3300028571_24 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00003_3300028.. (original name was: 3300028571.a:Ga0247844_1000924)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	1	46,151

c00004_3300028.. (original name was: 3300028571.a:Ga0247844_1004146)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	bacteriocin	6,510	17,349

c00022_3300028.. (original name was: 3300028571.a:Ga0247844_1001774)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	bacteriocin	22,071	32,949

c00025_3300028.. (original name was: 3300028571.a:Ga0247844_1000285)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	bacteriocin	36,441	47,325

c00028_3300028.. (original name was: 3300028571.a:Ga0247844_1000910)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	bacteriocin	27,415	37,633

c00050_3300028.. (original name was: 3300028571.a:Ga0247844_1000021)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	terpene	262,215	279,634

c00061_3300028.. (original name was: 3300028571.a:Ga0247844_1000464)

Region	Type	From	To	Most similar known cluster		Similarity
Region 61.1	T1PKS,hserlactone	1	46,540

Region	Type	From	To	Similarity
Region 3.1	NRPS	1	46,151
Region 4.1	bacteriocin	6,510	17,349
Region 22.1	bacteriocin	22,071	32,949
Region 25.1	bacteriocin	36,441	47,325
Region 28.1	bacteriocin	27,415	37,633
Region 50.1	terpene	262,215	279,634
Region 61.1	T1PKS,hserlactone	1	46,540

No secondary metabolite regions were found in these records:: c00001_3300028.. (original name was: 3300028571.a:Ga0247844_1009717); c00002_3300028.. (original name was: 3300028571.a:Ga0247844_1007494); c00005_3300028.. (original name was: 3300028571.a:Ga0247844_1002013); c00006_3300028.. (original name was: 3300028571.a:Ga0247844_1001117); c00007_3300028.. (original name was: 3300028571.a:Ga0247844_1000613); c00008_3300028.. (original name was: 3300028571.a:Ga0247844_1033928); c00009_3300028.. (original name was: 3300028571.a:Ga0247844_1001468); c00010_3300028.. (original name was: 3300028571.a:Ga0247844_1004461); c00011_3300028.. (original name was: 3300028571.a:Ga0247844_1000267); c00012_3300028.. (original name was: 3300028571.a:Ga0247844_1011819); c00013_3300028.. (original name was: 3300028571.a:Ga0247844_1000850); c00014_3300028.. (original name was: 3300028571.a:Ga0247844_1000090); c00015_3300028.. (original name was: 3300028571.a:Ga0247844_1020908); c00016_3300028.. (original name was: 3300028571.a:Ga0247844_1007115); c00017_3300028.. (original name was: 3300028571.a:Ga0247844_1017085); c00018_3300028.. (original name was: 3300028571.a:Ga0247844_1000908); c00019_3300028.. (original name was: 3300028571.a:Ga0247844_1000962); c00020_3300028.. (original name was: 3300028571.a:Ga0247844_1029531); c00021_3300028.. (original name was: 3300028571.a:Ga0247844_1005024); c00023_3300028.. (original name was: 3300028571.a:Ga0247844_1002025); c00024_3300028.. (original name was: 3300028571.a:Ga0247844_1005157); c00026_3300028.. (original name was: 3300028571.a:Ga0247844_1001057); c00027_3300028.. (original name was: 3300028571.a:Ga0247844_1002454); c00029_3300028.. (original name was: 3300028571.a:Ga0247844_1000097); c00030_3300028.. (original name was: 3300028571.a:Ga0247844_1003076); c00031_3300028.. (original name was: 3300028571.a:Ga0247844_1001008); c00032_3300028.. (original name was: 3300028571.a:Ga0247844_1002639); c00033_3300028.. (original name was: 3300028571.a:Ga0247844_1000902); c00034_3300028.. (original name was: 3300028571.a:Ga0247844_1030887); c00035_3300028.. (original name was: 3300028571.a:Ga0247844_1020536); c00036_3300028.. (original name was: 3300028571.a:Ga0247844_1028501); c00037_3300028.. (original name was: 3300028571.a:Ga0247844_1004973); c00038_3300028.. (original name was: 3300028571.a:Ga0247844_1005935); c00039_3300028.. (original name was: 3300028571.a:Ga0247844_1003441); c00040_3300028.. (original name was: 3300028571.a:Ga0247844_1000503); c00041_3300028.. (original name was: 3300028571.a:Ga0247844_1000289); c00042_3300028.. (original name was: 3300028571.a:Ga0247844_1006205); c00043_3300028.. (original name was: 3300028571.a:Ga0247844_1007174); c00044_3300028.. (original name was: 3300028571.a:Ga0247844_1001638); c00045_3300028.. (original name was: 3300028571.a:Ga0247844_1000381); c00046_3300028.. (original name was: 3300028571.a:Ga0247844_1002027); c00047_3300028.. (original name was: 3300028571.a:Ga0247844_1002631); c00048_3300028.. (original name was: 3300028571.a:Ga0247844_1004088); c00049_3300028.. (original name was: 3300028571.a:Ga0247844_1000539); c00051_3300028.. (original name was: 3300028571.a:Ga0247844_1000538); c00052_3300028.. (original name was: 3300028571.a:Ga0247844_1002262); c00053_3300028.. (original name was: 3300028571.a:Ga0247844_1000590); c00054_3300028.. (original name was: 3300028571.a:Ga0247844_1001239); c00055_3300028.. (original name was: 3300028571.a:Ga0247844_1002134); c00056_3300028.. (original name was: 3300028571.a:Ga0247844_1001370); c00057_3300028.. (original name was: 3300028571.a:Ga0247844_1006832); c00058_3300028.. (original name was: 3300028571.a:Ga0247844_1000641); c00059_3300028.. (original name was: 3300028571.a:Ga0247844_1027248); c00060_3300028.. (original name was: 3300028571.a:Ga0247844_1008655); c00062_3300028.. (original name was: 3300028571.a:Ga0247844_1003753); c00063_3300028.. (original name was: 3300028571.a:Ga0247844_1004320); c00064_3300028.. (original name was: 3300028571.a:Ga0247844_1000547); c00065_3300028.. (original name was: 3300028571.a:Ga0247844_1002029); c00066_3300028.. (original name was: 3300028571.a:Ga0247844_1000451); c00067_3300028.. (original name was: 3300028571.a:Ga0247844_1002033); c00068_3300028.. (original name was: 3300028571.a:Ga0247844_1001384); c00069_3300028.. (original name was: 3300028571.a:Ga0247844_1000530); c00070_3300028.. (original name was: 3300028571.a:Ga0247844_1002464); c00071_3300028.. (original name was: 3300028571.a:Ga0247844_1004589); c00072_3300028.. (original name was: 3300028571.a:Ga0247844_1003157); c00073_3300028.. (original name was: 3300028571.a:Ga0247844_1003630); c00074_3300028.. (original name was: 3300028571.a:Ga0247844_1003974); c00075_3300028.. (original name was: 3300028571.a:Ga0247844_1001988); c00076_3300028.. (original name was: 3300028571.a:Ga0247844_1000601); c00077_3300028.. (original name was: 3300028571.a:Ga0247844_1000206); c00078_3300028.. (original name was: 3300028571.a:Ga0247844_1002529); c00079_3300028.. (original name was: 3300028571.a:Ga0247844_1001575); c00080_3300028.. (original name was: 3300028571.a:Ga0247844_1000714)

