3300028625_1 - 11 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00029_3300028.. (original name was: 3300028625.a:Ga0302251_1000042)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS	111,650	156,050

c00040_3300028.. (original name was: 3300028625.a:Ga0302251_1000662)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	1	28,536

c00049_3300028.. (original name was: 3300028625.a:Ga0302251_1000416)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NRPS	9,524	40,668

c00055_3300028.. (original name was: 3300028625.a:Ga0302251_1000184)

Region	Type	From	To	Most similar known cluster		Similarity
Region 55.1	sactipeptide	30,525	51,847

c00093_3300028.. (original name was: 3300028625.a:Ga0302251_1000098)

Region	Type	From	To	Most similar known cluster		Similarity
Region 93.1	bacteriocin	19,012	31,295

c00112_3300028.. (original name was: 3300028625.a:Ga0302251_1000069)

Region	Type	From	To	Most similar known cluster		Similarity
Region 112.1	thiopeptide,TfuA-related,bacteriocin	23,416	52,321

c00126_3300028.. (original name was: 3300028625.a:Ga0302251_1000090)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	NRPS	18,829	66,664

c00130_3300028.. (original name was: 3300028625.a:Ga0302251_1000158)

Region	Type	From	To	Most similar known cluster		Similarity
Region 130.1	hglE-KS	27,114	69,144

c00151_3300028.. (original name was: 3300028625.a:Ga0302251_1000116)

Region	Type	From	To	Most similar known cluster		Similarity
Region 151.1	hglE-KS,T1PKS,NRPS	2,712	97,093

c00157_3300028.. (original name was: 3300028625.a:Ga0302251_1000213)

Region	Type	From	To	Most similar known cluster		Similarity
Region 157.1	NRPS	22,678	67,269

c00160_3300028.. (original name was: 3300028625.a:Ga0302251_1000257)

Region	Type	From	To	Most similar known cluster		Similarity
Region 160.1	NRPS-like	1	26,942

Region	Type	From	To	Similarity
Region 29.1	NRPS	111,650	156,050
Region 40.1	NRPS	1	28,536
Region 49.1	NRPS	9,524	40,668
Region 55.1	sactipeptide	30,525	51,847
Region 93.1	bacteriocin	19,012	31,295
Region 112.1	thiopeptide,TfuA-related,bacteriocin	23,416	52,321
Region 126.1	NRPS	18,829	66,664
Region 130.1	hglE-KS	27,114	69,144
Region 151.1	hglE-KS,T1PKS,NRPS	2,712	97,093
Region 157.1	NRPS	22,678	67,269
Region 160.1	NRPS-like	1	26,942

