JGI IMPROVED QUALITY DRAFT QC AND ASSEMBLY REPORT

1) RAW DATA:

LibraryName	NumReads	ReadType	AvgReadLength	FileName
None	208,399	PacBio	3962.0	filtered_subreads.fasta

2) PACBIO READ FILTERING STATS:

Raw reads:	345,350 (100%)
Quality and adapter removed reads:	136,951 (39.7%)
Error corrected reads:	12,453 (3.6%)
Total reads remaining:	208,399 (60.3%)

3) NCBI SCREENING STATS

This step identifies potential contaminants screened by NCBI for submission.

** No potential contaminants found.

4) ASSEMBLY STATS:

Assembly stats of the HGAP assembly.

Avg GC Content: 56.04 +/- 3.36%

Largest Contig: 5,914.9 Kbp

Main genome scaffold total:         	5
Main genome contig total:           	5
Main genome scaffold sequence total:	10.862 MB
Main genome contig sequence total:  	10.862 MB  	0.000% gap
Main genome scaffold N/L50:         	1/5.915 MB
Main genome contig N/L50:           	1/5.915 MB
Main genome scaffold N/L90:         	2/4.747 MB
Main genome contig N/L90:           	2/4.747 MB
Max scaffold length:                	5.915 MB
Max contig length:                  	5.915 MB
Number of scaffolds > 50 KB:        	4
% main genome in scaffolds > 50 KB: 	99.95%


Minimum 	Number        	Number        	Total         	Total         	Scaffold
Scaffold	of            	of            	Scaffold      	Contig        	Contig  
Length  	Scaffolds     	Contigs       	Length        	Length        	Coverage
--------	--------------	--------------	--------------	--------------	--------
    All 	             5	             5	    10,861,897	    10,861,897	 100.00%
   5 KB 	             5	             5	    10,861,897	    10,861,897	 100.00%
  10 KB 	             4	             4	    10,855,925	    10,855,925	 100.00%
  25 KB 	             4	             4	    10,855,925	    10,855,925	 100.00%
  50 KB 	             4	             4	    10,855,925	    10,855,925	 100.00%
 100 KB 	             3	             3	    10,766,148	    10,766,148	 100.00%
 250 KB 	             2	             2	    10,661,871	    10,661,871	 100.00%
 500 KB 	             2	             2	    10,661,871	    10,661,871	 100.00%
   1 MB 	             2	             2	    10,661,871	    10,661,871	 100.00%
 2.5 MB 	             2	             2	    10,661,871	    10,661,871	 100.00%
   5 MB 	             1	             1	     5,914,850	     5,914,850	 100.00%


5) ASSEMBLERS USED:
HGAP (v.2.3.0_p5,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,)

6) ASSESSED GENOME PROJECT STANDARD:
Improved High-Quality Draft

7) RELEASE DATE:
03/18/2017

8) AUTHORS:
For additional information, please contact:
NAME_OF_ANALYST - ANALYST@lbl.gov
Bryce Foster - brycefoster@lbl.gov
Stephan Trong - strong@lbl.gov
Alex Copeland - accopeland@lbl.gov

This file was automatically generated by the hacksaw pipeline software (version 2.3.12).