QD/SAG JGI SINGLE-CELL QC AND ASSEMBLY REPORT - <PROJECT_ID> <BIOCLASS_NAME>

1) RAW DATA:

LibraryName	NumReads	RunType	ReadType	FileName
LIB	41218	2x147	Illumina Std PE (cassava 1.8)	ZHYY.8454.1.101266.CGTAC.anqdp.bbqc.norm.fastq

a) SPAdes assembly:
Assembly stats of the SPAdes assembly.

Estimated Genome Recovery using Single-copy Gene Analysis:
archaea HMM: 0%
bacteria HMM: 0%

Avg GC Content: 47.25 +/- 5.24%

Largest Contig: 14.8 KB

Main genome scaffold total: 8
Main genome contig total:   8
Main genome scaffold sequence total: 46.4 KB
Main genome contig sequence total:   46.4 KB (->  0.0% gap)
Main genome scaffold N/L50: 3/5.7 KB
Main genome contig N/L50:   3/5.7 KB
Number of scaffolds > 50 KB: 0
% main genome in scaffolds > 50 KB:  0.0%

 Minimum    Number    Number     Total        Total     Scaffold
Scaffold      of        of      Scaffold      Contig     Contig
 Length   Scaffolds  Contigs     Length       Length    Coverage
--------  ---------  -------  -----------  -----------  --------
    All         8          8       46,444       46,444   100.00%
   1 kb         8          8       46,444       46,444   100.00%
 2.5 kb         7          7       44,210       44,210   100.00%
   5 kb         5          5       38,856       38,856   100.00%
  10 kb         1          1       14,786       14,786   100.00%

2) NCBI SCREENING STATS

This step identifies potential contaminants screened by NCBI for submission.

** No potential contaminants found.

3) KEY PIPELINE CMDS:

a) SPAdes assembly step:
SPAdes version: 3.0.0
SPAdes params: -t 8 -m 40 --sc --careful --12

4) WORKFLOW STEPS:
1. Created SPAdes assembly.

5) ASSEMBLERS USED:
SPAdes (v.3.0.0)

6) ASSESSED GENOME PROJECT STANDARD:
Standard Draft

7) RELEASE DATE:
03/24/2015

8) AUTHORS:
For additional information, please contact:
NAME_OF_ANALYST - ANALYST@lbl.gov
Stephan Trong - strong@lbl.gov
Alex Copeland - accopeland@lbl.gov

This file was automatically generated by the jigsaw pipeline software (version 2.4.2).