No secondary metabolite regions were found in these records:: c00001_3300028.. (original name was: 3300028625.a:Ga0302251_1007272); c00002_3300028.. (original name was: 3300028625.a:Ga0302251_1006419); c00003_3300028.. (original name was: 3300028625.a:Ga0302251_1005883); c00004_3300028.. (original name was: 3300028625.a:Ga0302251_1004699); c00005_3300028.. (original name was: 3300028625.a:Ga0302251_1003393); c00006_3300028.. (original name was: 3300028625.a:Ga0302251_1005850); c00007_3300028.. (original name was: 3300028625.a:Ga0302251_1002668); c00008_3300028.. (original name was: 3300028625.a:Ga0302251_1002187); c00009_3300028.. (original name was: 3300028625.a:Ga0302251_1002040); c00010_3300028.. (original name was: 3300028625.a:Ga0302251_1001575); c00011_3300028.. (original name was: 3300028625.a:Ga0302251_1001436); c00012_3300028.. (original name was: 3300028625.a:Ga0302251_1001094); c00013_3300028.. (original name was: 3300028625.a:Ga0302251_1008028); c00014_3300028.. (original name was: 3300028625.a:Ga0302251_1000864); c00015_3300028.. (original name was: 3300028625.a:Ga0302251_1000750); c00016_3300028.. (original name was: 3300028625.a:Ga0302251_1000626); c00017_3300028.. (original name was: 3300028625.a:Ga0302251_1000468); c00018_3300028.. (original name was: 3300028625.a:Ga0302251_1000361); c00019_3300028.. (original name was: 3300028625.a:Ga0302251_1000318); c00020_3300028.. (original name was: 3300028625.a:Ga0302251_1000259); c00021_3300028.. (original name was: 3300028625.a:Ga0302251_1000226); c00022_3300028.. (original name was: 3300028625.a:Ga0302251_1000200); c00023_3300028.. (original name was: 3300028625.a:Ga0302251_1007357); c00024_3300028.. (original name was: 3300028625.a:Ga0302251_1000192); c00025_3300028.. (original name was: 3300028625.a:Ga0302251_1003368); c00026_3300028.. (original name was: 3300028625.a:Ga0302251_1000185); c00027_3300028.. (original name was: 3300028625.a:Ga0302251_1000101); c00028_3300028.. (original name was: 3300028625.a:Ga0302251_1000057); c00030_3300028.. (original name was: 3300028625.a:Ga0302251_1007275); c00031_3300028.. (original name was: 3300028625.a:Ga0302251_1006227); c00032_3300028.. (original name was: 3300028625.a:Ga0302251_1006018); c00033_3300028.. (original name was: 3300028625.a:Ga0302251_1005585); c00034_3300028.. (original name was: 3300028625.a:Ga0302251_1004988); c00035_3300028.. (original name was: 3300028625.a:Ga0302251_1004768); c00036_3300028.. (original name was: 3300028625.a:Ga0302251_1002326); c00037_3300028.. (original name was: 3300028625.a:Ga0302251_1002216); c00038_3300028.. (original name was: 3300028625.a:Ga0302251_1000109); c00039_3300028.. (original name was: 3300028625.a:Ga0302251_1001307); c00041_3300028.. (original name was: 3300028625.a:Ga0302251_1001068); c00042_3300028.. (original name was: 3300028625.a:Ga0302251_1000974); c00043_3300028.. (original name was: 3300028625.a:Ga0302251_1000580); c00044_3300028.. (original name was: 3300028625.a:Ga0302251_1000149); c00045_3300028.. (original name was: 3300028625.a:Ga0302251_1000551); c00046_3300028.. (original name was: 3300028625.a:Ga0302251_1000430); c00047_3300028.. (original name was: 3300028625.a:Ga0302251_1000017); c00048_3300028.. (original name was: 3300028625.a:Ga0302251_1000423); c00050_3300028.. (original name was: 3300028625.a:Ga0302251_1000648); c00051_3300028.. (original name was: 3300028625.a:Ga0302251_1000254); c00052_3300028.. (original name was: 3300028625.a:Ga0302251_1000991); c00053_3300028.. (original name was: 3300028625.a:Ga0302251_1000195); c00054_3300028.. (original name was: 3300028625.a:Ga0302251_1000188); c00056_3300028.. (original name was: 3300028625.a:Ga0302251_1000173); c00057_3300028.. (original name was: 3300028625.a:Ga0302251_1000159); c00058_3300028.. (original name was: 3300028625.a:Ga0302251_1000148); c00059_3300028.. (original name was: 3300028625.a:Ga0302251_1005121); c00060_3300028.. (original name was: 3300028625.a:Ga0302251_1000707); c00061_3300028.. (original name was: 3300028625.a:Ga0302251_1001909); c00062_3300028.. (original name was: 