3300027869_8 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00001_3300027.. (original name was: 3300027869.a:Ga0209579_10000031)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	terpene	11,551	43,814
Region 1.2	bacteriocin	256,504	267,322

c00004_3300027.. (original name was: 3300027869.a:Ga0209579_10000017)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS-like	21,857	63,050
Region 4.2	NRPS-like	300,880	344,167

c00009_3300027.. (original name was: 3300027869.a:Ga0209579_10000027)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	other	89,946	130,926
Region 9.2	T3PKS	217,393	258,442

c00010_3300027.. (original name was: 3300027869.a:Ga0209579_10000028)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS-like	207,361	249,940

c00014_3300027.. (original name was: 3300027869.a:Ga0209579_10000014)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	199,246	246,477

Region	Type	From	To	Similarity
Region 1.1	terpene	11,551	43,814
Region 1.2	bacteriocin	256,504	267,322
Region 4.1	NRPS-like	21,857	63,050
Region 4.2	NRPS-like	300,880	344,167
Region 9.1	other	89,946	130,926
Region 9.2	T3PKS	217,393	258,442
Region 10.1	NRPS-like	207,361	249,940
Region 14.1	NRPS	199,246	246,477

No secondary metabolite regions were found in these records:: c00002_3300027.. (original name was: 3300027869.a:Ga0209579_10000085); c00003_3300027.. (original name was: 3300027869.a:Ga0209579_10000150); c00005_3300027.. (original name was: 3300027869.a:Ga0209579_10000049); c00006_3300027.. (original name was: 3300027869.a:Ga0209579_10000003); c00007_3300027.. (original name was: 3300027869.a:Ga0209579_10000135); c00008_3300027.. (original name was: 3300027869.a:Ga0209579_10000007); c00011_3300027.. (original name was: 3300027869.a:Ga0209579_10000114); c00012_3300027.. (original name was: 3300027869.a:Ga0209579_10000034); c00013_3300027.. (original name was: 3300027869.a:Ga0209579_10000129); c00015_3300027.. (original name was: 3300027869.a:Ga0209579_10000337); c00016_3300027.. (original name was: 3300027869.a:Ga0209579_10000107); c00017_3300027.. (original name was: 3300027869.a:Ga0209579_10000036); c00018_3300027.. (original name was: 3300027869.a:Ga0209579_10000013)

Compact view

c00001_3300027.. - Region 1 - terpene

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Location: 11,551 - 43,814 nt. (total: 32,264 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00001_3300027.. - Region 2 - bacteriocin

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Location: 256,504 - 267,322 nt. (total: 10,819 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00004_3300027.. - Region 1 - NRPS-like

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Location: 21,857 - 63,050 nt. (total: 41,194 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 21856 - 63050:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_33

Search NORINE for peptide: strict or relaxed

AMP-binding (10..452): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vlAaaGAaaK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 40% (weak)

c00004_3300027.. - Region 2 - NRPS-like

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Location: 300,880 - 344,167 nt. (total: 43,288 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00009_3300027.. - Region 1 - other

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Location: 89,946 - 130,926 nt. (total: 40,981 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00009_3300027.. - Region 2 - T3PKS

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Location: 217,393 - 258,442 nt. (total: 41,050 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance

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Gene details

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c00010_3300027.. - Region 1 - NRPS-like

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Location: 207,361 - 249,940 nt. (total: 42,580 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 207360 - 249940:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg10_182

Search NORINE for peptide: strict or relaxed

AMP-binding (19..433): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vfLvIGGslK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 50% (weak)

c00014_3300027.. - Region 1 - NRPS

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Location: 199,246 - 246,477 nt. (total: 47,232 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 199245 - 246477:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_181

Search NORINE for peptide: strict or relaxed

AMP-binding (20..414): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

ctg14_182

Search NORINE for peptide: strict or relaxed

AMP-binding (943..1346): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DieDIGtViK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)