3300028569_28 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00024_3300028.. (original name was: 3300028569.a:Ga0247843_1004707)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	bacteriocin	2,677	13,516

c00052_3300028.. (original name was: 3300028569.a:Ga0247843_1001087)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	bacteriocin	27,415	37,633

c00053_3300028.. (original name was: 3300028569.a:Ga0247843_1002714)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	NRPS	1	31,136

c00057_3300028.. (original name was: 3300028569.a:Ga0247843_1000032)

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	terpene	1	17,420

c00068_3300028.. (original name was: 3300028569.a:Ga0247843_1000569)

Region	Type	From	To	Most similar known cluster		Similarity
Region 68.1	T1PKS,hserlactone	1	46,540

c00072_3300028.. (original name was: 3300028569.a:Ga0247843_1000350)

Region	Type	From	To	Most similar known cluster		Similarity
Region 72.1	bacteriocin	36,441	47,325

c00076_3300028.. (original name was: 3300028569.a:Ga0247843_1002089)

Region	Type	From	To	Most similar known cluster		Similarity
Region 76.1	bacteriocin	4,830	15,708

Region	Type	From	To	Similarity
Region 24.1	bacteriocin	2,677	13,516
Region 52.1	bacteriocin	27,415	37,633
Region 53.1	NRPS	1	31,136
Region 57.1	terpene	1	17,420
Region 68.1	T1PKS,hserlactone	1	46,540
Region 72.1	bacteriocin	36,441	47,325
Region 76.1	bacteriocin	4,830	15,708

No secondary metabolite regions were found in these records:: c00001_3300028.. (original name was: 3300028569.a:Ga0247843_1022037); c00002_3300028.. (original name was: 3300028569.a:Ga0247843_1005557); c00003_3300028.. (original name was: 3300028569.a:Ga0247843_1003924); c00004_3300028.. (original name was: 3300028569.a:Ga0247843_1002379); c00005_3300028.. (original name was: 3300028569.a:Ga0247843_1001910); c00006_3300028.. (original name was: 3300028569.a:Ga0247843_1002827); c00007_3300028.. (original name was: 3300028569.a:Ga0247843_1028888); c00008_3300028.. (original name was: 3300028569.a:Ga0247843_1008188); c00009_3300028.. (original name was: 3300028569.a:Ga0247843_1002382); c00010_3300028.. (original name was: 3300028569.a:Ga0247843_1002368); c00011_3300028.. (original name was: 3300028569.a:Ga0247843_1005619); c00012_3300028.. (original name was: 3300028569.a:Ga0247843_1001098); c00013_3300028.. (original name was: 3300028569.a:Ga0247843_1000735); c00014_3300028.. (original name was: 3300028569.a:Ga0247843_1000108); c00015_3300028.. (original name was: 3300028569.a:Ga0247843_1002381); c00016_3300028.. (original name was: 3300028569.a:Ga0247843_1021207); c00017_3300028.. (original name was: 3300028569.a:Ga0247843_1000354); c00018_3300028.. (original name was: 3300028569.a:Ga0247843_1009850); c00019_3300028.. (original name was: 3300028569.a:Ga0247843_1007140); c00020_3300028.. (original name was: 3300028569.a:Ga0247843_1000769); c00021_3300028.. (original name was: 3300028569.a:Ga0247843_1000620); c00022_3300028.. (original name was: 3300028569.a:Ga0247843_1001077); c00023_3300028.. (original name was: 3300028569.a:Ga0247843_1002810); c00025_3300028.. (original name was: 3300028569.a:Ga0247843_1002481); c00026_3300028.. (original name was: 3300028569.a:Ga0247843_1003003); c00027_3300028.. (original name was: 3300028569.a:Ga0247843_1001595); c00028_3300028.. (original name was: 3300028569.a:Ga0247843_1004246); c00029_3300028.. (original name was: 3300028569.a:Ga0247843_1002954); c00030_3300028.. (original name was: 3300028569.a:Ga0247843_1002896); c00031_3300028.. (original name was: 3300028569.a:Ga0247843_1001038); c00032_3300028.. (original name was: 3300028569.a:Ga0247843_1000336); c00033_3300028.. (original name was: 3300028569.a:Ga0247843_1007832); c00034_3300028.. (original name was: 3300028569.a:Ga0247843_1000248); c00035_3300028.. (original name was: 3300028569.a:Ga0247843_1005756); c00036_3300028.. (original name was: 3300028569.a:Ga0247843_1023487); c00037_3300028.. (original name was: 3300028569.a:Ga0247843_1000547); c00038_3300028.. (original name was: 3300028569.a:Ga0247843_1002290); c00039_3300028.. (original name was: 3300028569.a:Ga0247843_1000639); c00040_3300028.. (original name was: 3300028569.a:Ga0247843_1001281); c00041_3300028.. (original name was: 3300028569.a:Ga0247843_1003015); c00042_3300028.. (original name was: 3300028569.a:Ga0247843_1000118); c00043_3300028.. (original name was: 3300028569.a:Ga0247843_1003532); c00044_3300028.. (original name was: 3300028569.a:Ga0247843_1010368); c00045_3300028.. (original name was: 3300028569.a:Ga0247843_1005624); c00046_3300028.. (original name was: 3300028569.a:Ga0247843_1000980); c00047_3300028.. (original name was: 3300028569.a:Ga0247843_1001425); c00048_3300028.. (original name was: 3300028569.a:Ga0247843_1001171); c00049_3300028.. (original name was: 3300028569.a:Ga0247843_1002465); c00050_3300028.. (original name was: 3300028569.a:Ga0247843_1003615); c00051_3300028.. (original name was: 3300028569.a:Ga0247843_1002385); c00054_3300028.. (original name was: 3300028569.a:Ga0247843_1005143); c00055_3300028.. (original name was: 3300028569.a:Ga0247843_1001778); c00056_3300028.. (original name was: 3300028569.a:Ga0247843_1004628); c00058_3300028.. (original name was: 3300028569.a:Ga0247843_1004882); c00059_3300028.. (original name was: 3300028569.a:Ga0247843_1000654); c00060_3300028.. (original name was: 3300028569.a:Ga0247843_1017772); c00061_3300028.. (original name was: 3300028569.a:Ga0247843_1012499); c00062_3300028.. (original name was: 3300028569.a:Ga0247843_1002857); c00063_3300028.. (original name was: 3300028569.a:Ga0247843_1020895); c00064_3300028.. (original name was: 3300028569.a:Ga0247843_1004110); c00065_3300028.. (original name was: 3300028569.a:Ga0247843_1000637); c00066_3300028.. (original name was: 3300028569.a:Ga0247843_1000473); c00067_3300028.. (original name was: 3300028569.a:Ga0247843_1028003); c00069_3300028.. (original name was: 3300028569.a:Ga0247843_1005011); c00070_3300028.. (original name was: 3300028569.a:Ga0247843_1000723); c00071_3300028.. (original name was: 3300028569.a:Ga0247843_1001137); c00073_3300028.. (original name was: 3300028569.a:Ga0247843_1001579); c00074_3300028.. (original name was: 3300028569.a:Ga0247843_1001347); c00075_3300028.. (original name was: 3300028569.a:Ga0247843_1002622); c00077_3300028.. (original name was: 3300028569.a:Ga0247843_1001686); c00078_3300028.. (original name was: 3300028569.a:Ga0247843_1006874); c00079_3300028.. (original name was: 3300028569.a:Ga0247843_1001085); c00080_3300028.. (original name was: 3300028569.a:Ga0247843_1004530); c00081_3300028.. (original name was: 3300028569.a:Ga0247843_1006550); c00082_3300028.. (original name was: 3300028569.a:Ga0247843_1026813)

