	43,432
Region 86.1	terpene	46,060	67,076
Region 93.1	lanthipeptide	90,424	110,891
Region 94.1	terpene	28,146	49,237
Region 95.1	T2PKS	1	59,146
Region 97.1	PKS-like,NRPS-like	1	31,573
Region 97.2	NRPS	60,524	112,583
Region 100.1	T1PKS	1	41,755
Region 103.1	lanthipeptide	62,095	84,992
Region 110.1	NRPS,T1PKS	1	61,576
Region 111.1	terpene	36,132	57,808
Region 116.1	thiopeptide,LAP	76,952	107,517
Region 118.1	terpene	1	19,447

No secondary metabolite regions were found in these records:: c00001_3300027.. (original name was: 3300027022.a:Ga0207774_100512); c00003_3300027.. (original name was: 3300027022.a:Ga0207774_100535); c00004_3300027.. (original name was: 3300027022.a:Ga0207774_100324); c00006_3300027.. (original name was: 3300027022.a:Ga0207774_100295); c00007_3300027.. (original name was: 3300027022.a:Ga0207774_100039); c00008_3300027.. (original name was: 3300027022.a:Ga0207774_100250); c00010_3300027.. (original name was: 3300027022.a:Ga0207774_100025); c00011_3300027.. (original name was: 3300027022.a:Ga0207774_100167); c00012_3300027.. (original name was: 3300027022.a:Ga0207774_100379); c00013_3300027.. (original name was: 3300027022.a:Ga0207774_100590); c00014_3300027.. (original name was: 3300027022.a:Ga0207774_100168); c00015_3300027.. (original name was: 3300027022.a:Ga0207774_100472); c00016_3300027.. (original name was: 3300027022.a:Ga0207774_100100); c00018_3300027.. (original name was: 3300027022.a:Ga0207774_100105); c00020_3300027.. (original name was: 3300027022.a:Ga0207774_100501); c00021_3300027.. (original name was: 3300027022.a:Ga0207774_100252); c00023_3300027.. (original name was: 3300027022.a:Ga0207774_100155); c00024_3300027.. (original name was: 3300027022.a:Ga0207774_100405); c00027_3300027.. (original name was: 3300027022.a:Ga0207774_100415); c00028_3300027.. (original name was: 3300027022.a:Ga0207774_100124); c00029_3300027.. (original name was: 3300027022.a:Ga0207774_100121); c00030_3300027.. (original name was: 3300027022.a:Ga0207774_100024); c00031_3300027.. (original name was: 3300027022.a:Ga0207774_100073); c00032_3300027.. (original name was: 3300027022.a:Ga0207774_100045); c00034_3300027.. (original name was: 3300027022.a:Ga0207774_100577); c00035_3300027.. (original name was: 3300027022.a:Ga0207774_100189); c00036_3300027.. (original name was: 3300027022.a:Ga0207774_100286); c00038_3300027.. (original name was: 3300027022.a:Ga0207774_100288); c00039_3300027.. (original name was: 3300027022.a:Ga0207774_100311); c00040_3300027.. (original name was: 3300027022.a:Ga0207774_100112); c00041_3300027.. (original name was: 3300027022.a:Ga0207774_100199); c00042_3300027.. (original name was: 3300027022.a:Ga0207774_100102); c00043_3300027.. (original name was: 3300027022.a:Ga0207774_100055); c00044_3300027.. (original name was: 3300027022.a:Ga0207774_100249); c00045_3300027.. (original name was: 3300027022.a:Ga0207774_100619); c00046_3300027.. (original name was: 3300027022.a:Ga0207774_100231); c00047_3300027.. (original name was: 3300027022.a:Ga0207774_101142); c00048_3300027.. (original name was: 3300027022.a:Ga0207774_100075); c00050_3300027.. (original name was: 3300027022.a:Ga0207774_101355); c00051_3300027.. (original name was: 3300027022.a:Ga0207774_100161); c00052_3300027.. (original name was: 