Compact view

c00003_3300028.. - Region 1 - NRPS

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Location: 1 - 46,151 nt. (total: 46,151 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 46151:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_11

Search NORINE for peptide: strict or relaxed

AMP-binding (519..919): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiEnIGtViK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 60% (weak)

ctg3_12

Search NORINE for peptide: strict or relaxed

AMP-binding (1131..1526): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMENsGavNK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

ctg3_16

Search NORINE for peptide: strict or relaxed

AMP-binding (16..423): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hmWeLGinmK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 40% (weak)

c00004_3300028.. - Region 1 - bacteriocin

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Location: 6,510 - 17,349 nt. (total: 10,840 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00022_3300028.. - Region 1 - bacteriocin

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Location: 22,071 - 32,949 nt. (total: 10,879 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00025_3300028.. - Region 1 - bacteriocin

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Location: 36,441 - 47,325 nt. (total: 10,885 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00028_3300028.. - Region 1 - bacteriocin

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Location: 27,415 - 37,633 nt. (total: 10,219 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00050_3300028.. - Region 1 - terpene

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Location: 262,215 - 279,634 nt. (total: 17,420 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00061_3300028.. - Region 1 - T1PKS,hserlactone

Download region GenBank file

Location: 1 - 46,540 nt. (total: 46,540 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 46540:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg61_23

PKS_AT (534..829): pk

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 118.5
Methoxymalonyl-CoA: 97.2
Malonyl-CoA: 87.9
Ethylmalonyl-CoA: 85.2
Isobutyryl-CoA: 71.7
Propionyl-CoA: 58.3
trans-1,2-CPDA: 47.8
2-Methylbutyryl-CoA: 46.6
fatty_acid: 39.7
CHC-CoA: 27.1
Benzoyl-CoA: 26.8
Acetyl-CoA: 26.4
inactive: 26.1
3-Methylbutyryl-CoA: 20.6

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; CE-Malonyl-CoA: 66.7%; Methylmalonyl-CoA: 66.7%