3300027498_10 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00001_3300027.. (original name was: 3300027498.a:Ga0209185_1000220)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS,T1PKS	1	66,728

c00004_3300027.. (original name was: 3300027498.a:Ga0209185_1000034)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS,T1PKS	2,396	57,323
Region 4.2	terpene	59,433	81,352

c00027_3300027.. (original name was: 3300027498.a:Ga0209185_1000234)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS	1	29,211

c00035_3300027.. (original name was: 3300027498.a:Ga0209185_1000748)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	T1PKS	1	33,974

c00055_3300027.. (original name was: 3300027498.a:Ga0209185_1000502)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	terpene	1,577	22,656

c00060_3300027.. (original name was: 3300027498.a:Ga0209185_1000085)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	terpene	1,123	22,064

Region	Type	From	To	Similarity
Region 1.1	NRPS,T1PKS	1	66,728
Region 4.1	NRPS,T1PKS	2,396	57,323
Region 4.2	terpene	59,433	81,352
Region 27.1	NRPS	1	29,211
Region 35.1	T1PKS	1	33,974
Region 55.1	terpene	1,577	22,656
Region 60.1	terpene	1,123	22,064

No secondary metabolite regions were found in these records:: c00002_3300027.. (original name was: 3300027498.a:Ga0209185_1000326); c00003_3300027.. (original name was: 3300027498.a:Ga0209185_1014390); c00005_3300027.. (original name was: 3300027498.a:Ga0209185_1000140); c00006_3300027.. (original name was: 3300027498.a:Ga0209185_1007324); c00007_3300027.. (original name was: 3300027498.a:Ga0209185_1001484); c00008_3300027.. (original name was: 3300027498.a:Ga0209185_1000089); c00009_3300027.. (original name was: 3300027498.a:Ga0209185_1000078); c00010_3300027.. (original name was: 3300027498.a:Ga0209185_1000333); c00011_3300027.. (original name was: 3300027498.a:Ga0209185_1000051); c00012_3300027.. (original name was: 3300027498.a:Ga0209185_1001408); c00013_3300027.. (original name was: 3300027498.a:Ga0209185_1002469); c00014_3300027.. (original name was: 3300027498.a:Ga0209185_1000432); c00015_3300027.. (original name was: 3300027498.a:Ga0209185_1000141); c00016_3300027.. (original name was: 3300027498.a:Ga0209185_1001261); c00017_3300027.. (original name was: 3300027498.a:Ga0209185_1000311); c00018_3300027.. (original name was: 3300027498.a:Ga0209185_1000117); c00019_3300027.. (original name was: 3300027498.a:Ga0209185_1005428); c00020_3300027.. (original name was: 3300027498.a:Ga0209185_1000763); c00021_3300027.. (original name was: 3300027498.a:Ga0209185_1001251); c00022_3300027.. (original name was: 3300027498.a:Ga0209185_1000281); c00023_3300027.. (original name was: 3300027498.a:Ga0209185_1000073); c00024_3300027.. (original name was: 3300027498.a:Ga0209185_1000355); c00025_3300027.. (original name was: 3300027498.a:Ga0209185_1000872); c00026_3300027.. (original name was: 3300027498.a:Ga0209185_1000040); c00028_3300027.. (original name was: 3300027498.a:Ga0209185_1001592); c00029_3300027.. (original name was: 3300027498.a:Ga0209185_1000128); c00030_3300027.. (original name was: 3300027498.a:Ga0209185_1000059); c00031_3300027.. (original name was: 3300027498.a:Ga0209185_1003208); c00032_3300027.. (original name was: 3300027498.a:Ga0209185_1000213); c00033_3300027.. (original name was: 3300027498.a:Ga0209185_1000795); c00034_3300027.. (original name was: 3300027498.a:Ga0209185_1000263); c00036_3300027.. (original name was: 3300027498.a:Ga0209185_1000036); c00037_3300027.. (original name was: 3300027498.a:Ga0209185_1000177); c00038_3300027.. (original name was: 3300027498.a:Ga0209185_1000082); c00039_3300027.. (original name was: 3300027498.a:Ga0209185_1000270); c00040_3300027.. (original name was: 3300027498.a:Ga0209185_1000927); c00041_3300027.. (original name was: 3300027498.a:Ga0209185_1006068); c00042_3300027.. (original name was: 3300027498.a:Ga0209185_1000027); c00043_3300027.. (original name was: 3300027498.a:Ga0209185_1000124); c00044_3300027.. (original name was: 3300027498.a:Ga0209185_1002646); c00045_3300027.. (original name was: 3300027498.a:Ga0209185_1000588); c00046_3300027.. (original name was: 3300027498.a:Ga0209185_1000394); c00047_3300027.. (original name was: 3300027498.a:Ga0209185_1004662); c00048_3300027.. (original name was: 3300027498.a:Ga0209185_1000160); c00049_3300027.. (original name was: 3300027498.a:Ga0209185_1000063); c00050_3300027.. (original name was: 3300027498.a:Ga0209185_1000092); c00051_3300027.. (original name was: 3300027498.a:Ga0209185_1001450); c00052_3300027.. (original name was: 3300027498.a:Ga0209185_1001749); c00053_3300027.. (original name was: 3300027498.a:Ga0209185_1000114); c00054_3300027.. (original name was: 3300027498.a:Ga0209185_1000308); c00056_3300027.. (original name was: 3300027498.a:Ga0209185_1000596); c00057_3300027.. (original name was: 3300027498.a:Ga0209185_1000867); c00058_3300027.. (original name was: 3300027498.a:Ga0209185_1000162); c00059_3300027.. (original name was: 3300027498.a:Ga0209185_1004256)

