3300027786_11 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00007_3300027.. (original name was: 3300027786.a:Ga0209812_10000058)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	bacteriocin	24,301	35,152

c00008_3300027.. (original name was: 3300027786.a:Ga0209812_10000780)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS	3,553	25,962

c00012_3300027.. (original name was: 3300027786.a:Ga0209812_10000030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	arylpolyene	94,794	116,073

c00022_3300027.. (original name was: 3300027786.a:Ga0209812_10000101)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	NRPS	1	43,592

c00029_3300027.. (original name was: 3300027786.a:Ga0209812_10000462)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	lanthipeptide	1	18,585

c00055_3300027.. (original name was: 3300027786.a:Ga0209812_10000515)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	NRPS	359	34,794

c00078_3300027.. (original name was: 3300027786.a:Ga0209812_10000248)

Region	Type	From	To	Most similar known cluster		Similarity
Region 78.1	transAT-PKS-like	1	35,569

c00079_3300027.. (original name was: 3300027786.a:Ga0209812_10009457)

Region	Type	From	To	Most similar known cluster		Similarity
Region 79.1	NRPS	1	4,849

c00111_3300027.. (original name was: 3300027786.a:Ga0209812_10000038)

Region	Type	From	To	Most similar known cluster		Similarity
Region 111.1	NRPS	1	30,095

Region	Type	From	To	Similarity
Region 7.1	bacteriocin	24,301	35,152
Region 8.1	NRPS	3,553	25,962
Region 12.1	arylpolyene	94,794	116,073
Region 22.1	NRPS	1	43,592
Region 29.1	lanthipeptide	1	18,585
Region 55.1	NRPS	359	34,794
Region 78.1	transAT-PKS-like	1	35,569
Region 79.1	NRPS	1	4,849
Region 111.1	NRPS	1	30,095

