3300029848_29 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00038_3300029.. (original name was: 3300029848.a:Ga0245285_1000749)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	sactipeptide	4,351	24,506

c00047_3300029.. (original name was: 3300029848.a:Ga0245285_1000838)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS	1	33,399

Region	Type	From	To	Most similar known cluster	Similarity
Region 38.1	sactipeptide	4,351	24,506
Region 47.1	NRPS	1	33,399

No secondary metabolite regions were found in these records:: c00001_3300029.. (original name was: 3300029848.a:Ga0245285_1008319); c00002_3300029.. (original name was: 3300029848.a:Ga0245285_1006636); c00003_3300029.. (original name was: 3300029848.a:Ga0245285_1003923); c00004_3300029.. (original name was: 3300029848.a:Ga0245285_1009602); c00005_3300029.. (original name was: 3300029848.a:Ga0245285_1003390); c00006_3300029.. (original name was: 3300029848.a:Ga0245285_1002977); c00007_3300029.. (original name was: 3300029848.a:Ga0245285_1003053); c00008_3300029.. (original name was: 3300029848.a:Ga0245285_1002661); c00009_3300029.. (original name was: 3300029848.a:Ga0245285_1002254); c00010_3300029.. (original name was: 3300029848.a:Ga0245285_1003505); c00011_3300029.. (original name was: 3300029848.a:Ga0245285_1001565); c00012_3300029.. (original name was: 3300029848.a:Ga0245285_1001451); c00013_3300029.. (original name was: 3300029848.a:Ga0245285_1001345); c00014_3300029.. (original name was: 3300029848.a:Ga0245285_1001136); c00015_3300029.. (original name was: 3300029848.a:Ga0245285_1001033); c00016_3300029.. (original name was: 3300029848.a:Ga0245285_1000971); c00017_3300029.. (original name was: 3300029848.a:Ga0245285_1006741); c00018_3300029.. (original name was: 3300029848.a:Ga0245285_1002324); c00019_3300029.. (original name was: 3300029848.a:Ga0245285_1004336); c00020_3300029.. (original name was: 3300029848.a:Ga0245285_1000575); c00021_3300029.. (original name was: 3300029848.a:Ga0245285_1003364); c00022_3300029.. (original name was: 3300029848.a:Ga0245285_1002873); c00023_3300029.. (original name was: 3300029848.a:Ga0245285_1000201); c00024_3300029.. (original name was: 3300029848.a:Ga0245285_1002602); c00025_3300029.. (original name was: 3300029848.a:Ga0245285_1002257); c00026_3300029.. (original name was: 3300029848.a:Ga0245285_1007012); c00027_3300029.. (original name was: 3300029848.a:Ga0245285_1001582); c00028_3300029.. (original name was: 3300029848.a:Ga0245285_1000941); c00029_3300029.. (original name was: 3300029848.a:Ga0245285_1003944); c00030_3300029.. (original name was: 3300029848.a:Ga0245285_1009057); c00031_3300029.. (original name was: 3300029848.a:Ga0245285_1001486); c00032_3300029.. (original name was: 3300029848.a:Ga0245285_1000126); c00033_3300029.. (original name was: 3300029848.a:Ga0245285_1001239); c00034_3300029.. (original name was: 3300029848.a:Ga0245285_1002866); c00035_3300029.. (original name was: 3300029848.a:Ga0245285_1007656); c00036_3300029.. (original name was: 3300029848.a:Ga0245285_1000650); c00037_3300029.. (original name was: 3300029848.a:Ga0245285_1005629); c00039_3300029.. (original name was: 3300029848.a:Ga0245285_1004217); c00040_3300029.. (original name was: 3300029848.a:Ga0245285_1006424); c00041_3300029.. (original name was: 3300029848.a:Ga0245285_1001147); c00042_3300029.. (original name was: 3300029848.a:Ga0245285_1000576); c00043_3300029.. (original name was: 3300029848.a:Ga0245285_1000965); c00044_3300029.. (original name was: 3300029848.a:Ga0245285_1002378); c00045_3300029.. (original name was: 3300029848.a:Ga0245285_1001339); c00046_3300029.. (original name was: 3300029848.a:Ga0245285_1005600); c00048_3300029.. (original name was: 3300029848.a:Ga0245285_1002064); c00049_3300029.. (original