The public address of this location.
location.txt

Common ribosomal kmers from Silva 132.  Primarily for use in metatranscriptome ribosomal filtering with BBDuk.
Created using bbmap/pipelines/makeRiboKmers.sh
riboKmers.fa.gz

Taxonomic tree, updated regularly.
Created using bbmap/pipelines/fetchTaxonomy.sh
tree.taxtree.gz

All data dependencies of RQCFilter, for use with rqcfilter2.sh outside of JGI.
RQCFilterData.tar

Masked version of mouse reference, for removing mouse contaminant reads.
mouse_masked.fa.gz

Masked version of cat reference, for removing cat contaminant reads.
cat_masked.fa.gz

Masked version of dog reference, for removing dog contaminant reads.
dog_masked.fa.gz

Masked version of human reference, for removing human contaminant reads.
hg19_masked.fa.gz

Masked version of common bacterial contaminants, for removing bacterial contamination from eukaryotes.
fusedEPmasked2.fa.gz

Masked version of common bacterial contaminants, for removing bacterial contamination from bacteria. (This is the same organisms as above, but more heavily masked for sequence shared with with other non-contaminant bacteria)
fusedERPBBmasked2.fa.gz

BBSketches of RefSeq, one sketch per TaxID.  Untar before use.
refseqSketch.tar

BBSketches in protein space of RefSeq prokaryotes, one sketch per TaxID.  Untar before use.
prokProtSketch.tar

BBSketches of nt, one sketch per TaxID.  Untar before use.
ntSketch.tar

BBSketches of Silva, one sketch per sequence.  Untar before use.
silvaSeqSketch.tar

BBSketches of Silva, one sketch per TaxID.  Untar before use.
silvaTaxaSketch.tar