Compact view

c00001_3300027.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 66,728 nt. (total: 66,728 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 66728:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (phe - gly) + (asn) + (gly) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_11

Search NORINE for peptide: strict or relaxed

AMP-binding (442..839): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg1_13

Search NORINE for peptide: strict or relaxed

AMP-binding (498..888): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg1_14

Search NORINE for peptide: strict or relaxed

AMP-binding (432..837): asn

NRPSPredictor2: asn

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg1_15

Search NORINE for peptide: strict or relaxed

AMP-binding (495..922): phe

NRPSPredictor2: phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: DAWTIAAICK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 100% (strong)

AMP-binding (1573..1961): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg1_16

Search NORINE for peptide: strict or relaxed

AMP-binding (1382..1779): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

ctg1_18

CAL_domain (58..485): pk

minowa: NH2

Prediction, score:

NH2: 160.7
AHBA: 32.2
shikimic_acid: 15.0
fatty_acid: 13.6
Acetyl-CoA: 0.7

PKS_AT (1219..1513): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 100.0%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 198.3
inactive: 158.7
Methoxymalonyl-CoA: 57.7
Methylmalonyl-CoA: 57.5
Propionyl-CoA: 36.4
Benzoyl-CoA: 24.8
Isobutyryl-CoA: 23.7
Ethylmalonyl-CoA: 17.8
trans-1,2-CPDA: 16.1
2-Methylbutyryl-CoA: 15.1
Acetyl-CoA: 12.5
fatty_acid: 9.3
CHC-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

c00004_3300027.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 2,396 - 57,323 nt. (total: 54,928 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 2395 - 57323:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - mal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_19

Search NORINE for peptide: strict or relaxed

AMP-binding (491..883): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DIsQitLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

ctg4_21

Search NORINE for peptide: strict or relaxed

AMP-binding (241..647): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

PKS_AT (1376..1671): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 158.3
inactive: 113.6
Methoxymalonyl-CoA: 70.9
Methylmalonyl-CoA: 64.4
Propionyl-CoA: 49.9
Ethylmalonyl-CoA: 36.1
2-Methylbutyryl-CoA: 30.6
Isobutyryl-CoA: 27.6
CHC-CoA: 26.0
fatty_acid: 23.6
Benzoyl-CoA: 20.2
3-Methylbutyryl-CoA: 16.8
Acetyl-CoA: 13.0
trans-1,2-CPDA: 11.3

c00004_3300027.. - Region 2 - terpene

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Location: 59,433 - 81,352 nt. (total: 21,920 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00027_3300027.. - Region 1 - NRPS

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Location: 1 - 29,211 nt. (total: 29,211 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 29211:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_2

Search NORINE for peptide: strict or relaxed

AMP-binding (488..893): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmlqIAGayK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

ctg27_3

Search NORINE for peptide: strict or relaxed

AMP-binding (546..933): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAFyVsAglK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 60% (weak)

c00035_3300027.. - Region 1 - T1PKS

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Location: 1 - 33,974 nt. (total: 33,974 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00055_3300027.. - Region 1 - terpene

Download region GenBank file

Location: 1,577 - 22,656 nt. (total: 21,080 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00060_3300027.. - Region 1 - terpene

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Location: 1,123 - 22,064 nt. (total: 20,942 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it