name was: 3300029848.a:Ga0245285_1001813); c00050_3300029.. (original name was: 3300029848.a:Ga0245285_1002942); c00051_3300029.. (original name was: 3300029848.a:Ga0245285_1002676); c00052_3300029.. (original name was: 3300029848.a:Ga0245285_1002886); c00053_3300029.. (original name was: 3300029848.a:Ga0245285_1000326); c00054_3300029.. (original name was: 3300029848.a:Ga0245285_1009776); c00055_3300029.. (original name was: 3300029848.a:Ga0245285_1008860); c00056_3300029.. (original name was: 3300029848.a:Ga0245285_1001229); c00057_3300029.. (original name was: 3300029848.a:Ga0245285_1008705); c00058_3300029.. (original name was: 3300029848.a:Ga0245285_1000295); c00059_3300029.. (original name was: 3300029848.a:Ga0245285_1010203); c00060_3300029.. (original name was: 3300029848.a:Ga0245285_1002574); c00061_3300029.. (original name was: 3300029848.a:Ga0245285_1002878); c00062_3300029.. (original name was: 3300029848.a:Ga0245285_1001857); c00063_3300029.. (original name was: 3300029848.a:Ga0245285_1003367); c00064_3300029.. (original name was: 3300029848.a:Ga0245285_1002296); c00065_3300029.. (original name was: 3300029848.a:Ga0245285_1003422); c00066_3300029.. (original name was: 3300029848.a:Ga0245285_1002181); c00067_3300029.. (original name was: 3300029848.a:Ga0245285_1002506); c00068_3300029.. (original name was: 3300029848.a:Ga0245285_1002968); c00069_3300029.. (original name was: 3300029848.a:Ga0245285_1004824); c00070_3300029.. (original name was: 3300029848.a:Ga0245285_1003345); c00071_3300029.. (original name was: 3300029848.a:Ga0245285_1006232); c00072_3300029.. (original name was: 3300029848.a:Ga0245285_1001721); c00073_3300029.. (original name was: 3300029848.a:Ga0245285_1003279); c00074_3300029.. (original name was: 3300029848.a:Ga0245285_1008728); c00075_3300029.. (original name was: 3300029848.a:Ga0245285_1007825); c00076_3300029.. (original name was: 3300029848.a:Ga0245285_1003495); c00077_3300029.. (original name was: 3300029848.a:Ga0245285_1000790); c00078_3300029.. (original name was: 3300029848.a:Ga0245285_1003862); c00079_3300029.. (original name was: 3300029848.a:Ga0245285_1001115); c00080_3300029.. (original name was: 3300029848.a:Ga0245285_1002609); c00081_3300029.. (original name was: 3300029848.a:Ga0245285_1000596); c00082_3300029.. (original name was: 3300029848.a:Ga0245285_1006499); c00083_3300029.. (original name was: 3300029848.a:Ga0245285_1005013); c00084_3300029.. (original name was: 3300029848.a:Ga0245285_1005776); c00085_3300029.. (original name was: 3300029848.a:Ga0245285_1001715); c00086_3300029.. (original name was: 3300029848.a:Ga0245285_1001456); c00087_3300029.. (original name was: 3300029848.a:Ga0245285_1006436); c00088_3300029.. (original name was: 3300029848.a:Ga0245285_1000868)

Compact view

c00038_3300029.. - Region 1 - sactipeptide

Download region GenBank file

Location: 4,351 - 24,506 nt. (total: 20,156 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Sactipeptides

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00047_3300029.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 33,399 nt. (total: 33,399 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33399:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg47_22

Search NORINE for peptide: strict or relaxed

AMP-binding (145..533): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmFsGgiFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

AMP-binding (1139..1530): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfTTGgVsK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

ctg47_23

Search NORINE for peptide: strict or relaxed

AMP-binding (0..242): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvmadGGIsK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 50% (weak)