No secondary metabolite regions were found in these records:: c00001_3300027.. (original name was: 3300027786.a:Ga0209812_10004096); c00002_3300027.. (original name was: 3300027786.a:Ga0209812_10002544); c00003_3300027.. (original name was: 3300027786.a:Ga0209812_10001991); c00004_3300027.. (original name was: 3300027786.a:Ga0209812_10001207); c00005_3300027.. (original name was: 3300027786.a:Ga0209812_10000452); c00006_3300027.. (original name was: 3300027786.a:Ga0209812_10000843); c00009_3300027.. (original name was: 3300027786.a:Ga0209812_10001175); c00010_3300027.. (original name was: 3300027786.a:Ga0209812_10010628); c00011_3300027.. (original name was: 3300027786.a:Ga0209812_10002071); c00013_3300027.. (original name was: 3300027786.a:Ga0209812_10000051); c00014_3300027.. (original name was: 3300027786.a:Ga0209812_10000008); c00015_3300027.. (original name was: 3300027786.a:Ga0209812_10000510); c00016_3300027.. (original name was: 3300027786.a:Ga0209812_10000995); c00017_3300027.. (original name was: 3300027786.a:Ga0209812_10001620); c00018_3300027.. (original name was: 3300027786.a:Ga0209812_10002008); c00019_3300027.. (original name was: 3300027786.a:Ga0209812_10000424); c00020_3300027.. (original name was: 3300027786.a:Ga0209812_10001438); c00021_3300027.. (original name was: 3300027786.a:Ga0209812_10007161); c00023_3300027.. (original name was: 3300027786.a:Ga0209812_10000396); c00024_3300027.. (original name was: 3300027786.a:Ga0209812_10000559); c00025_3300027.. (original name was: 3300027786.a:Ga0209812_10000161); c00026_3300027.. (original name was: 3300027786.a:Ga0209812_10001927); c00027_3300027.. (original name was: 3300027786.a:Ga0209812_10001131); c00028_3300027.. (original name was: 3300027786.a:Ga0209812_10008988); c00030_3300027.. (original name was: 3300027786.a:Ga0209812_10000064); c00031_3300027.. (original name was: 3300027786.a:Ga0209812_10000785); c00032_3300027.. (original name was: 3300027786.a:Ga0209812_10003016); c00033_3300027.. (original name was: 3300027786.a:Ga0209812_10006217); c00034_3300027.. (original name was: 3300027786.a:Ga0209812_10002123); c00035_3300027.. (original name was: 3300027786.a:Ga0209812_10000525); c00036_3300027.. (original name was: 3300027786.a:Ga0209812_10001774); c00037_3300027.. (original name was: 3300027786.a:Ga0209812_10000998); c00038_3300027.. (original name was: 3300027786.a:Ga0209812_10001957); c00039_3300027.. (original name was: 3300027786.a:Ga0209812_10003748); c00040_3300027.. (original name was: 3300027786.a:Ga0209812_10000159); c00041_3300027.. (original name was: 3300027786.a:Ga0209812_10001333); c00042_3300027.. (original name was: 3300027786.a:Ga0209812_10005989); c00043_3300027.. (original name was: 3300027786.a:Ga0209812_10004339); c00044_3300027.. (original name was: 3300027786.a:Ga0209812_10002011); c00045_3300027.. (original name was: 3300027786.a:Ga0209812_10000985); c00046_3300027.. (original name was: 3300027786.a:Ga0209812_10000786); c00047_3300027.. (original name was: 3300027786.a:Ga0209812_10000009); c00048_3300027.. (original name was: 3300027786.a:Ga0209812_10008168); c00049_3300027.. (original name was: 3300027786.a:Ga0209812_10004267); c00050_3300027.. (original name was: 3300027786.a:Ga0209812_10000096); c00051_3300027.. (original name was: 3300027786.a:Ga0209812_10001196); c00052_3300027.. (original name was: 3300027786.a:Ga0209812_10001992); c00053_3300027.. (original name was: 3300027786.a:Ga0209812_10011062); c00054_3300027.. (original name was: 3300027786.a:Ga0209812_10000117); c00056_3300027.. (original name was: 3300027786.a:Ga0209812_10000607); c00057_3300027.. (original name was: 3300027786.a:Ga0209812_10000806); c00058_3300027.. (original name was: 3300027786.a:Ga0209812_10002092); c00059_3300027.. (original name was: 3300027786.a:Ga0209812_10001097); c00060_3300027.. (original