JGI IMPROVED QUALITY DRAFT QC AND ASSEMBLY REPORT

1) RAW DATA:

LibraryName	NumReads	ReadType	AvgReadLength	FileName
ABPYG	330,030	PacBio	3700.2	filtered_subreads.fasta

2) PACBIO READ FILTERING STATS:

Raw reads:	1,001,901 (100%)
Quality and adapter removed reads:	671,871 (67.1%)
Error corrected reads:	12,711 (1.3%)
Total reads remaining:	330,030 (32.9%)

3) NCBI SCREENING STATS

This step identifies potential contaminants screened by NCBI for submission.

** No potential contaminants found.

4) ASSEMBLY STATS:

Assembly stats of the HGAP assembly.

Avg GC Content: 65.28 +/- 6.93%

Largest Contig: 6,183.9 Kbp

Main genome scaffold total:         	178
Main genome contig total:           	178
Main genome scaffold sequence total:	7.628 MB
Main genome contig sequence total:  	7.628 MB  	0.000% gap
Main genome scaffold N/L50:         	1/6.184 MB
Main genome contig N/L50:           	1/6.184 MB
Max scaffold length:                	6.184 MB
Max contig length:                  	6.184 MB
Number of scaffolds > 50 KB:        	7
% main genome in scaffolds > 50 KB: 	91.86%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	           178	           178	     7,628,214	     7,628,214	 100.00%
    500 	           178	           178	     7,628,214	     7,628,214	 100.00%
   1 KB 	           167	           167	     7,619,332	     7,619,332	 100.00%
 2.5 KB 	            96	            96	     7,495,795	     7,495,795	 100.00%
   5 KB 	            29	            29	     7,258,615	     7,258,615	 100.00%
  10 KB 	            10	            10	     7,137,625	     7,137,625	 100.00%
  25 KB 	            10	            10	     7,137,625	     7,137,625	 100.00%
  50 KB 	             7	             7	     7,007,608	     7,007,608	 100.00%
 100 KB 	             3	             3	     6,780,642	     6,780,642	 100.00%
 250 KB 	             2	             2	     6,558,813	     6,558,813	 100.00%
 500 KB 	             1	             1	     6,183,918	     6,183,918	 100.00%
   1 MB 	             1	             1	     6,183,918	     6,183,918	 100.00%
 2.5 MB 	             1	             1	     6,183,918	     6,183,918	 100.00%
   5 MB 	             1	             1	     6,183,918	     6,183,918	 100.00%


5) ASSEMBLERS USED:
HGAP (v.2.3.0,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,)

6) ASSESSED GENOME PROJECT STANDARD:
Improved High-Quality Draft

7) RELEASE DATE:
06/13/2015

8) AUTHORS:
For additional information, please contact:
Alexander Spunde - ayspunde@lbl.gov
Bryce Foster - brycefoster@lbl.gov
Stephan Trong - strong@lbl.gov
Alex Copeland - accopeland@lbl.gov

This file was automatically generated by the hacksaw pipeline software (version 2.3.3).