Command line: /usr/common/jgi/assemblers/spades/3.0.0_1/bin/spades.py -o /global/projectb/scratch/copeland/Projects/2014/20140214-ViralParticle-GAA691/ZHYY/spades --phred-offset 33 -t 8 -m 40 --sc --careful --12 /global/projectb/scratch/copeland/Projects/2014/20140214-ViralParticle-GAA691/ZHYY/ZHYY.8454.1.101266.CGTAC.anqdp.bbqc.norm.fastq

System information:
  SPAdes version: 3.0.0
  Python version: 2.7.4
  OS: Linux-2.6.32-431.46.2.el6.nersc.x86_64-x86_64-with-debian-6.0.6

Output dir: /global/projectb/scratch/copeland/Projects/2014/20140214-ViralParticle-GAA691/ZHYY/spades
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Single-cell mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/global/projectb/scratch/copeland/Projects/2014/20140214-ViralParticle-GAA691/ZHYY/ZHYY.8454.1.101266.CGTAC.anqdp.bbqc.norm.fastq']
      single reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset: 33
  Corrected reads will be compressed (with gzip)
Assembly parameters:
  k: [21, 33, 55]
  MismatchCorrector will be used
  Repeat resolution is enabled
Other parameters:
  Dir for temp files: /global/projectb/scratch/copeland/Projects/2014/20140214-ViralParticle-GAA691/ZHYY/spades/tmp
  Threads: 8
  Memory limit (in Gb): 40