3300029556_29 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00010_3300029.. (original name was: 3300029556.a:Ga0244975_100922)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	sactipeptide	12,218	32,373

c00018_3300029.. (original name was: 3300029556.a:Ga0244975_100147)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	NRPS	1	40,043

Region	Type	From	To	Most similar known cluster	Similarity
Region 10.1	sactipeptide	12,218	32,373
Region 18.1	NRPS	1	40,043

No secondary metabolite regions were found in these records:: c00001_3300029.. (original name was: 3300029556.a:Ga0244975_103777); c00002_3300029.. (original name was: 3300029556.a:Ga0244975_103250); c00003_3300029.. (original name was: 3300029556.a:Ga0244975_103199); c00004_3300029.. (original name was: 3300029556.a:Ga0244975_101904); c00005_3300029.. (original name was: 3300029556.a:Ga0244975_100709); c00006_3300029.. (original name was: 3300029556.a:Ga0244975_100488); c00007_3300029.. (original name was: 3300029556.a:Ga0244975_100415); c00008_3300029.. (original name was: 3300029556.a:Ga0244975_100808); c00009_3300029.. (original name was: 3300029556.a:Ga0244975_100292); c00011_3300029.. (original name was: 3300029556.a:Ga0244975_100060); c00012_3300029.. (original name was: 3300029556.a:Ga0244975_100149); c00013_3300029.. (original name was: 3300029556.a:Ga0244975_100254); c00014_3300029.. (original name was: 3300029556.a:Ga0244975_101220); c00015_3300029.. (original name was: 3300029556.a:Ga0244975_100035); c00016_3300029.. (original name was: 3300029556.a:Ga0244975_100080); c00017_3300029.. (original name was: 3300029556.a:Ga0244975_100137)

Compact view

c00010_3300029.. - Region 1 - sactipeptide

Download region GenBank file

Location: 12,218 - 32,373 nt. (total: 20,156 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Sactipeptides

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00018_3300029.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 40,043 nt. (total: 40,043 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 40043:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_14

Search NORINE for peptide: strict or relaxed

AMP-binding (19..418): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DVmadGgIsK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 50% (weak)

AMP-binding (1034..1420): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmFsGgiFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

AMP-binding (2026..2417): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfTTGgVsK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)