3300028625.a:Ga0302251_1004300); c00063_3300028.. (original name was: 3300028625.a:Ga0302251_1002272); c00064_3300028.. (original name was: 3300028625.a:Ga0302251_1002191); c00065_3300028.. (original name was: 3300028625.a:Ga0302251_1000256); c00066_3300028.. (original name was: 3300028625.a:Ga0302251_1000053); c00067_3300028.. (original name was: 3300028625.a:Ga0302251_1000456); c00068_3300028.. (original name was: 3300028625.a:Ga0302251_1000855); c00069_3300028.. (original name was: 3300028625.a:Ga0302251_1003485); c00070_3300028.. (original name was: 3300028625.a:Ga0302251_1006281); c00071_3300028.. (original name was: 3300028625.a:Ga0302251_1006673); c00072_3300028.. (original name was: 3300028625.a:Ga0302251_1000298); c00073_3300028.. (original name was: 3300028625.a:Ga0302251_1001895); c00074_3300028.. (original name was: 3300028625.a:Ga0302251_1000733); c00075_3300028.. (original name was: 3300028625.a:Ga0302251_1001004); c00076_3300028.. (original name was: 3300028625.a:Ga0302251_1001426); c00077_3300028.. (original name was: 3300028625.a:Ga0302251_1000784); c00078_3300028.. (original name was: 3300028625.a:Ga0302251_1007149); c00079_3300028.. (original name was: 3300028625.a:Ga0302251_1000759); c00080_3300028.. (original name was: 3300028625.a:Ga0302251_1000755); c00081_3300028.. (original name was: 3300028625.a:Ga0302251_1000366); c00082_3300028.. (original name was: 3300028625.a:Ga0302251_1000562); c00083_3300028.. (original name was: 3300028625.a:Ga0302251_1006137); c00084_3300028.. (original name was: 3300028625.a:Ga0302251_1003879); c00085_3300028.. (original name was: 3300028625.a:Ga0302251_1000780); c00086_3300028.. (original name was: 3300028625.a:Ga0302251_1001764); c00087_3300028.. (original name was: 3300028625.a:Ga0302251_1002026); c00088_3300028.. (original name was: 3300028625.a:Ga0302251_1000041); c00089_3300028.. (original name was: 3300028625.a:Ga0302251_1000119); c00090_3300028.. (original name was: 3300028625.a:Ga0302251_1000124); c00091_3300028.. (original name was: 3300028625.a:Ga0302251_1000120); c00092_3300028.. (original name was: 3300028625.a:Ga0302251_1008953); c00094_3300028.. (original name was: 3300028625.a:Ga0302251_1002248); c00095_3300028.. (original name was: 3300028625.a:Ga0302251_1000748); c00096_3300028.. (original name was: 3300028625.a:Ga0302251_1000359); c00097_3300028.. (original name was: 3300028625.a:Ga0302251_1000574); c00098_3300028.. (original name was: 3300028625.a:Ga0302251_1000979); c00099_3300028.. (original name was: 3300028625.a:Ga0302251_1000182); c00100_3300028.. (original name was: 3300028625.a:Ga0302251_1002820); c00101_3300028.. (original name was: 3300028625.a:Ga0302251_1008248); c00102_3300028.. (original name was: 3300028625.a:Ga0302251_1000288); c00103_3300028.. (original name was: 3300028625.a:Ga0302251_1008257); c00104_3300028.. (original name was: 3300028625.a:Ga0302251_1000079); c00105_3300028.. (original name was: 3300028625.a:Ga0302251_1000485); c00106_3300028.. (original name was: 3300028625.a:Ga0302251_1000088); c00107_3300028.. (original name was: 3300028625.a:Ga0302251_1004465); c00108_3300028.. (original name was: 3300028625.a:Ga0302251_1002678); c00109_3300028.. (original name was: 3300028625.a:Ga0302251_1001084); c00110_3300028.. (original name was: 3300028625.a:Ga0302251_1000140); c00111_3300028.. (original name was: 3300028625.a:Ga0302251_1000142); c00113_3300028.. (original name was: 3300028625.a:Ga0302251_1004144); c00114_3300028.. (original name was: 3300028625.a:Ga0302251_1003347); c00115_3300028.. (original name was: 3300028625.a:Ga0302251_1001763); c00116_3300028.. (original name was: 3300028625.a:Ga0302251_1000900); c00117_3300028.. (original name was: 3300028625.a:Ga0302251_1000104); c00118_3300028.. (original name was: 3300028625.a:Ga0302251_1000018); c00119_3300028.. (original name was: 3300028625.a:Ga0302251_1000854); c00120_3300028.. (original name was: 3300028625.a:Ga0302251_1000056); c00121_3300028.. (original name was: 3300028625.a:Ga0302251_1000131); c00122_3300028.. (original name was: 3300028625.a:Ga0302251_1000970); c00123_3300028.. (original