3300027296_9 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00013_3300027.. (original name was: 3300027296.a:Ga0209389_1000013)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	bacteriocin	87,651	98,484

c00018_3300027.. (original name was: 3300027296.a:Ga0209389_1000085)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	T1PKS	48,574	85,224

c00023_3300027.. (original name was: 3300027296.a:Ga0209389_1000275)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS	1	32,245

c00030_3300027.. (original name was: 3300027296.a:Ga0209389_1000005)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	bacteriocin	113,024	123,857

c00031_3300027.. (original name was: 3300027296.a:Ga0209389_1000096)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	NRPS	1	58,048

c00034_3300027.. (original name was: 3300027296.a:Ga0209389_1000031)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NAGGN	6,284	21,175

Region	Type	From	To	Similarity
Region 13.1	bacteriocin	87,651	98,484
Region 18.1	T1PKS	48,574	85,224
Region 23.1	NRPS	1	32,245
Region 30.1	bacteriocin	113,024	123,857
Region 31.1	NRPS	1	58,048
Region 34.1	NAGGN	6,284	21,175

No secondary metabolite regions were found in these records:: c00001_3300027.. (original name was: 3300027296.a:Ga0209389_1047478); c00002_3300027.. (original name was: 3300027296.a:Ga0209389_1045980); c00003_3300027.. (original name was: 3300027296.a:Ga0209389_1038562); c00004_3300027.. (original name was: 3300027296.a:Ga0209389_1011725); c00005_3300027.. (original name was: 3300027296.a:Ga0209389_1001438); c00006_3300027.. (original name was: 3300027296.a:Ga0209389_1001156); c00007_3300027.. (original name was: 3300027296.a:Ga0209389_1000122); c00008_3300027.. (original name was: 3300027296.a:Ga0209389_1000209); c00009_3300027.. (original name was: 3300027296.a:Ga0209389_1000205); c00010_3300027.. (original name was: 3300027296.a:Ga0209389_1000053); c00011_3300027.. (original name was: 3300027296.a:Ga0209389_1000283); c00012_3300027.. (original name was: 3300027296.a:Ga0209389_1003256); c00014_3300027.. (original name was: 3300027296.a:Ga0209389_1000059); c00015_3300027.. (original name was: 3300027296.a:Ga0209389_1000082); c00016_3300027.. (original name was: 3300027296.a:Ga0209389_1000063); c00017_3300027.. (original name was: 3300027296.a:Ga0209389_1000038); c00019_3300027.. (original name was: 3300027296.a:Ga0209389_1000171); c00020_3300027.. (original name was: 3300027296.a:Ga0209389_1000112); c00021_3300027.. (original name was: 3300027296.a:Ga0209389_1000018); c00022_3300027.. (original name was: 3300027296.a:Ga0209389_1000183); c00024_3300027.. (original name was: 3300027296.a:Ga0209389_1000131); c00025_3300027.. (original name was: 3300027296.a:Ga0209389_1000037); c00026_3300027.. (original name was: 3300027296.a:Ga0209389_1000058); c00027_3300027.. (original name was: 3300027296.a:Ga0209389_1000152); c00028_3300027.. (original name was: 3300027296.a:Ga0209389_1001081); c00029_3300027.. (original name was: 3300027296.a:Ga0209389_1001707); c00032_3300027.. (original name was: 3300027296.a:Ga0209389_1000002); c00033_3300027.. (original name was: 3300027296.a:Ga0209389_1000078)

Compact view

c00013_3300027.. - Region 1 - bacteriocin

Download region GenBank file

Location: 87,651 - 98,484 nt. (total: 10,834 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00018_3300027.. - Region 1 - T1PKS

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Location: 48,574 - 85,224 nt. (total: 36,651 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 48573 - 85224:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_73

PKS_AT (535..833): pk

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; Methylmalonyl-CoA: 70.8%; CE-Malonyl-CoA: 62.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 111.4
Malonyl-CoA: 106.3
Methoxymalonyl-CoA: 97.4
Isobutyryl-CoA: 92.8
Ethylmalonyl-CoA: 79.5
trans-1,2-CPDA: 48.6
2-Methylbutyryl-CoA: 45.7
Propionyl-CoA: 45.5
Benzoyl-CoA: 37.1
fatty_acid: 35.1
Acetyl-CoA: 30.4
CHC-CoA: 27.7
inactive: 23.0
3-Methylbutyryl-CoA: 20.6

c00023_3300027.. - Region 1 - NRPS

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Location: 1 - 32,245 nt. (total: 32,245 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 32245:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg23_12

Search NORINE for peptide: strict or relaxed

CAL_domain (41..482): pk

minowa: NH2

Prediction, score:

NH2: 169.3
Acetyl-CoA: 50.7
AHBA: 14.8
fatty_acid: 14.4
shikimic_acid: -3.2

AMP-binding (1134..1531): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2185..2589): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3711..4117): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00030_3300027.. - Region 1 - bacteriocin

Download region GenBank file

Location: 113,024 - 123,857 nt. (total: 10,834 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00031_3300027.. - Region 1 - NRPS

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Location: 1 - 58,048 nt. (total: 58,048 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 58048:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asp - D-X - X) + (thr) + (gly) + (D-ser - ser) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg31_4

Search NORINE for peptide: strict or relaxed

AMP-binding (462..853): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg31_5

Search NORINE for peptide: strict or relaxed

AMP-binding (491..889): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (2001..2399): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg31_6

Search NORINE for peptide: strict or relaxed

AMP-binding (514..914): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg31_7

Search NORINE for peptide: strict or relaxed

AMP-binding (856..1263): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg31_8

Search NORINE for peptide: strict or relaxed

AMP-binding (514..915): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1571..1971): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgegSGgVtK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

AMP-binding (3091..3497): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00034_3300027.. - Region 1 - NAGGN

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Location: 6,284 - 21,175 nt. (total: 14,892 nt) Show pHMM detection rules used

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it