3300029233_1 - 10 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00007_3300029.. (original name was: 3300029233.a:Ga0168116_1001387)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS	1	5,221

c00058_3300029.. (original name was: 3300029233.a:Ga0168116_1000008)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS,T1PKS	1	43,245

c00071_3300029.. (original name was: 3300029233.a:Ga0168116_1000225)

Region	Type	From	To	Most similar known cluster		Similarity
Region 71.1	NRPS	1	16,816

c00085_3300029.. (original name was: 3300029233.a:Ga0168116_1000035)

Region	Type	From	To	Most similar known cluster		Similarity
Region 85.1	betalactone	1	20,598

c00116_3300029.. (original name was: 3300029233.a:Ga0168116_1000033)

Region	Type	From	To	Most similar known cluster		Similarity
Region 116.1	terpene	43,751	60,984

c00124_3300029.. (original name was: 3300029233.a:Ga0168116_1000115)

Region	Type	From	To	Most similar known cluster		Similarity
Region 124.1	phosphonate	1	27,424

c00132_3300029.. (original name was: 3300029233.a:Ga0168116_1000013)

Region	Type	From	To	Most similar known cluster		Similarity
Region 132.1	terpene	12,059	32,991

c00137_3300029.. (original name was: 3300029233.a:Ga0168116_1000003)

Region	Type	From	To	Most similar known cluster		Similarity
Region 137.1	bacteriocin	83,930	95,795

c00142_3300029.. (original name was: 3300029233.a:Ga0168116_1000010)

Region	Type	From	To	Most similar known cluster		Similarity
Region 142.1	NRPS	1	46,054

c00146_3300029.. (original name was: 3300029233.a:Ga0168116_1000026)

Region	Type	From	To	Most similar known cluster		Similarity
Region 146.1	terpene	39,963	60,835

Region	Type	From	To	Similarity
Region 7.1	NRPS	1	5,221
Region 58.1	NRPS,T1PKS	1	43,245
Region 71.1	NRPS	1	16,816
Region 85.1	betalactone	1	20,598
Region 116.1	terpene	43,751	60,984
Region 124.1	phosphonate	1	27,424
Region 132.1	terpene	12,059	32,991
Region 137.1	bacteriocin	83,930	95,795
Region 142.1	NRPS	1	46,054
Region 146.1	terpene	39,963	60,835