name was: 3300028625.a:Ga0302251_1008539); c00124_3300028.. (original name was: 3300028625.a:Ga0302251_1005356); c00125_3300028.. (original name was: 3300028625.a:Ga0302251_1000885); c00127_3300028.. (original name was: 3300028625.a:Ga0302251_1000734); c00128_3300028.. (original name was: 3300028625.a:Ga0302251_1000337); c00129_3300028.. (original name was: 3300028625.a:Ga0302251_1000152); c00131_3300028.. (original name was: 3300028625.a:Ga0302251_1002482); c00132_3300028.. (original name was: 3300028625.a:Ga0302251_1001640); c00133_3300028.. (original name was: 3300028625.a:Ga0302251_1000050); c00134_3300028.. (original name was: 3300028625.a:Ga0302251_1000425); c00135_3300028.. (original name was: 3300028625.a:Ga0302251_1007627); c00136_3300028.. (original name was: 3300028625.a:Ga0302251_1000641); c00137_3300028.. (original name was: 3300028625.a:Ga0302251_1000861); c00138_3300028.. (original name was: 3300028625.a:Ga0302251_1000067); c00139_3300028.. (original name was: 3300028625.a:Ga0302251_1000065); c00140_3300028.. (original name was: 3300028625.a:Ga0302251_1000462); c00141_3300028.. (original name was: 3300028625.a:Ga0302251_1007376); c00142_3300028.. (original name was: 3300028625.a:Ga0302251_1007383); c00143_3300028.. (original name was: 3300028625.a:Ga0302251_1008300); c00144_3300028.. (original name was: 3300028625.a:Ga0302251_1000752); c00145_3300028.. (original name was: 3300028625.a:Ga0302251_1008641); c00146_3300028.. (original name was: 3300028625.a:Ga0302251_1000764); c00147_3300028.. (original name was: 3300028625.a:Ga0302251_1008726); c00148_3300028.. (original name was: 3300028625.a:Ga0302251_1002789); c00149_3300028.. (original name was: 3300028625.a:Ga0302251_1000404); c00150_3300028.. (original name was: 3300028625.a:Ga0302251_1000044); c00152_3300028.. (original name was: 3300028625.a:Ga0302251_1000121); c00153_3300028.. (original name was: 3300028625.a:Ga0302251_1001669); c00154_3300028.. (original name was: 3300028625.a:Ga0302251_1000125); c00155_3300028.. (original name was: 3300028625.a:Ga0302251_1000169); c00156_3300028.. (original name was: 3300028625.a:Ga0302251_1002995); c00158_3300028.. (original name was: 3300028625.a:Ga0302251_1000248); c00159_3300028.. (original name was: 3300028625.a:Ga0302251_1001845); c00161_3300028.. (original name was: 3300028625.a:Ga0302251_1004009); c00162_3300028.. (original name was: 3300028625.a:Ga0302251_1000426); c00163_3300028.. (original name was: 3300028625.a:Ga0302251_1000083); c00164_3300028.. (original name was: 3300028625.a:Ga0302251_1000081); c00165_3300028.. (original name was: 3300028625.a:Ga0302251_1000480); c00166_3300028.. (original name was: 3300028625.a:Ga0302251_1002156); c00167_3300028.. (original name was: 3300028625.a:Ga0302251_1000171); c00168_3300028.. (original name was: 3300028625.a:Ga0302251_1000565); c00169_3300028.. (original name was: 3300028625.a:Ga0302251_1000709); c00170_3300028.. (original name was: 3300028625.a:Ga0302251_1003922); c00171_3300028.. (original name was: 3300028625.a:Ga0302251_1000749); c00172_3300028.. (original name was: 3300028625.a:Ga0302251_1003227); c00173_3300028.. (original name was: 3300028625.a:Ga0302251_1001174); c00174_3300028.. (original name was: 3300028625.a:Ga0302251_1005548); c00175_3300028.. (original name was: 3300028625.a:Ga0302251_1008241); c00176_3300028.. (original name was: 3300028625.a:Ga0302251_1000281); c00177_3300028.. (original name was: 3300028625.a:Ga0302251_1003858); c00178_3300028.. (original name was: 3300028625.a:Ga0302251_1000435); c00179_3300028.. (original name was: 3300028625.a:Ga0302251_1002031); c00180_3300028.. (original name was: 3300028625.a:Ga0302251_1005214); c00181_3300028.. (original name was: 3300028625.a:Ga0302251_1006552); c00182_3300028.. (original name was: 3300028625.a:Ga0302251_1003367); c00183_3300028.. (original name was: 3300028625.a:Ga0302251_1008532); c00184_3300028.. (original name was: 3300028625.a:Ga0302251_1000025); c00185_3300028.. (original name was: 3300028625.a:Ga0302251_1000027); c00186_3300028.. (original name was: 3300028625.a:Ga0302251_1000092)

