stopAfter = unitigger
unitigger = bogart
utgErrorRate = 0.06 
utgErrorLimit = 4.5

cnsErrorRate = 0.25
cgwErrorRate = 0.25
ovlErrorRate = 0.06

frgMinLen = 500
ovlMinLen = 40
  
merSize=14

merylMemory = 4116
merylThreads = 8

ovlStoreMemory = 4116

# grid info
useGrid = 0
scriptOnGrid = 0
frgCorrOnGrid = 0
ovlCorrOnGrid = 0

sge = -S /bin/bash -sync y -V -q long.q
sgeScript = -pe pe_slots 7
sgeConsensus = -pe pe_slots 1
sgeOverlap = -pe pe_slots 1
sgeFragmentCorrection = -pe pe_slots 2
sgeOverlapCorrection = -pe pe_slots 1

ovlHashBits = 23
ovlHashBlockLength = 250399948
ovlRefBlockSize =  362

ovlThreads = 1
ovlConcurrency = 7
frgCorrThreads = 2
frgCorrBatchSize = 100000
ovlCorrBatchSize = 100000

sgeName = 030527