3300027022.a:Ga0207774_100077); c00053_3300027.. (original name was: 3300027022.a:Ga0207774_100373); c00054_3300027.. (original name was: 3300027022.a:Ga0207774_100174); c00055_3300027.. (original name was: 3300027022.a:Ga0207774_100271); c00056_3300027.. (original name was: 3300027022.a:Ga0207774_100283); c00057_3300027.. (original name was: 3300027022.a:Ga0207774_100429); c00058_3300027.. (original name was: 3300027022.a:Ga0207774_100914); c00061_3300027.. (original name was: 3300027022.a:Ga0207774_100526); c00062_3300027.. (original name was: 3300027022.a:Ga0207774_100088); c00063_3300027.. (original name was: 3300027022.a:Ga0207774_100287); c00064_3300027.. (original name was: 3300027022.a:Ga0207774_101083); c00065_3300027.. (original name was: 3300027022.a:Ga0207774_100486); c00066_3300027.. (original name was: 3300027022.a:Ga0207774_100400); c00068_3300027.. (original name was: 3300027022.a:Ga0207774_100239); c00069_3300027.. (original name was: 3300027022.a:Ga0207774_100040); c00071_3300027.. (original name was: 3300027022.a:Ga0207774_100181); c00072_3300027.. (original name was: 3300027022.a:Ga0207774_100520); c00074_3300027.. (original name was: 3300027022.a:Ga0207774_100229); c00075_3300027.. (original name was: 3300027022.a:Ga0207774_100175); c00076_3300027.. (original name was: 3300027022.a:Ga0207774_100433); c00077_3300027.. (original name was: 3300027022.a:Ga0207774_100035); c00078_3300027.. (original name was: 3300027022.a:Ga0207774_100632); c00079_3300027.. (original name was: 3300027022.a:Ga0207774_100178); c00080_3300027.. (original name was: 3300027022.a:Ga0207774_100166); c00081_3300027.. (original name was: 3300027022.a:Ga0207774_100119); c00083_3300027.. (original name was: 3300027022.a:Ga0207774_100010); c00084_3300027.. (original name was: 3300027022.a:Ga0207774_100107); c00087_3300027.. (original name was: 3300027022.a:Ga0207774_100203); c00088_3300027.. (original name was: 3300027022.a:Ga0207774_100979); c00089_3300027.. (original name was: 3300027022.a:Ga0207774_100200); c00090_3300027.. (original name was: 3300027022.a:Ga0207774_100062); c00091_3300027.. (original name was: 3300027022.a:Ga0207774_100644); c00092_3300027.. (original name was: 3300027022.a:Ga0207774_100657); c00096_3300027.. (original name was: 3300027022.a:Ga0207774_100255); c00098_3300027.. (original name was: 3300027022.a:Ga0207774_100136); c00099_3300027.. (original name was: 3300027022.a:Ga0207774_100335); c00101_3300027.. (original name was: 3300027022.a:Ga0207774_100176); c00102_3300027.. (original name was: 3300027022.a:Ga0207774_100090); c00104_3300027.. (original name was: 3300027022.a:Ga0207774_100237); c00105_3300027.. (original name was: 3300027022.a:Ga0207774_100431); c00106_3300027.. (original name was: 3300027022.a:Ga0207774_100426); c00107_3300027.. (original name was: 3300027022.a:Ga0207774_100227); c00108_3300027.. (original name was: 3300027022.a:Ga0207774_100120); c00109_3300027.. (original name was: 3300027022.a:Ga0207774_100543); c00112_3300027.. (original name was: 3300027022.a:Ga0207774_100922); c00113_3300027.. (original name was: 3300027022.a:Ga0207774_100464); c00114_3300027.. (original name was: 3300027022.a:Ga0207774_100265); c00115_3300027.. (original name was: 3300027022.a:Ga0207774_100362); c00117_3300027.. (original name was: 3300027022.a:Ga0207774_100248)