No secondary metabolite regions were found in these records:: c00001_3300029.. (original name was: 3300029233.a:Ga0168116_1003234); c00002_3300029.. (original name was: 3300029233.a:Ga0168116_1002701); c00003_3300029.. (original name was: 3300029233.a:Ga0168116_1002491); c00004_3300029.. (original name was: 3300029233.a:Ga0168116_1002127); c00005_3300029.. (original name was: 3300029233.a:Ga0168116_1001837); c00006_3300029.. (original name was: 3300029233.a:Ga0168116_1001501); c00008_3300029.. (original name was: 3300029233.a:Ga0168116_1001171); c00009_3300029.. (original name was: 3300029233.a:Ga0168116_1000591); c00010_3300029.. (original name was: 3300029233.a:Ga0168116_1000421); c00011_3300029.. (original name was: 3300029233.a:Ga0168116_1001021); c00012_3300029.. (original name was: 3300029233.a:Ga0168116_1000357); c00013_3300029.. (original name was: 3300029233.a:Ga0168116_1000274); c00014_3300029.. (original name was: 3300029233.a:Ga0168116_1000224); c00015_3300029.. (original name was: 3300029233.a:Ga0168116_1000201); c00016_3300029.. (original name was: 3300029233.a:Ga0168116_1000074); c00017_3300029.. (original name was: 3300029233.a:Ga0168116_1000064); c00018_3300029.. (original name was: 3300029233.a:Ga0168116_1000037); c00019_3300029.. (original name was: 3300029233.a:Ga0168116_1000034); c00020_3300029.. (original name was: 3300029233.a:Ga0168116_1000031); c00021_3300029.. (original name was: 3300029233.a:Ga0168116_1000027); c00022_3300029.. (original name was: 3300029233.a:Ga0168116_1000001); c00023_3300029.. (original name was: 3300029233.a:Ga0168116_1003453); c00024_3300029.. (original name was: 3300029233.a:Ga0168116_1000021); c00025_3300029.. (original name was: 3300029233.a:Ga0168116_1003119); c00026_3300029.. (original name was: 3300029233.a:Ga0168116_1000011); c00027_3300029.. (original name was: 3300029233.a:Ga0168116_1002910); c00028_3300029.. (original name was: 3300029233.a:Ga0168116_1001217); c00029_3300029.. (original name was: 3300029233.a:Ga0168116_1002323); c00030_3300029.. (original name was: 3300029233.a:Ga0168116_1000331); c00031_3300029.. (original name was: 3300029233.a:Ga0168116_1001659); c00032_3300029.. (original name was: 3300029233.a:Ga0168116_1001523); c00033_3300029.. (original name was: 3300029233.a:Ga0168116_1001380); c00034_3300029.. (original name was: 3300029233.a:Ga0168116_1001223); c00035_3300029.. (original name was: 3300029233.a:Ga0168116_1001123); c00036_3300029.. (original name was: 3300029233.a:Ga0168116_1001040); c00037_3300029.. (original name was: 3300029233.a:Ga0168116_1001023); c00038_3300029.. (original name was: 3300029233.a:Ga0168116_1001970); c00039_3300029.. (original name was: 3300029233.a:Ga0168116_1000903); c00040_3300029.. (original name was: 3300029233.a:Ga0168116_1000846); c00041_3300029.. (original name was: 3300029233.a:Ga0168116_1000660); c00042_3300029.. (original name was: 3300029233.a:Ga0168116_1000613); c00043_3300029.. (original name was: 3300029233.a:Ga0168116_1001047); c00044_3300029.. (original name was: 3300029233.a:Ga0168116_1001348); c00045_3300029.. (original name was: 3300029233.a:Ga0168116_1002341); c00046_3300029.. (original name was: 3300029233.a:Ga0168116_1002642); c00047_3300029.. (original name was: 3300029233.a:Ga0168116_1000182); c00048_3300029.. (original name was: 3300029233.a:Ga0168116_1000678); c00049_3300029.. (original name was: 3300029233.a:Ga0168116_1000032); c00050_3300029.. (original name was: 3300029233.a:Ga0168116_1001004); c00051_3300029.. (original name was: 3300029233.a:Ga0168116_1000642); c00052_3300029.. (original name was: 3300029233.a:Ga0168116_1001184); c00053_3300029.. (original name was: 3300029233.a:Ga0168116_1001800); c00054_3300029.. (original name was: 3300029233.a:Ga0168116_1001485); c00055_3300029.. (original name was: 3300029233.a:Ga0168116_1000354); c00056_3300029.. (original name was: 3300029233.a:Ga0168116_1003169); c00057_3300029.. (original name was: 3300029233.a:Ga0168116_1000655); c00059_3300029.. (original name was: 3300029233.a:Ga0168116_1000004); c00060_3300029.. (original name was: 3300029233.a:Ga0168116_1001493); c00061_3300029.. (original name was: 3300029233.a:Ga0168116_1000412); c00062_3300029.. (original name was: 3300029233.a:Ga0168116_1000392); c00063_3300029.. (original name was: 3300029233.a:Ga0168116_1001351); c00064_3300029.. (original name was: 3300029233.a:Ga0168116_1000325); c00065_3300029.. (original name was: 3300029233.a:Ga0168116_1000014); c00066_3300029.. (original name was: 3300029233.a:Ga0168116_1000315); c00067_3300029.. (original name was: 3300029233.a:Ga0168116_1000039); c00068_3300029.. (original name was: 3300029233.a:Ga0168116_1000295); c00069_3300029.. (original name was: 3300029233.a:Ga0168116_1000141); c00070_3300029.. (original name was: 3300029233.a:Ga0168116_1000023); c00072_3300029.. (original name was: 3300029233.a:Ga0168116_1000447); c00073_3300029.. (original name was: 3300029233.a:Ga0168116_1000085); c00074_3300029.. (original name was: 3300029233.a:Ga0168116_1000041); c00075_3300029.. (original name was: 3300029233.a:Ga0168116_1002933); c00076_3300029.. (original name was: 3300029233.a:Ga0168116_1002995); c00077_3300029.. (original name was: 3300029233.a:Ga0168116_1000518); c00078_3300029.. (original name was: 3300029233.a:Ga0168116_1000048); c00079_3300029.. (original name was: 3300029233.a:Ga0168116_1000125); c00080_3300029.. (original name was: 3300029233.a:Ga0168116_1000404); c00081_3300029.. (original name was: 3300029233.a:Ga0168116_1000042); c00082_3300029.. (original name was: 3300029233.a:Ga0168116_1003559); c00083_3300029.. (original