JGI IMPROVED QUALITY DRAFT QC AND ASSEMBLY REPORT

1) RAW DATA:

LibraryName	NumReads	ReadType	AvgReadLength	FileName
ABPYC	329,690	PacBio	3574.6	filtered_subreads.fasta

2) PACBIO READ FILTERING STATS:

Raw reads:	962,696 (100%)
Quality and adapter removed reads:	633,006 (65.8%)
Error corrected reads:	13,421 (1.4%)
Total reads remaining:	329,690 (34.2%)

3) NCBI SCREENING STATS

This step identifies potential contaminants screened by NCBI for submission.

** No potential contaminants found.

4) ASSEMBLY STATS:

Assembly stats of the HGAP assembly.

Avg GC Content: 59.70 +/- 10.62%

Largest Contig: 6,184.7 Kbp

Main genome scaffold total:         	330
Main genome contig total:           	330
Main genome scaffold sequence total:	10.908 MB
Main genome contig sequence total:  	10.908 MB  	0.000% gap
Main genome scaffold N/L50:         	1/6.185 MB
Main genome contig N/L50:           	1/6.185 MB
Max scaffold length:                	6.185 MB
Max contig length:                  	6.185 MB
Number of scaffolds > 50 KB:        	11
% main genome in scaffolds > 50 KB: 	66.17%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	           330	           330	    10,907,529	    10,907,529	 100.00%
    500 	           330	           330	    10,907,529	    10,907,529	 100.00%
   1 KB 	           319	           319	    10,898,525	    10,898,525	 100.00%
 2.5 KB 	           257	           257	    10,788,733	    10,788,733	 100.00%
   5 KB 	           205	           205	    10,603,506	    10,603,506	 100.00%
  10 KB 	           157	           157	    10,281,891	    10,281,891	 100.00%
  25 KB 	            50	            50	     8,571,635	     8,571,635	 100.00%
  50 KB 	            11	            11	     7,217,513	     7,217,513	 100.00%
 100 KB 	             3	             3	     6,782,017	     6,782,017	 100.00%
 250 KB 	             2	             2	     6,560,905	     6,560,905	 100.00%
 500 KB 	             1	             1	     6,184,675	     6,184,675	 100.00%
   1 MB 	             1	             1	     6,184,675	     6,184,675	 100.00%
 2.5 MB 	             1	             1	     6,184,675	     6,184,675	 100.00%
   5 MB 	             1	             1	     6,184,675	     6,184,675	 100.00%


5) ASSEMBLERS USED:
HGAP (v.2.3.0,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,)

6) ASSESSED GENOME PROJECT STANDARD:
Improved High-Quality Draft

7) RELEASE DATE:
06/13/2015

8) AUTHORS:
For additional information, please contact:
Alexander Spunde - ayspunde@lbl.gov
Bryce Foster - brycefoster@lbl.gov
Stephan Trong - strong@lbl.gov
Alex Copeland - accopeland@lbl.gov

This file was automatically generated by the hacksaw pipeline software (version 2.3.3).