test data for debugging a crash in pindel can be deleted after oct 2014 pindel -f Oryza_sativa_v7.0.fa -i mini.2.pindel.config -c Chr12 -o mini.2 --report_long_insertions false --report_breakpoints false --report_close_mapped_reads false --report_duplications true --report_inversions false --report_interchromasomal_events false 2> mini.2.stderr > mini.2.stdout