3300029847_31 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00003_3300029.. (original name was: 3300029847.a:Ga0245281_100207)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	31,726	80,707

c00008_3300029.. (original name was: 3300029847.a:Ga0245281_101536)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	sactipeptide	6,897	18,790

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	NRPS	31,726	80,707
Region 8.1	sactipeptide	6,897	18,790

No secondary metabolite regions were found in these records:: c00001_3300029.. (original name was: 3300029847.a:Ga0245281_100851); c00002_3300029.. (original name was: 3300029847.a:Ga0245281_100481); c00004_3300029.. (original name was: 3300029847.a:Ga0245281_100107); c00005_3300029.. (original name was: 3300029847.a:Ga0245281_102286); c00006_3300029.. (original name was: 3300029847.a:Ga0245281_101546); c00007_3300029.. (original name was: 3300029847.a:Ga0245281_107898); c00009_3300029.. (original name was: 3300029847.a:Ga0245281_100462); c00010_3300029.. (original name was: 3300029847.a:Ga0245281_100160); c00011_3300029.. (original name was: 3300029847.a:Ga0245281_100909); c00012_3300029.. (original name was: 3300029847.a:Ga0245281_100928); c00013_3300029.. (original name was: 3300029847.a:Ga0245281_100070); c00014_3300029.. (original name was: 3300029847.a:Ga0245281_109122); c00015_3300029.. (original name was: 3300029847.a:Ga0245281_100443); c00016_3300029.. (original name was: 3300029847.a:Ga0245281_100258); c00017_3300029.. (original name was: 3300029847.a:Ga0245281_100209); c00018_3300029.. (original name was: 3300029847.a:Ga0245281_100193); c00019_3300029.. (original name was: 3300029847.a:Ga0245281_100303); c00020_3300029.. (original name was: 3300029847.a:Ga0245281_100420); c00021_3300029.. (original name was: 3300029847.a:Ga0245281_100430); c00022_3300029.. (original name was: 3300029847.a:Ga0245281_101194); c00023_3300029.. (original name was: 3300029847.a:Ga0245281_101155); c00024_3300029.. (original name was: 3300029847.a:Ga0245281_100215); c00025_3300029.. (original name was: 3300029847.a:Ga0245281_101350); c00026_3300029.. (original name was: 3300029847.a:Ga0245281_100138); c00027_3300029.. (original name was: 3300029847.a:Ga0245281_100470); c00028_3300029.. (original name was: 3300029847.a:Ga0245281_100526); c00029_3300029.. (original name was: 3300029847.a:Ga0245281_100929); c00030_3300029.. (original name was: 3300029847.a:Ga0245281_100743)

Compact view

c00003_3300029.. - Region 1 - NRPS

Download region GenBank file

Location: 31,726 - 80,707 nt. (total: 48,982 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 31725 - 80707:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_39

Search NORINE for peptide: strict or relaxed

AMP-binding (19..418): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DvmadGGIsK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 50% (weak)

AMP-binding (1033..1420): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmfsGGiFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

AMP-binding (2026..2417): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfTTGgVsK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

c00008_3300029.. - Region 1 - sactipeptide

Download region GenBank file

Location: 6,897 - 18,790 nt. (total: 11,894 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Sactipeptides

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.