##INPUT PARAMETERS##
#Reference file:	[/global/dna/shared/rqc/ref_databases/qaqc/databases/illumina.artifacts/Illumina.artifacts.2013.12.no_DNA_RNA_spikeins.fa, /global/dna/shared/rqc/ref_databases/qaqc/databases/illumina.artifacts/DNA_spikeins.artifacts.2012.10.fa, /global/dna/shared/rqc/ref_databases/qaqc/databases/phix174_ill.ref.fa, /global/dna/shared/rqc/ref_databases/qaqc/databases/pJET1.2.fasta]
#Query file:	/scratch/tmp/8804357.1.normal_excl.q/TEMP_TRIM_122b58a484b3a2db2b8ae406c4eb62_R1.AAUAP.bbqc.fq.gz,/scratch/tmp/8804357.1.normal_excl.q/TEMP_TRIM_122b58a484b3a2db2b8ae406c4eb62_R2.AAUAP.bbqc.fq.gz
#Not matched reads file:	/scratch/tmp/8804357.1.normal_excl.q/TEMP_FILTER_122b58a484b3a2db2b8ae406c4eb62_R1.AAUAP.bbqc.fq.gz,/scratch/tmp/8804357.1.normal_excl.q/TEMP_FILTER_122b58a484b3a2db2b8ae406c4eb62_R2.AAUAP.bbqc.fq.gz
#Matched reads file:	null
#Output file (duk):	kmerStats.txt
#Output file (stats):	scaffoldStats.txt
#Mer size:	27
#Avg step size:	0.0
#Cut off:	0
#Mask middle:	true
#Quality trim:	12

##REFERENCE STAT##
#Total Reads:	171
#Total Bases:	36311
#Total kmers:	31905
#Total stored kmers:	1523933

## ELAPSED TIME##
# Time:	35.04 seconds

##QUERY FILE STAT##
# Total number of reads:	33139176
# Total number of matched reads:	70
# Match ratio:	0.000002

##P-VALUE##
#Avg number of Kmer for each read:	122

## Histogram of kmer occurance for reads with at least one occurance ##
#NumOcc	NumReads	Percentage
0	33139108	99.9998
27	1	0.0000
77	2	0.0000
124	65	0.0002