Compact view

c00002_3300027.. - Region 1 - amglyccycl

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Location: 26,506 - 46,124 nt. (total: 19,619 nt) Show pHMM detection rules used

Region on contig edge.

amglyccycl: (strH or strK1 or strK2 or NeoL or DOIS or ValA or SpcFG or SpcDK_glyc or salQ)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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Gene details

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c00005_3300027.. - Region 1 - NRPS,T1PKS

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Location: 17,302 - 70,884 nt. (total: 53,583 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 17301 - 70884:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_44

PKS_AT (522..817): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 58.3%; Ethylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 131.2
Methoxymalonyl-CoA: 84.1
Methylmalonyl-CoA: 67.3
inactive: 65.0
Propionyl-CoA: 47.3
Ethylmalonyl-CoA: 47.0
CHC-CoA: 40.5
2-Methylbutyryl-CoA: 30.3
Acetyl-CoA: 29.2
Isobutyryl-CoA: 27.1
trans-1,2-CPDA: 24.9
fatty_acid: 24.3
Benzoyl-CoA: 22.9
3-Methylbutyryl-CoA: 21.6

ctg5_45

Search NORINE for peptide: strict or relaxed

AMP-binding (14..414): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNViK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

ctg5_50

Search NORINE for peptide: strict or relaxed

AMP-binding (29..428): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFenHmVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

c00009_3300027.. - Region 1 - NRPS

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Location: 1 - 31,759 nt. (total: 31,759 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31759:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg9_6

Search NORINE for peptide: strict or relaxed

AMP-binding (427..859): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1534..1936): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIsqlVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

c00017_3300027.. - Region 1 - PKS-like

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Location: 4,132 - 45,145 nt. (total: 41,014 nt) Show pHMM detection rules used

PKS-like: (t2pks2 or ksIII)

Legend:

core biosynthetic genes

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c00019_3300027.. - Region 1 - T1PKS,siderophore

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Location: 1 - 54,190 nt. (total: 54,190 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00019_3300027.. - Region 2 - NRPS

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Location: 157,671 - 215,017 nt. (total: 57,347 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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NRPS/PKS domains

Detailed domain annotation

Selected features only

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c00022_3300027.. - Region 1 - bacteriocin

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Location: 88,359 - 100,329 nt. (total: 11,971 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

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resistance

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c00025_3300027.. - Region 1 - bacteriocin

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Location: 78,076 - 88,933 nt. (total: 10,858 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

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c00026_3300027.. - Region 1 - amglyccycl

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Location: 140,369 - 161,553 nt. (total: 21,185 nt) Show pHMM detection rules used

amglyccycl: (strH or strK1 or strK2 or NeoL or DOIS or ValA or SpcFG or SpcDK_glyc or salQ)

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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resistance

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c00033_3300027.. - Region 1 - T2PKS

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Location: 3,762 - 76,331 nt. (total: 72,570 nt) Show pHMM detection rules used

T2PKS: (t2ks and t2clf)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

Type II PKS

Type II PKS gene cluster prediction details

Cluster section:: 3761 to 76331
Starter unit(s):: acetyl-CoA (Score: 0.0; E-value: 0)
Product class(es):: pentangular polyphenol
tetracenomycin

ctg33_32: CYC C4-C21/C2-C23|C2-C19 (Score: 139.6; E-value: 7.9e-44)
ctg33_36: CYC C9-C14 (Score: 236.2; E-value: 2.7e-73)
ctg33_37: CYC C5-C18 (Score: 191.8; E-value: 8.9e-60)
ctg33_38: KS (Score: 706.8; E-value: 1.9e-215)
ctg33_39: CLF (Score: 499.8; E-value: 1.2e-152)
ctg33_53: KR (Score: 60.3; E-value: 5.4e-19)

c00037_3300027.. - Region 1 - terpene

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Location: 23,324 - 44,382 nt. (total: 21,059 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00049_3300027.. - Region 1 - T1PKS

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Location: 28,890 - 74,826 nt. (total: 45,937 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

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c00059_3300027.. - Region 1 - bacteriocin

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Location: 28,455 - 40,407 nt. (total: 11,953 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00060_3300027.. - Region 1 - NRPS

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Location: 27,431 - 62,907 nt. (total: 35,477 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 27430 - 62907:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg60_52

Search NORINE for peptide: strict or relaxed

CAL_domain (146..455): pk

minowa: fatty_acid

Prediction, score:

fatty_acid: 47.7
NH2: 39.4
shikimic_acid: 0.0
Acetyl-CoA: 0.0
AHBA: 0.0

AMP-binding (2353..2758): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DArshGLInK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

c00067_3300027.. - Region 1 - T3PKS

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Location: 3,090 - 44,163 nt. (total: 41,074 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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c00067_3300027.. - Region 2 - bacteriocin

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Location: 270,283 - 282,139 nt. (total: 11,857 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00070_3300027.. - Region 1 - lanthipeptide

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Location: 1 - 18,330 nt. (total: 18,330 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00073_3300027.. - Region 1 - siderophore

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Location: 72,449 - 85,819 nt. (total: 13,371 nt) Show pHMM detection rules used

siderophore: IucA_IucC

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c00073_3300027.. - Region 2 - NAGGN,betalactone