name was: 3300029233.a:Ga0168116_1000076); c00084_3300029.. (original name was: 3300029233.a:Ga0168116_1000818); c00086_3300029.. (original name was: 3300029233.a:Ga0168116_1000087); c00087_3300029.. (original name was: 3300029233.a:Ga0168116_1000082); c00088_3300029.. (original name was: 3300029233.a:Ga0168116_1003127); c00089_3300029.. (original name was: 3300029233.a:Ga0168116_1000112); c00090_3300029.. (original name was: 3300029233.a:Ga0168116_1001214); c00091_3300029.. (original name was: 3300029233.a:Ga0168116_1001326); c00092_3300029.. (original name was: 3300029233.a:Ga0168116_1000188); c00093_3300029.. (original name was: 3300029233.a:Ga0168116_1000709); c00094_3300029.. (original name was: 3300029233.a:Ga0168116_1001355); c00095_3300029.. (original name was: 3300029233.a:Ga0168116_1000231); c00096_3300029.. (original name was: 3300029233.a:Ga0168116_1000090); c00097_3300029.. (original name was: 3300029233.a:Ga0168116_1001904); c00098_3300029.. (original name was: 3300029233.a:Ga0168116_1000215); c00099_3300029.. (original name was: 3300029233.a:Ga0168116_1000258); c00100_3300029.. (original name was: 3300029233.a:Ga0168116_1000102); c00101_3300029.. (original name was: 3300029233.a:Ga0168116_1000120); c00102_3300029.. (original name was: 3300029233.a:Ga0168116_1001275); c00103_3300029.. (original name was: 3300029233.a:Ga0168116_1003194); c00104_3300029.. (original name was: 3300029233.a:Ga0168116_1000178); c00105_3300029.. (original name was: 3300029233.a:Ga0168116_1000018); c00106_3300029.. (original name was: 3300029233.a:Ga0168116_1000007); c00107_3300029.. (original name was: 3300029233.a:Ga0168116_1001635); c00108_3300029.. (original name was: 3300029233.a:Ga0168116_1003540); c00109_3300029.. (original name was: 3300029233.a:Ga0168116_1001152); c00110_3300029.. (original name was: 3300029233.a:Ga0168116_1000059); c00111_3300029.. (original name was: 3300029233.a:Ga0168116_1000395); c00112_3300029.. (original name was: 3300029233.a:Ga0168116_1000092); c00113_3300029.. (original name was: 3300029233.a:Ga0168116_1001278); c00114_3300029.. (original name was: 3300029233.a:Ga0168116_1000154); c00115_3300029.. (original name was: 3300029233.a:Ga0168116_1001118); c00117_3300029.. (original name was: 3300029233.a:Ga0168116_1001203); c00118_3300029.. (original name was: 3300029233.a:Ga0168116_1000025); c00119_3300029.. (original name was: 3300029233.a:Ga0168116_1000063); c00120_3300029.. (original name was: 3300029233.a:Ga0168116_1000062); c00121_3300029.. (original name was: 3300029233.a:Ga0168116_1001388); c00122_3300029.. (original name was: 3300029233.a:Ga0168116_1000067); c00123_3300029.. (original name was: 3300029233.a:Ga0168116_1002358); c00125_3300029.. (original name was: 3300029233.a:Ga0168116_1000122); c00126_3300029.. (original name was: 3300029233.a:Ga0168116_1000128); c00127_3300029.. (original name was: 3300029233.a:Ga0168116_1001565); c00128_3300029.. (original name was: 3300029233.a:Ga0168116_1000006); c00129_3300029.. (original name was: 3300029233.a:Ga0168116_1000101); c00130_3300029.. (original name was: 3300029233.a:Ga0168116_1000490); c00131_3300029.. (original name was: 3300029233.a:Ga0168116_1001575); c00133_3300029.. (original name was: 3300029233.a:Ga0168116_1002098); c00134_3300029.. (original name was: 3300029233.a:Ga0168116_1002772); c00135_3300029.. (original name was: 3300029233.a:Ga0168116_1001405); c00136_3300029.. (original name was: 3300029233.a:Ga0168116_1000742); c00138_3300029.. (original name was: 3300029233.a:Ga0168116_1001402); c00139_3300029.. (original name was: 3300029233.a:Ga0168116_1002728); c00140_3300029.. (original name was: 3300029233.a:Ga0168116_1000246); c00141_3300029.. (original name was: 3300029233.a:Ga0168116_1001006); c00143_3300029.. (original name was: 3300029233.a:Ga0168116_1000016); c00144_3300029.. (original name was: 3300029233.a:Ga0168116_1001461); c00145_3300029.. (original name was: 3300029233.a:Ga0168116_1000019); c00147_3300029.. (original name was: 3300029233.a:Ga0168116_1003422); c00148_3300029.. (original name was: 3300029233.a:Ga0168116_1000105); c00149_3300029.. (original name was: 3300029233.a:Ga0168116_1000269); c00150_3300029.. (original name was: 3300029233.a:Ga0168116_1000036); c00151_3300029.. (original name was: 3300029233.a:Ga0168116_1000043); c00152_3300029.. (original name was: 3300029233.a:Ga0168116_1000053); c00153_3300029.. (original name was: 3300029233.a:Ga0168116_1000056); c00154_3300029.. (original name was: 3300029233.a:Ga0168116_1001056); c00155_3300029.. (original name was: 3300029233.a:Ga0168116_1000060); c00156_3300029.. (original name was: 3300029233.a:Ga0168116_1000197); c00157_3300029.. (original name was: 3300029233.a:Ga0168116_1000498); c00158_3300029.. (original name was: 3300029233.a:Ga0168116_1000066); c00159_3300029.. (original name was: 3300029233.a:Ga0168116_1000515); c00160_3300029.. (original name was: 3300029233.a:Ga0168116_1000079); c00161_3300029.. (original name was: 3300029233.a:Ga0168116_1001156); c00162_3300029.. (original name was: 3300029233.a:Ga0168116_1000160); c00163_3300029.. (original name was: 3300029233.a:Ga0168116_1000230); c00164_3300029.. (original name was: 3300029233.a:Ga0168116_1002253); c00165_3300029.. (original name was: 3300029233.a:Ga0168116_1000263); c00166_3300029.. (original name was: 3300029233.a:Ga0168116_1002380); c00167_3300029.. (original name was: 3300029233.a:Ga0168116_1000390); c00168_3300029.. (original name was: 3300029233.a:Ga0168116_1000057); c00169_3300029.. (original name was: 3300029233.a:Ga0168116_1000459)