Compact view

c00029_3300028.. - Region 1 - NRPS

Download region GenBank file

Location: 111,650 - 156,050 nt. (total: 44,401 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 111649 - 156050:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - D-X - thr - ile - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg29_114

Search NORINE for peptide: strict or relaxed

AMP-binding (516..926): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DitnLGVViK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

AMP-binding (1586..1983): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAllVgAVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (4162..4468): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWsIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 90% (moderate)

AMP-binding (5127..5556): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

AMP-binding (6631..7036): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00040_3300028.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 28,536 nt. (total: 28,536 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 28536:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - tyr) + (asn - D-tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg40_6

Search NORINE for peptide: strict or relaxed

AMP-binding (468..877): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAtviGAICK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 70% (weak)

AMP-binding (1521..1928): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASdIAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

ctg40_7

Search NORINE for peptide: strict or relaxed

AMP-binding (530..935): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKfGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1579..1986): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASdIAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

c00049_3300028.. - Region 1 - NRPS

Download region GenBank file

Location: 9,524 - 40,668 nt. (total: 31,145 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 9523 - 40668:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg49_33

Search NORINE for peptide: strict or relaxed

AMP-binding (264..672): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DAatVGqVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 70% (weak)

AMP-binding (1349..1764): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAYFsGacyK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

c00055_3300028.. - Region 1 - sactipeptide

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Location: 30,525 - 51,847 nt. (total: 21,323 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

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Sactipeptides

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00093_3300028.. - Region 1 - bacteriocin

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Location: 19,012 - 31,295 nt. (total: 12,284 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00112_3300028.. - Region 1 - TfuA-related,bacteriocin,thiopeptide

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Location: 23,416 - 52,321 nt. (total: 28,906 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)
TfuA-related: ((YcaO or TIGR03882) and TfuA)
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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Thiopeptides

Thiopeptide predictions

No core peptides found.

