##INPUT PARAMETERS## #Reference file: [/global/dna/shared/rqc/ref_databases/qaqc/databases/illumina.artifacts/Illumina.artifacts.2013.12.no_DNA_RNA_spikeins.fa, /global/dna/shared/rqc/ref_databases/qaqc/databases/illumina.artifacts/DNA_spikeins.artifacts.2012.10.fa, /global/dna/shared/rqc/ref_databases/qaqc/databases/phix174_ill.ref.fa] #Query file: /scratch/tmp/6499544.1.normal_excl.q/TEMP_TRIM_f1d4edb5d1e47cf4381753181d3ca_ZHZB.bbqc.fq.gz #Not matched reads file: /scratch/tmp/6499544.1.normal_excl.q/TEMP_FILTER_f1d4edb5d1e47cf4381753181d3ca_ZHZB.bbqc.fq.gz #Matched reads file: null #Output file (duk): kmerStats.txt #Output file (stats): scaffoldStats.txt #Mer size: 27 #Avg step size: 0.0 #Cut off: 0 #Mask middle: true #Quality trim: 12 ##REFERENCE STAT## #Total Reads: 243 #Total Bases: 39660 #Total kmers: 33396 #Total stored kmers: 1590624 ## ELAPSED TIME## # Time: 43.37 seconds ##QUERY FILE STAT## # Total number of reads: 23355884 # Total number of matched reads: 0 # Match ratio: 0.000000 ##P-VALUE## #Avg number of Kmer for each read: 122 ## Histogram of kmer occurance for reads with at least one occurance ## #NumOcc NumReads Percentage 0 23355884 100.0000