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Location: 96,099 - 133,947 nt. (total: 37,849 nt) Show pHMM detection rules used

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))
betalactone: (HMGL-like and AMP-binding)

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c00082_3300027.. - Region 1 - NRPS

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Location: 1 - 27,136 nt. (total: 27,136 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

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Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 27136:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg82_1

Search NORINE for peptide: strict or relaxed

AMP-binding (168..561): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

AMP-binding (1573..1966): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmfIGGilK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

c00085_3300027.. - Region 1 - NRPS,T1PKS,amglyccycl

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Location: 1 - 43,432 nt. (total: 43,432 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
amglyccycl: (strH or strK1 or strK2 or NeoL or DOIS or ValA or SpcFG or SpcDK_glyc or salQ)

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 43432:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (val) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 26828:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (val) + (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg85_9

PKS_AT (531..808): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 110.2
Methoxymalonyl-CoA: 61.4
Methylmalonyl-CoA: 47.3
inactive: 37.1
2-Methylbutyryl-CoA: 25.9
CHC-CoA: 23.2
Propionyl-CoA: 22.7
Ethylmalonyl-CoA: 22.3
Acetyl-CoA: 14.1
trans-1,2-CPDA: 11.5
fatty_acid: 11.4
Isobutyryl-CoA: 8.9
Benzoyl-CoA: 8.8
3-Methylbutyryl-CoA: 0.0

ctg85_11

Search NORINE for peptide: strict or relaxed

AMP-binding (22..412): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALWmGGvFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

ctg85_21

Search NORINE for peptide: strict or relaxed

AMP-binding (43..438): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

c00086_3300027.. - Region 1 - terpene

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Location: 46,060 - 67,076 nt. (total: 21,017 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00093_3300027.. - Region 1 - lanthipeptide

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Location: 90,424 - 110,891 nt. (total: 20,468 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00094_3300027.. - Region 1 - terpene

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Location: 28,146 - 49,237 nt. (total: 21,092 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00095_3300027.. - Region 1 - T2PKS

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Location: 1 - 59,146 nt. (total: 59,146 nt) Show pHMM detection rules used

Region on contig edge.

T2PKS: (t2ks and t2clf)

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NRPS/PKS domains

Detailed domain annotation

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Type II PKS

Type II PKS gene cluster prediction details

Cluster section:: 0 to 59146
Starter unit(s):: acetyl-CoA (Score: 0.0; E-value: 0)
Malonyl elongations:: 8|9 (Score: 702.2; E-value: 3.8e-214)
Product molecular weight(s):: acetyl-CoA_8: 552.61 Da
acetyl-CoA_9: 594.65 Da

ctg95_10: KR (Score: 193.8; E-value: 1e-59)
ctg95_11: MET (Score: 28.4; E-value: 2e-09)
ctg95_17: KR (Score: 100.5; E-value: 2.8e-31)
ctg95_20: CYC C7-C12 (Score: 481.8; E-value: 1.6e-147)
ctg95_21: KR C9 (Score: 474.7; E-value: 1.6e-145)
ctg95_22: ACP (Score: 119.4; E-value: 1.2e-37)
ctg95_23: CLF 8|9 (Score: 702.2; E-value: 3.8e-214)
ctg95_24: KS (Score: 772.8; E-value: 1.8e-235)
ctg95_25: CYC C5-C14 (Score: 478.6; E-value: 1.5e-146)
ctg95_28: KR (Score: 65.3; E-value: 1.6e-20)
ctg95_33: KR (Score: 73.6; E-value: 4.7e-23)
ctg95_8: GT (Score: 393.1; E-value: 4.2e-120)

c00097_3300027.. - Region 1 - NRPS-like,PKS-like

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Location: 1 - 31,573 nt. (total: 31,573 nt) Show pHMM detection rules used

Region on contig edge.