Compact view

c00007_3300029.. - Region 1 - NRPS

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Location: 1 - 5,221 nt. (total: 5,221 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5221:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg7_2

Search NORINE for peptide: strict or relaxed

AMP-binding (487..900): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00058_3300029.. - Region 1 - NRPS,T1PKS

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Location: 1 - 43,245 nt. (total: 43,245 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 43245:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg58_1

Search NORINE for peptide: strict or relaxed

AMP-binding (482..892): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

ctg58_8

PKS_AT (542..826): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 192.8
inactive: 116.8
Methoxymalonyl-CoA: 77.0
Methylmalonyl-CoA: 66.8
Propionyl-CoA: 48.3
Ethylmalonyl-CoA: 32.9
Isobutyryl-CoA: 32.7
2-Methylbutyryl-CoA: 27.1
CHC-CoA: 21.8
Benzoyl-CoA: 18.4
trans-1,2-CPDA: 17.2
Acetyl-CoA: 14.3
fatty_acid: 12.7
3-Methylbutyryl-CoA: 7.6

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 58.3%

ctg58_10

Search NORINE for peptide: strict or relaxed

CAL_domain (42..488): pk

minowa: NH2

Prediction, score:

NH2: 37.6
fatty_acid: 22.5
AHBA: 18.6
Acetyl-CoA: 7.1
shikimic_acid: 2.5

AMP-binding (1154..1561): X

NRPSPredictor2: orn, lys, arg

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVenIGSItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

c00071_3300029.. - Region 1 - NRPS

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Location: 1 - 16,816 nt. (total: 16,816 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 16816:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg71_1

Search NORINE for peptide: strict or relaxed

AMP-binding (463..862): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKLGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1523..1930): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVegIGaItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

ctg71_2

Search NORINE for peptide: strict or relaxed

AMP-binding (481..883): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1586..1994): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00085_3300029.. - Region 1 - betalactone

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Location: 1 - 20,598 nt. (total: 20,598 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00116_3300029.. - Region 1 - terpene

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Location: 43,751 - 60,984 nt. (total: 17,234 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00124_3300029.. - Region 1 - phosphonate

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Location: 1 - 27,424 nt. (total: 27,424 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: phosphonates

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00132_3300029.. - Region 1 - terpene

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Location: 12,059 - 32,991 nt. (total: 20,933 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00137_3300029.. - Region 1 - bacteriocin

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Location: 83,930 - 95,795 nt. (total: 11,866 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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c00142_3300029.. - Region 1 - NRPS

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Location: 1 - 46,054 nt. (total: 46,054 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 46054:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg142_20

Search NORINE for peptide: strict or relaxed

CAL_domain (45..484): pk

minowa: Acetyl-CoA

Prediction, score:

Acetyl-CoA: 42.5
fatty_acid: 23.5
NH2: 19.1
AHBA: 14.5
shikimic_acid: 0.0

AMP-binding (1177..1585): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DTEdiGTvaK
Nearest Stachelhaus code:: lys-b
Stachelhaus code match:: 60% (weak)

AMP-binding (2253..2646): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGVIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

c00146_3300029.. - Region 1 - terpene

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Location: 39,963 - 60,835 nt. (total: 20,873 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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