name was: 3300027786.a:Ga0209812_10002067); c00061_3300027.. (original name was: 3300027786.a:Ga0209812_10000276); c00062_3300027.. (original name was: 3300027786.a:Ga0209812_10018415); c00063_3300027.. (original name was: 3300027786.a:Ga0209812_10000937); c00064_3300027.. (original name was: 3300027786.a:Ga0209812_10009295); c00065_3300027.. (original name was: 3300027786.a:Ga0209812_10001733); c00066_3300027.. (original name was: 3300027786.a:Ga0209812_10002871); c00067_3300027.. (original name was: 3300027786.a:Ga0209812_10001790); c00068_3300027.. (original name was: 3300027786.a:Ga0209812_10001273); c00069_3300027.. (original name was: 3300027786.a:Ga0209812_10002423); c00070_3300027.. (original name was: 3300027786.a:Ga0209812_10000943); c00071_3300027.. (original name was: 3300027786.a:Ga0209812_10000264); c00072_3300027.. (original name was: 3300027786.a:Ga0209812_10001167); c00073_3300027.. (original name was: 3300027786.a:Ga0209812_10001133); c00074_3300027.. (original name was: 3300027786.a:Ga0209812_10001113); c00075_3300027.. (original name was: 3300027786.a:Ga0209812_10001878); c00076_3300027.. (original name was: 3300027786.a:Ga0209812_10004322); c00077_3300027.. (original name was: 3300027786.a:Ga0209812_10002437); c00080_3300027.. (original name was: 3300027786.a:Ga0209812_10021806); c00081_3300027.. (original name was: 3300027786.a:Ga0209812_10000175); c00082_3300027.. (original name was: 3300027786.a:Ga0209812_10000177); c00083_3300027.. (original name was: 3300027786.a:Ga0209812_10000376); c00084_3300027.. (original name was: 3300027786.a:Ga0209812_10000575); c00085_3300027.. (original name was: 3300027786.a:Ga0209812_10000090); c00086_3300027.. (original name was: 3300027786.a:Ga0209812_10000293); c00087_3300027.. (original name was: 3300027786.a:Ga0209812_10000739); c00088_3300027.. (original name was: 3300027786.a:Ga0209812_10000023); c00089_3300027.. (original name was: 3300027786.a:Ga0209812_10000279); c00090_3300027.. (original name was: 3300027786.a:Ga0209812_10001672); c00091_3300027.. (original name was: 3300027786.a:Ga0209812_10000305); c00092_3300027.. (original name was: 3300027786.a:Ga0209812_10007871); c00093_3300027.. (original name was: 3300027786.a:Ga0209812_10000057); c00094_3300027.. (original name was: 3300027786.a:Ga0209812_10000154); c00095_3300027.. (original name was: 3300027786.a:Ga0209812_10014681); c00096_3300027.. (original name was: 3300027786.a:Ga0209812_10013226); c00097_3300027.. (original name was: 3300027786.a:Ga0209812_10000695); c00098_3300027.. (original name was: 3300027786.a:Ga0209812_10000538); c00099_3300027.. (original name was: 3300027786.a:Ga0209812_10000024); c00100_3300027.. (original name was: 3300027786.a:Ga0209812_10000203); c00101_3300027.. (original name was: 3300027786.a:Ga0209812_10000800); c00102_3300027.. (original name was: 3300027786.a:Ga0209812_10000259); c00103_3300027.. (original name was: 3300027786.a:Ga0209812_10001425); c00104_3300027.. (original name was: 3300027786.a:Ga0209812_10000231); c00105_3300027.. (original name was: 3300027786.a:Ga0209812_10000275); c00106_3300027.. (original name was: 3300027786.a:Ga0209812_10000069); c00107_3300027.. (original name was: 3300027786.a:Ga0209812_10000383); c00108_3300027.. (original name was: 3300027786.a:Ga0209812_10000176); c00109_3300027.. (original name was: 3300027786.a:Ga0209812_10000659); c00110_3300027.. (original name was: 3300027786.a:Ga0209812_10000329); c00112_3300027.. (original name was: 3300027786.a:Ga0209812_10000435); c00113_3300027.. (original name was: 3300027786.a:Ga0209812_10002960); c00114_3300027.. (original name was: 3300027786.a:Ga0209812_10001169); c00115_3300027.. (original name was: 3300027786.a:Ga0209812_10000213); c00116_3300027.. (original name was: 3300027786.a:Ga0209812_10000524)

