JGI IMPROVED QUALITY DRAFT QC AND ASSEMBLY REPORT

1) RAW DATA:

LibraryName	NumReads	ReadType	AvgReadLength	FileName
ABPXZ	258,626	PacBio	3338.9	filtered_subreads.fasta

2) PACBIO READ FILTERING STATS:

Raw reads:	790,275 (100%)
Quality and adapter removed reads:	531,649 (67.3%)
Error corrected reads:	14,724 (1.9%)
Total reads remaining:	258,626 (32.7%)

3) NCBI SCREENING STATS

This step identifies potential contaminants screened by NCBI for submission.

** No potential contaminants found.

4) ASSEMBLY STATS:

Assembly stats of the HGAP assembly.

Avg GC Content: 62.87 +/- 10.90%

Largest Contig: 3,129.7 Kbp

Main genome scaffold total:         	134
Main genome contig total:           	134
Main genome scaffold sequence total:	11.004 MB
Main genome contig sequence total:  	11.004 MB  	0.000% gap
Main genome scaffold N/L50:         	2/2.59 MB
Main genome contig N/L50:           	2/2.59 MB
Max scaffold length:                	3.13 MB
Max contig length:                  	3.13 MB
Number of scaffolds > 50 KB:        	10
% main genome in scaffolds > 50 KB: 	96.25%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	           134	           134	    11,004,297	    11,004,297	 100.00%
    500 	           134	           134	    11,004,297	    11,004,297	 100.00%
   1 KB 	           117	           117	    10,990,570	    10,990,570	 100.00%
 2.5 KB 	            54	            54	    10,879,988	    10,879,988	 100.00%
   5 KB 	            18	            18	    10,759,207	    10,759,207	 100.00%
  10 KB 	            15	            15	    10,741,110	    10,741,110	 100.00%
  25 KB 	            14	            14	    10,729,761	    10,729,761	 100.00%
  50 KB 	            10	            10	    10,591,138	    10,591,138	 100.00%
 100 KB 	            10	            10	    10,591,138	    10,591,138	 100.00%
 250 KB 	             6	             6	     9,937,482	     9,937,482	 100.00%
 500 KB 	             4	             4	     9,406,017	     9,406,017	 100.00%
   1 MB 	             4	             4	     9,406,017	     9,406,017	 100.00%
 2.5 MB 	             2	             2	     5,719,563	     5,719,563	 100.00%


5) ASSEMBLERS USED:
HGAP (v.2.3.0,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,)

6) ASSESSED GENOME PROJECT STANDARD:
Improved High-Quality Draft

7) RELEASE DATE:
06/06/2015

8) AUTHORS:
For additional information, please contact:
Alexander Spunde - ayspunde@lbl.gov
Bryce Foster - brycefoster@lbl.gov
Stephan Trong - strong@lbl.gov
Alex Copeland - accopeland@lbl.gov

This file was automatically generated by the hacksaw pipeline software (version 2.3.3).