Compact view

c00024_3300028.. - Region 1 - bacteriocin

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Location: 2,677 - 13,516 nt. (total: 10,840 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00052_3300028.. - Region 1 - bacteriocin

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Location: 27,415 - 37,633 nt. (total: 10,219 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00053_3300028.. - Region 1 - NRPS

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Location: 1 - 31,136 nt. (total: 31,136 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31136:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg53_10

Search NORINE for peptide: strict or relaxed

AMP-binding (512..912): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiEnIGtViK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 60% (weak)

ctg53_11

Search NORINE for peptide: strict or relaxed

AMP-binding (1098..1493): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMENsGavNK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

ctg53_15

Search NORINE for peptide: strict or relaxed

AMP-binding (16..423): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hmWeLGinmK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 40% (weak)

c00057_3300028.. - Region 1 - terpene

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Location: 1 - 17,420 nt. (total: 17,420 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00068_3300028.. - Region 1 - T1PKS,hserlactone

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Location: 1 - 46,540 nt. (total: 46,540 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 46540:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg68_23

PKS_AT (534..829): pk

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 118.5
Methoxymalonyl-CoA: 97.2
Malonyl-CoA: 87.9
Ethylmalonyl-CoA: 85.2
Isobutyryl-CoA: 71.7
Propionyl-CoA: 58.3
trans-1,2-CPDA: 47.8
2-Methylbutyryl-CoA: 46.6
fatty_acid: 39.7
CHC-CoA: 27.1
Benzoyl-CoA: 26.8
Acetyl-CoA: 26.4
inactive: 26.1
3-Methylbutyryl-CoA: 20.6

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; CE-Malonyl-CoA: 66.7%; Methylmalonyl-CoA: 66.7%

c00072_3300028.. - Region 1 - bacteriocin

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Location: 36,441 - 47,325 nt. (total: 10,885 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00076_3300028.. - Region 1 - bacteriocin

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Location: 4,830 - 15,708 nt. (total: 10,879 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it