Compact view

c00007_3300027.. - Region 1 - bacteriocin

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Location: 24,301 - 35,152 nt. (total: 10,852 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00008_3300027.. - Region 1 - NRPS

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Location: 3,553 - 25,962 nt. (total: 22,410 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 3552 - 25962:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg8_22

Search NORINE for peptide: strict or relaxed

AMP-binding (216..620): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DalFtGVAiK
Nearest Stachelhaus code:: pip
Stachelhaus code match:: 60% (weak)

c00012_3300027.. - Region 1 - arylpolyene

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Location: 94,794 - 116,073 nt. (total: 21,280 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

TTA codons

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Gene details

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c00022_3300027.. - Region 1 - NRPS

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Location: 1 - 43,592 nt. (total: 43,592 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 43592:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - val - phe - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg22_5

PKS_AT (5..281): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 114.1
Methoxymalonyl-CoA: 36.6
Methylmalonyl-CoA: 28.3
inactive: 24.7
Propionyl-CoA: 19.7
2-Methylbutyryl-CoA: 13.2
Ethylmalonyl-CoA: 8.5
Isobutyryl-CoA: 8.1
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 62.5%

PKS_AT (312..590): mxmal

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 31.1
inactive: 25.0
Malonyl-CoA: 24.5
Methylmalonyl-CoA: 22.2
Propionyl-CoA: 12.3
Ethylmalonyl-CoA: 10.9
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%

ctg22_6

Search NORINE for peptide: strict or relaxed

AMP-binding (301..702): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAwFLGaTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 80% (moderate)

AMP-binding (1370..1771): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAwWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2452..2851): phe

NRPSPredictor2: phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: phe, trp
Single AA prediction:: phe

Stachelhaus prediction details:

Stachelhaus sequence:: DAWTVAAVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 100% (strong)

AMP-binding (3535..3927): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAgALaGilK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (4586..5003): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmDIGeitK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)

c00029_3300027.. - Region 1 - lanthipeptide

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Location: 1 - 18,585 nt. (total: 18,585 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptide(s) for ctg29_5 - Putative Class III

ctg29_6 leader / core peptide: MNRILDLQKLDNTMGDSLE - ALAADhaDhbDhaDhaFAGCNCDhaDhbFDhaQDhbDhaCDhbPPKDIIDhaI
ctg29_7 leader / core peptide: MNRILDLQKLDSTTDNSLEAAAA - DhaDhbDhaDhaVLFCNCDhaDhbFDhaNDhaGCDhaPPKDIIDhaI

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg29_6 - Class III

Cleavage pHMM score: 5.60

RODEO score: 0

Monoisotopic mass: 2909.4 Da

Molecular weight: 2911.2 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2929.3 Da N = 1; 2947.3 Da N = 2; 2965.3 Da N = 3; 2983.3 Da N = 4; 3001.3 Da N = 5; 3019.4 Da N = 6; 3037.4 Da N = 7; 3055.4 Da N = 8

ctg29_7 - Class III

Cleavage pHMM score: 3.80

RODEO score: 0

Monoisotopic mass: 2613.3 Da

Molecular weight: 2614.9 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2632.9 Da N = 1; 2651.0 Da N = 2; 2669.0 Da N = 3; 2687.0 Da N = 4; 2705.0 Da N = 5; 2723.0 Da N = 6; 2741.1 Da N = 7

c00055_3300027.. - Region 1 - NRPS

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Location: 359 - 34,794 nt. (total: 34,436 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 358 - 34794:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (gly) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg55_24

Search NORINE for peptide: strict or relaxed

AMP-binding (490..888): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DIsQitLVyK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 60% (weak)

ctg55_25

Search NORINE for peptide: strict or relaxed

AMP-binding (511..917): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQfGLVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg55_26

Search NORINE for peptide: strict or relaxed

AMP-binding (523..941): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAgDmGhVcK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

c00078_3300027.. - Region 1 - transAT-PKS-like

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Location: 1 - 35,569 nt. (total: 35,569 nt) Show pHMM detection rules used

Region on contig edge.

transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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Gene details

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 35569:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal - mal - ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

c00079_3300027.. - Region 1 - NRPS

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Location: 1 - 4,849 nt. (total: 4,849 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 4849:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg79_2

Search NORINE for peptide: strict or relaxed

AMP-binding (500..916): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfLIGAVvK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

c00111_3300027.. - Region 1 - NRPS

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Location: 1 - 30,095 nt. (total: 30,095 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 30095:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - arg) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg111_1

Search NORINE for peptide: strict or relaxed

AMP-binding (18..419): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAFTiAAVwK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 80% (moderate)

AMP-binding (1092..1494): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfiIGAVwK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 70% (weak)

ctg111_2

Search NORINE for peptide: strict or relaxed

AMP-binding (12..427): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvvdvAAVYK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

AMP-binding (1129..1563): arg

NRPSPredictor2: arg

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: arg
Single AA prediction:: arg

Stachelhaus prediction details:

Stachelhaus sequence:: DVADVGAvDK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 90% (moderate)