PKS-like: (t2pks2 or ksIII)
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31573:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 28 - 17843:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg97_2

Search NORINE for peptide: strict or relaxed

AMP-binding (28..426): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAQDfAlVNK
Nearest Stachelhaus code:: LDAP
Stachelhaus code match:: 80% (moderate)

c00097_3300027.. - Region 2 - NRPS

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Location: 60,524 - 112,583 nt. (total: 52,060 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 3, location 60523 - 112583:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg97_63

Search NORINE for peptide: strict or relaxed

AMP-binding (465..862): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DIvQVGgIyK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg97_64

Search NORINE for peptide: strict or relaxed

AMP-binding (24..416): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: nAtFLGypaK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg97_65

Search NORINE for peptide: strict or relaxed

AMP-binding (513..914): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DFTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

c00100_3300027.. - Region 1 - T1PKS

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Location: 1 - 41,755 nt. (total: 41,755 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 41755:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-redmal) + (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg100_6

PKS_AT (549..846): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 91.7%; Methoxymalonyl-CoA: 83.3%; Malonyl-CoA: 83.3%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 148.9
Ethylmalonyl-CoA: 119.3
Methoxymalonyl-CoA: 112.3
Malonyl-CoA: 86.6
trans-1,2-CPDA: 76.9
Isobutyryl-CoA: 70.6
2-Methylbutyryl-CoA: 69.7
Propionyl-CoA: 69.5
CHC-CoA: 64.6
Benzoyl-CoA: 52.9
Acetyl-CoA: 52.3
3-Methylbutyryl-CoA: 42.8
inactive: 25.7
fatty_acid: 18.8

ctg100_7

PKS_AT (1828..2119): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 87.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 165.6
inactive: 106.3
Methoxymalonyl-CoA: 67.2
Methylmalonyl-CoA: 54.3
Isobutyryl-CoA: 41.6
Propionyl-CoA: 35.8
Benzoyl-CoA: 28.8
Ethylmalonyl-CoA: 24.8
2-Methylbutyryl-CoA: 23.7
CHC-CoA: 22.2
fatty_acid: 21.1
Acetyl-CoA: 20.7
3-Methylbutyryl-CoA: 19.8
trans-1,2-CPDA: 15.6

c00103_3300027.. - Region 1 - lanthipeptide

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Location: 62,095 - 84,992 nt. (total: 22,898 nt) Show pHMM detection rules used

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00110_3300027.. - Region 1 - NRPS,T1PKS

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Location: 1 - 61,576 nt. (total: 61,576 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 61576:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - X) + (thr) + (hpg) + (X - ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg110_5

Search NORINE for peptide: strict or relaxed

AMP-binding (260..667): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlknVGsdVK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 50% (weak)

AMP-binding (1323..1694): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg110_6

Search NORINE for peptide: strict or relaxed

CAL_domain (60..484): pk

minowa: NH2

Prediction, score:

NH2: 101.6
Acetyl-CoA: 24.4
AHBA: 5.1
fatty_acid: 3.3
shikimic_acid: -3.2

AMP-binding (1135..1530): hpg

NRPSPredictor2: hpg

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALHvGLLnK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 80% (moderate)

ctg110_7

Search NORINE for peptide: strict or relaxed

AMP-binding (12..438): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: shqvprGTlK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 30% (weak)

ctg110_11

Search NORINE for peptide: strict or relaxed

AMP-binding (18..417): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg110_23

Search NORINE for peptide: strict or relaxed

PKS_AT (569..859): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; Methylmalonyl-CoA: 62.5%; Methoxymalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 111.7
Methylmalonyl-CoA: 83.1
Methoxymalonyl-CoA: 73.3
inactive: 67.7
Ethylmalonyl-CoA: 49.8
Isobutyryl-CoA: 47.7
Propionyl-CoA: 43.8
Benzoyl-CoA: 41.6
2-Methylbutyryl-CoA: 28.1
fatty_acid: 27.6
CHC-CoA: 27.0
trans-1,2-CPDA: 26.4
Acetyl-CoA: 25.2
3-Methylbutyryl-CoA: 13.6

AMP-binding (2413..2819): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALmTGvViK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

ctg110_33

Search NORINE for peptide: strict or relaxed

AMP-binding (21..421): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hshFLaNhiK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 40% (weak)

c00111_3300027.. - Region 1 - terpene

Download region GenBank file

Location: 36,132 - 57,808 nt. (total: 21,677 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00116_3300027.. - Region 1 - LAP,thiopeptide

Download region GenBank file

Location: 76,952 - 107,517 nt. (total: 30,566 nt) Show pHMM detection rules used

Region on contig edge.

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

c00118_3300027.. - Region 1 - terpene

Download region GenBank file

Location: 1 - 19,447 nt. (total: 19,447 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it