Thiopeptides

Core peptide predictions

No core peptides found.

c00126_3300028.. - Region 1 - NRPS

Download region GenBank file

Location: 18,829 - 66,664 nt. (total: 47,836 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 18828 - 66664:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg126_32

Search NORINE for peptide: strict or relaxed

AMP-binding (464..848): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: pro
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DVmFdAGVLK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 80% (moderate)

AMP-binding (1491..1874): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAahVGEVaK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

c00130_3300028.. - Region 1 - hglE-KS

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Location: 27,114 - 69,144 nt. (total: 42,031 nt) Show pHMM detection rules used

hglE-KS: (hglE or hglD)

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c00151_3300028.. - Region 1 - NRPS,T1PKS,hglE-KS

Download region GenBank file

Location: 2,712 - 97,093 nt. (total: 94,382 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 2711 - 97093:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal - ser - D-ser - X - pro - thr - ser) + (ccmal) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 2711 - 56738:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 34101 - 97093:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal) + (ccmal) + (mal - ser - D-ser - X - pro - thr - ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg151_16

PKS_AT (1057..1357): pk

minowa: Isobutyryl-CoA

Prediction, score:

Isobutyryl-CoA: 19.4
Methylmalonyl-CoA: 19.0
Propionyl-CoA: 17.4
Methoxymalonyl-CoA: 17.2
2-Methylbutyryl-CoA: 15.8
trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Malonyl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%

ctg151_17

PKS_AT (577..880): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 71.4
Methoxymalonyl-CoA: 35.9
Methylmalonyl-CoA: 34.8
Propionyl-CoA: 23.4
inactive: 16.8
Isobutyryl-CoA: 13.0
CHC-CoA: 10.6
fatty_acid: 10.4
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 62.5%

ctg151_33

PKS_AT (14..307): mmal

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 71.3
Methoxymalonyl-CoA: 61.7
Isobutyryl-CoA: 40.6
CHC-CoA: 33.4
Propionyl-CoA: 32.1
Malonyl-CoA: 30.1
Benzoyl-CoA: 27.9
2-Methylbutyryl-CoA: 20.9
trans-1,2-CPDA: 17.6
fatty_acid: 15.8
Acetyl-CoA: 13.2
inactive: 12.2
3-Methylbutyryl-CoA: 4.6
Ethylmalonyl-CoA: 3.3

ATSignature: (unknown)

No matches above 50%

PKS_AT (915..1210): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 176.5
inactive: 121.5
Methoxymalonyl-CoA: 55.6
Methylmalonyl-CoA: 54.3
Benzoyl-CoA: 34.5
Isobutyryl-CoA: 33.2
Propionyl-CoA: 28.6
Acetyl-CoA: 23.7
Ethylmalonyl-CoA: 15.0
2-Methylbutyryl-CoA: 15.0
CHC-CoA: 13.5
fatty_acid: 10.8
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

ctg151_34

Search NORINE for peptide: strict or relaxed

PKS_AT (599..919): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 192.0
inactive: 137.3
Methoxymalonyl-CoA: 62.7
Methylmalonyl-CoA: 60.2
Isobutyryl-CoA: 35.4
Benzoyl-CoA: 29.9
Ethylmalonyl-CoA: 29.5
Propionyl-CoA: 28.8
CHC-CoA: 16.8
Acetyl-CoA: 15.3
2-Methylbutyryl-CoA: 15.3
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

AMP-binding (2184..2580): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWnlSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 80% (moderate)

AMP-binding (3261..3669): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (4792..5203): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvSdLGlIyK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 60% (weak)

AMP-binding (5864..6293): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQYIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (6953..7360): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWsIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 90% (moderate)

AMP-binding (8439..8858): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00157_3300028.. - Region 1 - NRPS

Download region GenBank file

Location: 22,678 - 67,269 nt. (total: 44,592 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 22677 - 67269:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg157_37

Search NORINE for peptide: strict or relaxed

AMP-binding (478..862): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAphAGeVtK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 60% (weak)

AMP-binding (2427..2811): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmiIgGVCK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

c00160_3300028.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 26,942 nt. (total: 26,942 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains