indx fragments id level1 level2 subsystem 0 280.4 si_0000 Amino Acids and Derivatives Alanine, serine, and glycine Alanine_biosynthesis 1 218 si_0001 Amino Acids and Derivatives Alanine, serine, and glycine Glycine_Biosynthesis 2 1021.9 si_0002 Amino Acids and Derivatives Alanine, serine, and glycine Glycine_and_Serine_Utilization 3 402.2 si_0003 Amino Acids and Derivatives Alanine, serine, and glycine Glycine_cleavage_system 4 280.9 si_0004 Amino Acids and Derivatives Alanine, serine, and glycine Serine_Biosynthesis 5 0 si_0005 Amino Acids and Derivatives Arginine; urea cycle, polyamines Anaerobic_Oxidative_Degradation_of_L-Ornithine 6 852.9 si_0006 Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine_Biosynthesis_extended 7 68.4 si_0007 Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine_Deiminase_Pathway 8 1598.8 si_0008 Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine_and_Ornithine_Degradation 9 1086.4 si_0009 Amino Acids and Derivatives Arginine; urea cycle, polyamines Cyanophycin_Metabolism 10 1323.5 si_0010 Amino Acids and Derivatives Arginine; urea cycle, polyamines Polyamine_Metabolism 11 324.4 si_0011 Amino Acids and Derivatives Arginine; urea cycle, polyamines Putrescine_utilization_pathways 12 628.1 si_0012 Amino Acids and Derivatives Arginine; urea cycle, polyamines Urea_decomposition 13 228.5 si_0013 Amino Acids and Derivatives Aromatic amino acids and derivatives Aromatic_amino_acid_degradation 14 411.8 si_0014 Amino Acids and Derivatives Aromatic amino acids and derivatives Aromatic_amino_acid_interconversions_with_aryl_acids 15 0 si_0015 Amino Acids and Derivatives Aromatic amino acids and derivatives Bacilysin_biosynthesis 16 184.9 si_0016 Amino Acids and Derivatives Aromatic amino acids and derivatives Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more. 17 385 si_0017 Amino Acids and Derivatives Aromatic amino acids and derivatives Chorismate_Synthesis 18 576.2 si_0018 Amino Acids and Derivatives Aromatic amino acids and derivatives Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate) 19 148.5 si_0019 Amino Acids and Derivatives Aromatic amino acids and derivatives Indole-pyruvate_oxidoreductase_complex 20 447.2 si_0020 Amino Acids and Derivatives Aromatic amino acids and derivatives Phenylalanine_and_Tyrosine_Branches_from_Chorismate 21 0.9 si_0021 Amino Acids and Derivatives Aromatic amino acids and derivatives Tryptophan_catabolism 22 365.2 si_0022 Amino Acids and Derivatives Aromatic amino acids and derivatives Tryptophan_synthesis 23 1536 si_0023 Amino Acids and Derivatives Branched-chain amino acids Branched-Chain_Amino_Acid_Biosynthesis 24 128.2 si_0024 Amino Acids and Derivatives Branched-chain amino acids Branched_chain_amino_acid_degradation_regulons 25 432.9 si_0025 Amino Acids and Derivatives Branched-chain amino acids HMG_CoA_Synthesis 26 1110.4 si_0026 Amino Acids and Derivatives Branched-chain amino acids Isoleucine_degradation 27 175 si_0027 Amino Acids and Derivatives Branched-chain amino acids Ketoisovalerate_oxidoreductase 28 471.2 si_0028 Amino Acids and Derivatives Branched-chain amino acids Leucine_Biosynthesis 29 471.7 si_0029 Amino Acids and Derivatives Branched-chain amino acids Leucine_Degradation_and_HMG-CoA_Metabolism 30 873.4 si_0030 Amino Acids and Derivatives Branched-chain amino acids Valine_degradation 31 231.1 si_0031 Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation Glutamate_dehydrogenases 32 2544.6 si_0032 Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis 33 117.3 si_0033 Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation Glutamine_synthetases 34 26.8 si_0034 Amino Acids and Derivatives Glutamine, glutamate, aspartate, asparagine; ammonia assimilation Poly-gamma-glutamate_biosynthesis 35 1413.5 si_0035 Amino Acids and Derivatives Histidine Metabolism Histidine_Biosynthesis 36 246.6 si_0036 Amino Acids and Derivatives Histidine Metabolism Histidine_Degradation 37 1469.6 si_0037 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Cysteine_Biosynthesis 38 1344.9 si_0038 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Lysine_Biosynthesis_DAP_Pathway 39 80.2 si_0039 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Lysine_biosynthesis_AAA_pathway_2 40 175.3 si_0040 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Lysine_degradation 41 309.8 si_0041 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Lysine_fermentation 42 2642.1 si_0042 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Methionine_Biosynthesis 43 1160.3 si_0043 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Methionine_Degradation 44 89.7 si_0044 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Methionine_Salvage 45 66.7 si_0045 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Threonine_anaerobic_catabolism_gene_cluster 46 1174.1 si_0046 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Threonine_and_Homoserine_Biosynthesis 47 320.9 si_0047 Amino Acids and Derivatives Lysine, threonine, methionine, and cysteine Threonine_degradation 48 103.9 si_0048 Amino Acids and Derivatives Proline and 4-hydroxyproline A_Hypothetical_Protein_Related_to_Proline_Metabolism 49 365.9 si_0049 Amino Acids and Derivatives Proline and 4-hydroxyproline Proline,_4-hydroxyproline_uptake_and_utilization 50 412.9 si_0050 Amino Acids and Derivatives Proline and 4-hydroxyproline Proline_Synthesis 51 538.4 si_0051 Amino Acids and Derivatives Unclassified amino acids and derivatives Creatine_and_Creatinine_Degradation 52 23.3 si_0052 Amino Acids and Derivatives Unclassified amino acids and derivatives L-2-amino-thiazoline-4-carboxylic_acid-Lcysteine_conversion 53 12 si_0053 Amino Acids and Derivatives Unclassified amino acids and derivatives Phosphonoalanine_utilization 54 62.2 si_0054 Carbohydrates Aminosugars (GlcNAc)2_Catabolic_Operon 55 370.1 si_0055 Carbohydrates Aminosugars Chitin_and_N-acetylglucosamine_utilization 56 1 si_0056 Carbohydrates Aminosugars Fructoselysine_(Amadori_product)_utilization_pathway 57 175.8 si_0057 Carbohydrates Aminosugars N-Acetyl-Galactosamine_and_Galactosamine_Utilization 58 4.6 si_0058 Carbohydrates Aminosugars Neotrehalosadiamine_(NTD)_Biosynthesis_Operon 59 338.9 si_0059 Carbohydrates CO2 fixation CO2_uptake,_carboxysome 60 475 si_0060 Carbohydrates CO2 fixation Calvin-Benson_cycle 61 58.3 si_0061 Carbohydrates CO2 fixation Carboxysome 62 635.5 si_0062 Carbohydrates CO2 fixation Photorespiration_(oxidative_C2_cycle) 63 355.4 si_0063 Carbohydrates Central carbohydrate metabolism Dehydrogenase_complexes 64 248.8 si_0064 Carbohydrates Central carbohydrate metabolism Dihydroxyacetone_kinases 65 695 si_0065 Carbohydrates Central carbohydrate metabolism Entner-Doudoroff_Pathway 66 92.4 si_0066 Carbohydrates Central carbohydrate metabolism Ethylmalonyl-CoA_pathway_of_C2_assimilation 67 364.6 si_0067 Carbohydrates Central carbohydrate metabolism Glycolate,_glyoxylate_interconversions 68 2291.9 si_0068 Carbohydrates Central carbohydrate metabolism Glycolysis_and_Gluconeogenesis 69 308.5 si_0069 Carbohydrates Central carbohydrate metabolism Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes 70 324 si_0070 Carbohydrates Central carbohydrate metabolism Glyoxylate_bypass 71 205.2 si_0071 Carbohydrates Central carbohydrate metabolism Methylglyoxal_Metabolism 72 0 si_0072 Carbohydrates Central carbohydrate metabolism Particulate_methane_monooxygenase_(pMMO) 73 963.3 si_0073 Carbohydrates Central carbohydrate metabolism Pentose_phosphate_pathway 74 29.9 si_0074 Carbohydrates Central carbohydrate metabolism Peripheral_Glucose_Catabolism_Pathways 75 127.8 si_0075 Carbohydrates Central carbohydrate metabolism Pyruvate:ferredoxin_oxidoreductase 76 554.5 si_0076 Carbohydrates Central carbohydrate metabolism Pyruvate_Alanine_Serine_Interconversions 77 894.3 si_0077 Carbohydrates Central carbohydrate metabolism Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP 78 1292.1 si_0078 Carbohydrates Central carbohydrate metabolism Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate 79 2.5 si_0079 Carbohydrates Central carbohydrate metabolism Soluble_methane_monooxygenase_(sMMO) 80 940.6 si_0080 Carbohydrates Central carbohydrate metabolism TCA_Cycle 81 142.6 si_0081 Carbohydrates Di- and oligosaccharides Beta-Glucoside_Metabolism 82 150.5 si_0082 Carbohydrates Di- and oligosaccharides Fructooligosaccharides(FOS)_and_Raffinose_Utilization 83 485.8 si_0083 Carbohydrates Di- and oligosaccharides Lactose_and_Galactose_Uptake_and_Utilization 84 154.2 si_0084 Carbohydrates Di- and oligosaccharides Lactose_utilization 85 652.2 si_0085 Carbohydrates Di- and oligosaccharides Maltose_and_Maltodextrin_Utilization 86 28.6 si_0086 Carbohydrates Di- and oligosaccharides Melibiose_Utilization 87 49.7 si_0087 Carbohydrates Di- and oligosaccharides Sucrose_utilization 88 1.5 si_0088 Carbohydrates Di- and oligosaccharides Sucrose_utilization_Shewanella 89 60.9 si_0089 Carbohydrates Di- and oligosaccharides Trehalose_Biosynthesis 90 65.7 si_0090 Carbohydrates Di- and oligosaccharides Trehalose_Uptake_and_Utilization 91 1.2 si_0091 Carbohydrates Di- and oligosaccharides Unknown_oligosaccharide_utilization_Sde_1396 92 647.9 si_0092 Carbohydrates Fermentation Acetoin,_butanediol_metabolism 93 347.2 si_0093 Carbohydrates Fermentation Acetone_Butanol_Ethanol_Synthesis 94 1825.9 si_0094 Carbohydrates Fermentation Acetyl-CoA_fermentation_to_Butyrate 95 684.3 si_0095 Carbohydrates Fermentation Butanol_Biosynthesis 96 64 si_0096 Carbohydrates Fermentation Fermentations:_Lactate 97 550.7 si_0097 Carbohydrates Fermentation Fermentations:_Mixed_acid 98 68.6 si_0098 Carbohydrates Glycoside hydrolases Predicted_carbohydrate_hydrolases 99 7.8 si_0099 Carbohydrates Monosaccharides 2-Ketogluconate_Utilization 100 503.2 si_0100 Carbohydrates Monosaccharides D-Galacturonate_and_D-Glucuronate_Utilization 101 38.8 si_0101 Carbohydrates Monosaccharides D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization 102 24.2 si_0102 Carbohydrates Monosaccharides D-Tagatose_and_Galactitol_Utilization 103 56.5 si_0103 Carbohydrates Monosaccharides D-allose_utilization 104 158.9 si_0104 Carbohydrates Monosaccharides D-galactarate,_D-glucarate_and_D-glycerate_catabolism 105 40.3 si_0105 Carbohydrates Monosaccharides D-galactonate_catabolism 106 279.5 si_0106 Carbohydrates Monosaccharides D-gluconate_and_ketogluconates_metabolism 107 751.6 si_0107 Carbohydrates Monosaccharides D-ribose_utilization 108 548.4 si_0108 Carbohydrates Monosaccharides Deoxyribose_and_Deoxynucleoside_Catabolism 109 106.4 si_0109 Carbohydrates Monosaccharides Fructose_utilization 110 35.8 si_0110 Carbohydrates Monosaccharides Hexose_Phosphate_Uptake_System 111 161.7 si_0111 Carbohydrates Monosaccharides L-Arabinose_utilization 112 58.5 si_0112 Carbohydrates Monosaccharides L-ascorbate_utilization_(and_related_gene_clusters) 113 14.3 si_0113 Carbohydrates Monosaccharides L-fucose_utilization 114 17.1 si_0114 Carbohydrates Monosaccharides L-fucose_utilization_temp 115 406.7 si_0115 Carbohydrates Monosaccharides L-rhamnose_utilization 116 434.5 si_0116 Carbohydrates Monosaccharides Mannose_Metabolism 117 699.8 si_0117 Carbohydrates Monosaccharides Xylose_utilization 118 0 si_0118 Carbohydrates One-carbon Metabolism Formaldehyde_assimilation:_Ribulose_monophosphate_pathway 119 41.6 si_0119 Carbohydrates One-carbon Metabolism Methanogenesis 120 6 si_0120 Carbohydrates One-carbon Metabolism Methanogenesis_from_methylated_compounds 121 82.9 si_0121 Carbohydrates One-carbon Metabolism One-carbon_metabolism_by_tetrahydropterines 122 2097.4 si_0122 Carbohydrates One-carbon Metabolism Serine-glyoxylate_cycle 123 0 si_0123 Carbohydrates Organic acids 2-methylcitrate_to_2-methylaconitate_metabolism_cluster 124 10.8 si_0124 Carbohydrates Organic acids Alpha-acetolactate_operon 125 194.8 si_0125 Carbohydrates Organic acids Glycerate_metabolism 126 56 si_0126 Carbohydrates Organic acids Isobutyryl-CoA_to_Propionyl-CoA_Module 127 521.7 si_0127 Carbohydrates Organic acids Lactate_utilization 128 8.7 si_0128 Carbohydrates Organic acids Malonate_decarboxylase 129 442.7 si_0129 Carbohydrates Organic acids Methylcitrate_cycle 130 200 si_0130 Carbohydrates Organic acids Propionate-CoA_to_Succinate_Module 131 796.4 si_0131 Carbohydrates Organic acids Propionyl-CoA_to_Succinyl-CoA_Module 132 1.9 si_0132 Carbohydrates Organic acids Tricarballylate_Utilization 133 37 si_0133 Carbohydrates Polysaccharides Alpha-Amylase_locus_in_Streptocococcus 134 0.3 si_0134 Carbohydrates Polysaccharides Cellulosome 135 585.1 si_0135 Carbohydrates Polysaccharides Glycogen_metabolism 136 0 si_0136 Carbohydrates Polysaccharides Unknown_carbohydrate_utilization_containing_Fructose-bisphosphate_aldolase 137 31.6 si_0137 Carbohydrates Polysaccharides Xyloglucan_Utilization 138 11.8 si_0138 Carbohydrates Sugar alcohols Erythritol_utilization 139 77.7 si_0139 Carbohydrates Sugar alcohols Ethanolamine_utilization 140 1437.7 si_0140 Carbohydrates Sugar alcohols Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization 141 46 si_0141 Carbohydrates Sugar alcohols Glycerol_fermenation_to_1,3-propanediol 142 444.7 si_0142 Carbohydrates Sugar alcohols Inositol_catabolism 143 74.7 si_0143 Carbohydrates Sugar alcohols Mannitol_Utilization 144 9.8 si_0144 Carbohydrates Sugar alcohols Propanediol_utilization 145 21 si_0145 Carbohydrates Unclassified carbohydrates Conserved_cluster_around_inner_membrane_protein_gene_yghQ,_probably_involved_in_polysaccharide_biosynthesis 146 27.6 si_0146 Carbohydrates Unclassified carbohydrates Lacto-N-Biose_I_and_Galacto-N-Biose_Metabolic_Pathway 147 659.8 si_0147 Carbohydrates Unclassified carbohydrates Sugar_utilization_in_Thermotogales 148 190.2 si_0148 Carbohydrates Unclassified carbohydrates Unknown_carbohydrate_utilization_(_cluster_Ydj_) 149 22.8 si_0149 Carbohydrates Unclassified carbohydrates Unknown_carbohydrate_utilization_(_cluster_Yeg_) 150 117.8 si_0150 Carbohydrates Unclassified carbohydrates Unknown_sugar_utilization_(cluster_yphABCDEFG) 151 0 si_0151 Carbohydrates Unclassified carbohydrates VC0266 152 11.5 si_0152 Carbohydrates Unclassified carbohydrates beta-glucuronide_utilization 153 970.2 si_0153 Cell Division and Cell Cycle Unclassified cell division and cell cycle Bacterial_Cytoskeleton 154 32.8 si_0154 Cell Division and Cell Cycle Unclassified cell division and cell cycle Control_of_cell_elongation_-_division_cycle_in_Bacilli 155 951.7 si_0155 Cell Division and Cell Cycle Unclassified cell division and cell cycle Cyanobacterial_Circadian_Clock 156 1.6 si_0156 Cell Division and Cell Cycle Unclassified cell division and cell cycle Heterocyst_formation_in_cyanobacteria 157 15 si_0157 Cell Division and Cell Cycle Unclassified cell division and cell cycle Intracellular_septation_in_Enterobacteria 158 733.9 si_0158 Cell Division and Cell Cycle Unclassified cell division and cell cycle Macromolecular_synthesis_operon 159 2.4 si_0159 Cell Division and Cell Cycle Unclassified cell division and cell cycle MukBEF_Chromosome_Condensation 160 431.5 si_0160 Cell Division and Cell Cycle Unclassified cell division and cell cycle Two_cell_division_clusters_relating_to_chromosome_partitioning 161 280.6 si_0161 Cell Division and Cell Cycle Unclassified cell division and cell cycle YgjD_and_YeaZ 162 72 si_0162 Cell Wall and Capsule Capsular and extracellular polysacchrides Alginate_metabolism 163 804.6 si_0163 Cell Wall and Capsule Capsular and extracellular polysacchrides CMP-N-acetylneuraminate_Biosynthesis 164 10.8 si_0164 Cell Wall and Capsule Capsular and extracellular polysacchrides Capsular_Polysaccharide_(CPS)_of_Campylobacter 165 297.1 si_0165 Cell Wall and Capsule Capsular and extracellular polysacchrides Capsular_Polysaccharides_Biosynthesis_and_Assembly 166 385.8 si_0166 Cell Wall and Capsule Capsular and extracellular polysacchrides Capsular_heptose_biosynthesis 167 66 si_0167 Cell Wall and Capsule Capsular and extracellular polysacchrides Capsular_surface_virulence_antigen_loci 168 137.5 si_0168 Cell Wall and Capsule Capsular and extracellular polysacchrides Colanic_acid_biosynthesis 169 286.3 si_0169 Cell Wall and Capsule Capsular and extracellular polysacchrides Exopolysaccharide_Biosynthesis 170 14.3 si_0170 Cell Wall and Capsule Capsular and extracellular polysacchrides Extracellular_Polysaccharide_Biosynthesis_of_Streptococci 171 1200.4 si_0171 Cell Wall and Capsule Capsular and extracellular polysacchrides Legionaminic_Acid_Biosynthesis 172 23.8 si_0172 Cell Wall and Capsule Capsular and extracellular polysacchrides O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter 173 1.2 si_0173 Cell Wall and Capsule Capsular and extracellular polysacchrides Phosphorylcholine_incorporation_in_LPS 174 0.5 si_0174 Cell Wall and Capsule Capsular and extracellular polysacchrides Polysaccharide_deacetylases 175 62.2 si_0175 Cell Wall and Capsule Capsular and extracellular polysacchrides Pseudaminic_Acid_Biosynthesis 176 972.6 si_0176 Cell Wall and Capsule Capsular and extracellular polysacchrides Rhamnose_containing_glycans 177 193.7 si_0177 Cell Wall and Capsule Capsular and extracellular polysacchrides Serotype_determining_Capsular_polysaccharide_biosynthesis_in_Staphylococcus 178 1561.7 si_0178 Cell Wall and Capsule Capsular and extracellular polysacchrides Sialic_Acid_Metabolism 179 379 si_0179 Cell Wall and Capsule Capsular and extracellular polysacchrides Streptococcal_Hyaluronic_Acid_Capsule 180 169.2 si_0180 Cell Wall and Capsule Capsular and extracellular polysacchrides Vibrio_Polysaccharide_(VPS)_Biosynthesis 181 5.1 si_0181 Cell Wall and Capsule Capsular and extracellular polysacchrides Xanthan_Exopolysaccharide_Biosynthesis_and_Export 182 7.8 si_0182 Cell Wall and Capsule Capsular and extracellular polysacchrides YjbEFGH_Locus_Involved_in_Exopolysaccharide_Production 183 591.9 si_0183 Cell Wall and Capsule Capsular and extracellular polysacchrides dTDP-rhamnose_synthesis 184 15 si_0184 Cell Wall and Capsule Cell wall of Mycobacteria mycolic_acid_synthesis 185 10.9 si_0185 Cell Wall and Capsule Gram-Negative cell wall components Core_Oligosaccharide_Glycosylation_in_Pseudomonas 186 85.1 si_0186 Cell Wall and Capsule Gram-Negative cell wall components Inner_membrane_protein_YhjD_and_conserved_cluster_involved_in_LPS_biosynthesis 187 1204.9 si_0187 Cell Wall and Capsule Gram-Negative cell wall components KDO2-Lipid_A_biosynthesis 188 697.7 si_0188 Cell Wall and Capsule Gram-Negative cell wall components LOS_core_oligosaccharide_biosynthesis 189 1935.3 si_0189 Cell Wall and Capsule Gram-Negative cell wall components Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_) 190 50.1 si_0190 Cell Wall and Capsule Gram-Negative cell wall components Lipid_A_modifications 191 100 si_0191 Cell Wall and Capsule Gram-Negative cell wall components Lipopolysaccharide-related_cluster_in_Alphaproteobacteria 192 384.1 si_0192 Cell Wall and Capsule Gram-Negative cell wall components Lipopolysaccharide_assembly 193 364.6 si_0193 Cell Wall and Capsule Gram-Negative cell wall components Lipoprotein_sorting_system 194 155.1 si_0194 Cell Wall and Capsule Gram-Negative cell wall components Major_Outer_Membrane_Proteins 195 84.3 si_0195 Cell Wall and Capsule Gram-Negative cell wall components Outer_membrane 196 26.3 si_0196 Cell Wall and Capsule Gram-Negative cell wall components Perosamine_Synthesis_Vibrio 197 35.8 si_0197 Cell Wall and Capsule Gram-Negative cell wall components Vibrio_Core_Oligosaccharide_Biosynthesis 198 5.6 si_0198 Cell Wall and Capsule Gram-Positive cell wall components Anthrose_Biosynthesis 199 19.1 si_0199 Cell Wall and Capsule Gram-Positive cell wall components D-Alanyl_Lipoteichoic_Acid_Biosynthesis 200 16.3 si_0200 Cell Wall and Capsule Gram-Positive cell wall components Polyglycerolphosphate_lipoteichoic_acid_biosynthesis 201 0 si_0201 Cell Wall and Capsule Gram-Positive cell wall components Sortase 202 335.3 si_0202 Cell Wall and Capsule Gram-Positive cell wall components Teichoic_and_lipoteichoic_acids_biosynthesis 203 631.8 si_0203 Cell Wall and Capsule Gram-Positive cell wall components Teichuronic_acid_biosynthesis 204 573.8 si_0204 Cell Wall and Capsule Unclassified cell wall and capsule Murein_Hydrolases 205 1328.4 si_0205 Cell Wall and Capsule Unclassified cell wall and capsule Peptidoglycan_Biosynthesis 206 31 si_0206 Cell Wall and Capsule Unclassified cell wall and capsule Peptidoglycan_Crosslinking_of_Peptide_Stems 207 253.8 si_0207 Cell Wall and Capsule Unclassified cell wall and capsule Peptidoglycan_biosynthesis--gjo 208 240.1 si_0208 Cell Wall and Capsule Unclassified cell wall and capsule Recycling_of_Peptidoglycan_Amino_Acids 209 7.3 si_0209 Cell Wall and Capsule Unclassified cell wall and capsule Recycling_of_Peptidoglycan_Amino_Sugars 210 296.7 si_0210 Cell Wall and Capsule Unclassified cell wall and capsule UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis 211 356.8 si_0211 Cell Wall and Capsule Unclassified cell wall and capsule YjeE 212 0 si_0212 Cell Wall and Capsule Unclassified cell wall and capsule tRNA-dependent_amino_acid_transfers 213 682.9 si_0213 Clustering-based subsystems Biosynthesis of galactoglycans and related lipopolysacharides CBSS-258594.1.peg.3339 214 0 si_0214 Clustering-based subsystems Biosynthesis of galactoglycans and related lipopolysacharides CBSS-376686.6.peg.291 215 831.7 si_0215 Clustering-based subsystems CRISPRs and associated hypotheticals CBSS-216592.1.peg.3534 216 103.7 si_0216 Clustering-based subsystems Carbohydrates Beta-lactamase_cluster_in_Streptococcus 217 97 si_0217 Clustering-based subsystems Carbohydrates Cluster_Ytf_and_putative_sugar_transporter 218 0 si_0218 Clustering-based subsystems Carbohydrates Predicted_mycobacterial_monooxygenase 219 105.6 si_0219 Clustering-based subsystems Carbohydrates Putative_sugar_ABC_transporter_(ytf_cluster) 220 0 si_0220 Clustering-based subsystems Carotenoid biosynthesis CBSS-320388.3.peg.3759 221 32 si_0221 Clustering-based subsystems Catabolism of an unknown compound CBSS-262316.1.peg.2929 222 53.7 si_0222 Clustering-based subsystems Cell Division CBSS-393130.3.peg.794 223 453.9 si_0223 Clustering-based subsystems Cell Division Cell_Division_Cluster 224 179.2 si_0224 Clustering-based subsystems Chemotaxis, response regulators CBSS-323850.3.peg.3142 225 107.2 si_0225 Clustering-based subsystems Choline bitartrate degradation, putative CBSS-344610.3.peg.2335 226 0 si_0226 Clustering-based subsystems Chromosome Replication SeqA_and_Co-occurring_Genes 227 228.2 si_0227 Clustering-based subsystems Clustering-based subsystems CBSS-262719.3.peg.410 228 11.1 si_0228 Clustering-based subsystems Clustering-based subsystems CBSS-280355.3.peg.2835 229 37.5 si_0229 Clustering-based subsystems Clustering-based subsystems CBSS-292415.3.peg.2341 230 156 si_0230 Clustering-based subsystems Clustering-based subsystems Putative_diaminopropionate_ammonia-lyase_cluster 231 136.7 si_0231 Clustering-based subsystems Clustering-based subsystems Sporulation-related_Hypotheticals 232 344.9 si_0232 Clustering-based subsystems Cytochrome biogenesis CBSS-196164.1.peg.1690 233 254.8 si_0233 Clustering-based subsystems Cytochrome biogenesis CBSS-196164.1.peg.461 234 57.5 si_0234 Clustering-based subsystems D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster CBSS-342610.3.peg.283 235 0 si_0235 Clustering-based subsystems DNA metabolism CBSS-269801.1.peg.2186 236 224.7 si_0236 Clustering-based subsystems DNA polymerase III epsilon cluster CBSS-342610.3.peg.1536 237 834.5 si_0237 Clustering-based subsystems Fatty acid metabolic cluster CBSS-246196.1.peg.364 238 85.2 si_0238 Clustering-based subsystems Flagella protein? CBSS-323098.3.peg.2823 239 4 si_0239 Clustering-based subsystems Hypothetical Related to Dihydroorate Dehydrogenase Hypothetical_Related_to_Dihydroorotate_dehydrogenase 240 2 si_0240 Clustering-based subsystems Hypothetical associated with RecF Hypothetical_Coupled_to_RecF 241 140.8 si_0241 Clustering-based subsystems Hypothetical in Lysine biosynthetic cluster CBSS-323850.3.peg.3269 242 23 si_0242 Clustering-based subsystems Hypothetical lipase related to Phosphatidate metabolism CBSS-316407.3.peg.1371 243 27.2 si_0243 Clustering-based subsystems Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase CBSS-257314.1.peg.488 244 354.1 si_0244 Clustering-based subsystems Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE CBSS-83331.1.peg.3039 245 1.9 si_0245 Clustering-based subsystems Lysine Biosynthesis A_Glutathione-dependent_Thiol_Reductase_Associated_with_a_Step_in_Lysine_Biosynthesis 246 295.3 si_0246 Clustering-based subsystems Lysine, threonine, methionine, and cysteine CBSS-84588.1.peg.1247 247 35.3 si_0247 Clustering-based subsystems Lysine, threonine, methionine, and cysteine YeiH 248 0 si_0248 Clustering-based subsystems Membrane-bound hydrogenase CBSS-69014.3.peg.2094 249 2 si_0249 Clustering-based subsystems Methylamine utilization CBSS-265072.7.peg.546 250 21 si_0250 Clustering-based subsystems Molybdopterin oxidoreductase CBSS-269799.3.peg.2220 251 166.7 si_0251 Clustering-based subsystems Monosaccharides Unspecified_monosaccharide_transport_cluster 252 18.1 si_0252 Clustering-based subsystems Nucleotidyl-phosphate metabolic cluster CBSS-222523.1.peg.1311 253 1.2 si_0253 Clustering-based subsystems Pigment biosynthesis CBSS-176299.3.peg.235 254 310.2 si_0254 Clustering-based subsystems Probably GTP or GMP signaling related CBSS-176299.4.peg.1292 255 4.8 si_0255 Clustering-based subsystems Probably Pyrimidine biosynthesis-related CBSS-306254.1.peg.1508 256 21 si_0256 Clustering-based subsystems Probably Ybbk-related hypothetical membrane proteins CBSS-316057.3.peg.659 257 6.7 si_0257 Clustering-based subsystems Probably organic hydroperoxide resistance related hypothetical protein CBSS-269482.1.peg.1294 258 0 si_0258 Clustering-based subsystems Proteasome related clusters Proteasome_subunit_alpha_archaeal_cluster 259 470.8 si_0259 Clustering-based subsystems Protein export? CBSS-393121.3.peg.2760 260 95.5 si_0260 Clustering-based subsystems Putative GGDEF domain protein related to agglutinin secretion CBSS-323850.3.peg.3284 261 27.6 si_0261 Clustering-based subsystems Putative Isoquinoline 1-oxidoreductase subunit CBSS-314267.3.peg.390 262 218 si_0262 Clustering-based subsystems Putative asociate of RNA polymerase sigma-54 factor rpoN CBSS-316057.3.peg.1308 263 362.2 si_0263 Clustering-based subsystems Putrescine/GABA utilization cluster-temporal,to add to SSs GABA_and_putrescine_metabolism_from_cluters 264 7.6 si_0264 Clustering-based subsystems Pyruvate kinase associated cluster CBSS-288000.5.peg.1793 265 0 si_0265 Clustering-based subsystems Recombination related cluster CBSS-198094.1.peg.4426 266 1 si_0266 Clustering-based subsystems Related to Menaquinone-cytochrome C reductase CBSS-393130.3.peg.129 267 238.1 si_0267 Clustering-based subsystems Ribosomal Protein L28P relates to a set of uncharacterized proteins A_Gram-positive_cluster_that_relates_ribosomal_protein_L28P_to_a_set_of_uncharacterized_proteins 268 188 si_0268 Clustering-based subsystems Ribosome-related cluster A_Gammaproteobacteria_Cluster_Relating_to_Translation 269 45.6 si_0269 Clustering-based subsystems Sarcosine oxidase CBSS-188.1.peg.6170 270 6 si_0270 Clustering-based subsystems Shiga toxin cluster CBSS-194948.1.peg.143 271 82.5 si_0271 Clustering-based subsystems Sulfatases and sulfatase modifying factor 1 (and a hypothetical) Sulfatases_and_sulfatase_modifying_factor_1 272 18.2 si_0272 Clustering-based subsystems Three hypotheticals linked to lipoprotein biosynthesis CBSS-188.1.peg.9880 273 107.3 si_0273 Clustering-based subsystems TldD cluster CBSS-354.1.peg.2917 274 82.6 si_0274 Clustering-based subsystems Translation CBSS-243265.1.peg.198 275 401.7 si_0275 Clustering-based subsystems Translation CBSS-326442.4.peg.1852 276 2674.4 si_0276 Clustering-based subsystems Tricarboxylate transporter CBSS-49338.1.peg.459 277 210.5 si_0277 Clustering-based subsystems Two related proteases CBSS-257314.1.peg.676 278 45.4 si_0278 Clustering-based subsystems Type III secretion system, extended Type_III_secretion_systems,_extended 279 2087.9 si_0279 Clustering-based subsystems Unclassified clustering-based subsystems Bacterial_Cell_Division 280 1132.8 si_0280 Clustering-based subsystems Unclassified clustering-based subsystems Bacterial_RNA-metabolizing_Zn-dependent_hydrolases 281 121.1 si_0281 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-138119.3.peg.2719 282 0.1 si_0282 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-159087.4.peg.2189 283 83.7 si_0283 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-160492.1.peg.550 284 15.2 si_0284 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-176279.3.peg.1262 285 141.2 si_0285 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-176279.3.peg.868 286 80.5 si_0286 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-176280.1.peg.1561 287 15.9 si_0287 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-196620.1.peg.2477 288 14 si_0288 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-214092.1.peg.3450 289 586.3 si_0289 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-224911.1.peg.435 290 160.9 si_0290 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-228410.1.peg.134 291 29.8 si_0291 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-235.1.peg.567 292 89.4 si_0292 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-243277.1.peg.4359 293 123.5 si_0293 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-251221.1.peg.1863 294 28.7 si_0294 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-257314.1.peg.752 295 1.5 si_0295 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-261594.1.peg.2640 296 6 si_0296 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-266117.6.peg.2476 297 101.7 si_0297 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-269801.1.peg.1715 298 33.5 si_0298 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-269801.1.peg.1725 299 133.7 si_0299 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-281090.3.peg.464 300 2.8 si_0300 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-288681.3.peg.1039 301 29.7 si_0301 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-290633.1.peg.1906 302 81.6 si_0302 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-291331.3.peg.3674 303 1367.8 si_0303 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-296591.1.peg.2330 304 382.8 si_0304 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-312309.3.peg.1965 305 48.5 si_0305 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-314269.3.peg.1840 306 127.3 si_0306 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316057.3.peg.3521 307 9.1 si_0307 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316057.3.peg.563 308 29.9 si_0308 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316273.3.peg.227 309 0 si_0309 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316273.3.peg.2378 310 0 si_0310 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316273.3.peg.2709 311 59 si_0311 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316273.3.peg.448 312 14.4 si_0312 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316273.3.peg.922 313 25 si_0313 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316279.3.peg.746 314 20.1 si_0314 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-316407.3.peg.2816 315 71.8 si_0315 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-320372.3.peg.6046 316 111.7 si_0316 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-323097.3.peg.2594 317 299.1 si_0317 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-342610.3.peg.1794 318 209.3 si_0318 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-345072.3.peg.1318 319 284.7 si_0319 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-350688.3.peg.1509 320 2 si_0320 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-370552.3.peg.1240 321 298.8 si_0321 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-393121.3.peg.1913 322 43 si_0322 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-393124.3.peg.2657 323 20.6 si_0323 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-393131.3.peg.612 324 150.8 si_0324 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-393133.3.peg.2787 325 18.2 si_0325 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-562.2.peg.5158_SK3_including 326 234.9 si_0326 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-56780.10.peg.1536 327 50 si_0327 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-630.2.peg.3360 328 13.1 si_0328 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-83332.1.peg.3803 329 37.3 si_0329 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-83333.1.peg.946 330 170.6 si_0330 Clustering-based subsystems Unclassified clustering-based subsystems CBSS-87626.3.peg.3639 331 817.6 si_0331 Clustering-based subsystems Unclassified clustering-based subsystems Cell_division-ribosomal_stress_proteins_cluster 332 8 si_0332 Clustering-based subsystems Unclassified clustering-based subsystems Conserved_cluster_around_acetyltransferase_YpeA_in_Enterobacteria 333 15 si_0333 Clustering-based subsystems Unclassified clustering-based subsystems Conserved_cluster_in_Enterobacteriaceae_downstream_from_YqjA,_a_DedA_family_protein 334 1766.9 si_0334 Clustering-based subsystems Unclassified clustering-based subsystems Conserved_gene_cluster_associated_with_Met-tRNA_formyltransferase 335 53.3 si_0335 Clustering-based subsystems Unclassified clustering-based subsystems EC49-61 336 360.4 si_0336 Clustering-based subsystems Unclassified clustering-based subsystems EC699-706 337 52.4 si_0337 Clustering-based subsystems Unclassified clustering-based subsystems KH_domain_RNA_binding_protein_YlqC 338 45.3 si_0338 Clustering-based subsystems Unclassified clustering-based subsystems LMPTP_YfkJ_cluster 339 157.9 si_0339 Clustering-based subsystems Unclassified clustering-based subsystems LMPTP_YwlE_cluster 340 131.9 si_0340 Clustering-based subsystems Unclassified clustering-based subsystems NusA-TFII_Cluster 341 1.1 si_0341 Clustering-based subsystems Unclassified clustering-based subsystems PA0057_cluster 342 239 si_0342 Clustering-based subsystems Unclassified clustering-based subsystems Putative_hemin_transporter 343 176.5 si_0343 Clustering-based subsystems Unclassified clustering-based subsystems Putative_sulfate_assimilation_cluster 344 11.9 si_0344 Clustering-based subsystems Unclassified clustering-based subsystems Spore_Coat 345 11.9 si_0345 Clustering-based subsystems Unclassified clustering-based subsystems Staphylococcus_aureus_hypothetical_repetitive_gene_loci 346 2 si_0346 Clustering-based subsystems Unclassified clustering-based subsystems USS-DB-1 347 17.6 si_0347 Clustering-based subsystems Unclassified clustering-based subsystems USS-DB-2 348 17 si_0348 Clustering-based subsystems Unclassified clustering-based subsystems USS-DB-4 349 3.4 si_0349 Clustering-based subsystems Unclassified clustering-based subsystems USS-DB-6 350 567 si_0350 Clustering-based subsystems Unclassified clustering-based subsystems USS-DB-7 351 55.9 si_0351 Clustering-based subsystems Unclassified clustering-based subsystems Yfa_cluster 352 40.6 si_0352 Clustering-based subsystems Urate degradation CBSS-205922.3.peg.1809 353 56.1 si_0353 Clustering-based subsystems alpha-proteobacterial cluster of hypotheticals CBSS-52598.3.peg.2843 354 420.6 si_0354 Clustering-based subsystems proteosome related Cluster-based_Subsystem_Grouping_Hypotheticals_-_perhaps_Proteosome_Related 355 39.9 si_0355 Clustering-based subsystems recX and regulatory cluster CBSS-261594.1.peg.788 356 117.4 si_0356 Clustering-based subsystems tRNA sulfuration CBSS-89187.3.peg.2957 357 2001 si_0357 Cofactors, Vitamins, Prosthetic Groups, Pigments Biotin Biotin_biosynthesis 358 468 si_0358 Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme A Coenzyme_A_Biosynthesis 359 12.4 si_0359 Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme B Coenzyme_B_synthesis 360 0 si_0360 Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme F420 Coenzyme_F420_synthesis 361 16 si_0361 Cofactors, Vitamins, Prosthetic Groups, Pigments Coenzyme M coenzyme_M_biosynthesis 362 978.8 si_0362 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines 5-FCL-like_protein 363 1623.5 si_0363 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Folate_Biosynthesis 364 16.8 si_0364 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Methanopterin_biosynthesis2 365 1369.5 si_0365 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Molybdenum_cofactor_biosynthesis 366 3.9 si_0366 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Pterin_biosynthesis 367 72.8 si_0367 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Pterin_carbinolamine_dehydratase 368 0.8 si_0368 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Pterin_metabolism 369 446.6 si_0369 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines Pterin_metabolism_3 370 0 si_0370 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines methanopterin_biosynthesis 371 70 si_0371 Cofactors, Vitamins, Prosthetic Groups, Pigments Folate and pterines p-Aminobenzoyl-Glutamate_Utilization 372 270.2 si_0372 Cofactors, Vitamins, Prosthetic Groups, Pigments Lipoic acid Lipoic_acid_metabolism 373 586.2 si_0373 Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD_and_NADP_cofactor_biosynthesis_global 374 39.9 si_0374 Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD_consumption 375 267.3 si_0375 Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD_regulation 376 4.4 si_0376 Cofactors, Vitamins, Prosthetic Groups, Pigments Pyridoxine Pyridoxin(Vitamin_B6)_Degradation_Pathway 377 446.7 si_0377 Cofactors, Vitamins, Prosthetic Groups, Pigments Pyridoxine Pyridoxin_(Vitamin_B6)_Biosynthesis 378 6.9 si_0378 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Coenzyme_PQQ_synthesis 379 129.2 si_0379 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Menaquinone_Biosynthesis_via_Futalosine_--_gjo 380 793.5 si_0380 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Menaquinone_and_Phylloquinone_Biosynthesis 381 2.6 si_0381 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Plastoquinone_Biosynthesis 382 11.9 si_0382 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Pyrroloquinoline_Quinone_biosynthesis 383 0 si_0383 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Tocopherol_Biosynthesis 384 244.8 si_0384 Cofactors, Vitamins, Prosthetic Groups, Pigments Quinone cofactors Ubiquinone_Biosynthesis 385 138 si_0385 Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD Flavodoxin 386 254.4 si_0386 Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD Riboflavin,_FMN_and_FAD_metabolism 387 91.9 si_0387 Cofactors, Vitamins, Prosthetic Groups, Pigments Riboflavin, FMN, FAD riboflavin_to_FAD 388 0 si_0388 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Bilin_Biosynthesis 389 40 si_0389 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Chlorophyll_Biosynthesis 390 0 si_0390 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Chlorophyll_Degradation 391 630.6 si_0391 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Cobalamin_synthesis 392 1075.8 si_0392 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Coenzyme_B12_biosynthesis 393 694.8 si_0393 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Heme_and_Siroheme_Biosynthesis 394 242.4 si_0394 Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Heme_biosynthesis_orphans 395 48.9 si_0395 Cofactors, Vitamins, Prosthetic Groups, Pigments Unclassified cofactors, vitamins, prosthetic groups, pigments Molybdopterin_cytosine_dinucleotide 396 610.6 si_0396 Cofactors, Vitamins, Prosthetic Groups, Pigments Unclassified cofactors, vitamins, prosthetic groups, pigments Thiamin_biosynthesis 397 921.4 si_0397 DNA Metabolism CRISPs CRISPRs 398 75 si_0398 DNA Metabolism CRISPs CRISP_Cmr_Cluster 399 0 si_0399 DNA Metabolism DNA recombination DNA_recombination,_archaeal 400 667.3 si_0400 DNA Metabolism DNA recombination RuvABC_plus_a_hypothetical 401 40.6 si_0401 DNA Metabolism DNA repair 2-phosphoglycolate_salvage 402 31.5 si_0402 DNA Metabolism DNA repair ATP-dependent_Nuclease 403 1317.9 si_0403 DNA Metabolism DNA repair DNA_Repair_Base_Excision 404 884.3 si_0404 DNA Metabolism DNA repair DNA_repair,_UvrABC_system 405 1984.9 si_0405 DNA Metabolism DNA repair DNA_repair,_bacterial 406 219.1 si_0406 DNA Metabolism DNA repair DNA_repair,_bacterial_DinG_and_relatives 407 194.1 si_0407 DNA Metabolism DNA repair DNA_repair,_bacterial_MutL-MutS_system 408 693.1 si_0408 DNA Metabolism DNA repair DNA_repair,_bacterial_RecBCD_pathway 409 286.1 si_0409 DNA Metabolism DNA repair DNA_repair,_bacterial_RecFOR_pathway 410 29.7 si_0410 DNA Metabolism DNA repair DNA_repair,_bacterial_UmuCD_system 411 398.6 si_0411 DNA Metabolism DNA repair DNA_repair,_bacterial_UvrD_and_related_helicases 412 84.6 si_0412 DNA Metabolism DNA repair DNA_repair,_bacterial_photolyase 413 10.6 si_0413 DNA Metabolism DNA repair Nonhomologous_End-Joining_in_Bacteria 414 98.1 si_0414 DNA Metabolism DNA repair Uracil-DNA_glycosylase 415 1701.5 si_0415 DNA Metabolism DNA replication DNA-replication 416 16 si_0416 DNA Metabolism DNA replication DNA_Helicase_of_Unknown_Function 417 32.7 si_0417 DNA Metabolism DNA replication DNA_replication,_archaeal 418 101.5 si_0418 DNA Metabolism DNA replication DNA_topoisomerases,_Type_I,_ATP-independent 419 958.9 si_0419 DNA Metabolism DNA replication DNA_topoisomerases,_Type_II,_ATP-dependent 420 54.1 si_0420 DNA Metabolism DNA replication Plasmid_replication 421 12.8 si_0421 DNA Metabolism DNA uptake, competence Competence_in_Streptococci 422 223.4 si_0422 DNA Metabolism DNA uptake, competence DNA_processing_cluster 423 114.6 si_0423 DNA Metabolism DNA uptake, competence Gram_Positive_Competence 424 91 si_0424 DNA Metabolism DNA uptake, competence Natural_DNA_Transformation_in_Vibrio 425 11.9 si_0425 DNA Metabolism Unclassified dna metabolism DNA_phosphorothioation 426 376.5 si_0426 DNA Metabolism Unclassified dna metabolism DNA_structural_proteins,_bacterial 427 0 si_0427 DNA Metabolism Unclassified dna metabolism Nucleoid-associated_proteins_in_Bacteria 428 489.6 si_0428 DNA Metabolism Unclassified dna metabolism Restriction-Modification_System 429 345.9 si_0429 DNA Metabolism Unclassified dna metabolism Type_I_Restriction-Modification 430 34.3 si_0430 DNA Metabolism Unclassified dna metabolism YcfH 431 0 si_0431 Dormancy and Sporulation Spore DNA protection Dipicolinate_Synthesis 432 0 si_0432 Dormancy and Sporulation Spore DNA protection Small_acid-soluble_spore_proteins 433 4.3 si_0433 Dormancy and Sporulation Unclassified dormancy and sporulation Bacillus_Sporulation_Killing_Factor_A_Biosynthetic_Cluster 434 0 si_0434 Dormancy and Sporulation Unclassified dormancy and sporulation Bacillus_biofilm_matrix_protein_component_TasA_and_homologs 435 1.2 si_0435 Dormancy and Sporulation Unclassified dormancy and sporulation Exosporium 436 95.1 si_0436 Dormancy and Sporulation Unclassified dormancy and sporulation Persister_Cells 437 0 si_0437 Dormancy and Sporulation Unclassified dormancy and sporulation SpoVS_protein_family 438 10 si_0438 Dormancy and Sporulation Unclassified dormancy and sporulation Spore_Core_Dehydration 439 25.9 si_0439 Dormancy and Sporulation Unclassified dormancy and sporulation Spore_germination 440 4.7 si_0440 Dormancy and Sporulation Unclassified dormancy and sporulation Spore_pigment_biosynthetic_cluster_in_Actinomycetes 441 6.3 si_0441 Dormancy and Sporulation Unclassified dormancy and sporulation Sporulation-associated_proteins_with_broader_functions 442 0.4 si_0442 Dormancy and Sporulation Unclassified dormancy and sporulation Sporulation_Cluster_III_A 443 11.4 si_0443 Dormancy and Sporulation Unclassified dormancy and sporulation Sporulation_draft 444 125.4 si_0444 Dormancy and Sporulation Unclassified dormancy and sporulation Sporulation_gene_orphans 445 219 si_0445 Fatty Acids, Lipids, and Isoprenoids Fatty acids Acyl-CoA_thioesterase_II 446 15.7 si_0446 Fatty Acids, Lipids, and Isoprenoids Fatty acids Carnitine_Metabolism_in_Microorganisms 447 4.1 si_0447 Fatty Acids, Lipids, and Isoprenoids Fatty acids Fatty_Acid_Biosynthesis_FASI 448 2811.7 si_0448 Fatty Acids, Lipids, and Isoprenoids Fatty acids Fatty_Acid_Biosynthesis_FASII 449 1790.6 si_0449 Fatty Acids, Lipids, and Isoprenoids Fatty acids Fatty_acid_degradation_regulons 450 140.8 si_0450 Fatty Acids, Lipids, and Isoprenoids Fatty acids Phospholipid_and_Fatty_acid_biosynthesis_related_cluster 451 60.9 si_0451 Fatty Acids, Lipids, and Isoprenoids Fatty acids Polyunsaturated_Fatty_Acids_synthesis 452 70.5 si_0452 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Acyclic_terpenes_utilization 453 43 si_0453 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Archaeal_lipids 454 181.2 si_0454 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Carotenoids 455 618.1 si_0455 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Isoprenoid_Biosynthesis 456 0 si_0456 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Myxoxanthophyll_biosynthesis_in_Cyanobacteria 457 218.5 si_0457 Fatty Acids, Lipids, and Isoprenoids Isoprenoids Polyprenyl_Diphosphate_Biosynthesis 458 1.3 si_0458 Fatty Acids, Lipids, and Isoprenoids Isoprenoids polyprenyl_synthesis 459 1438.5 si_0459 Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria 460 0 si_0460 Fatty Acids, Lipids, and Isoprenoids Phospholipids Sphingolipid_biosynthesis 461 64.8 si_0461 Fatty Acids, Lipids, and Isoprenoids Triacylglycerols Triacylglycerol_metabolism 462 1 si_0462 Fatty Acids, Lipids, and Isoprenoids Unclassified fatty acids, lipids, and isoprenoids Cholesterol_catabolic_operon_in_Mycobacteria 463 1157.5 si_0463 Fatty Acids, Lipids, and Isoprenoids Unclassified fatty acids, lipids, and isoprenoids Polyhydroxybutyrate_metabolism 464 0 si_0464 Iron acquisition and metabolism Siderophores Alcaligin_Siderophore 465 6.2 si_0465 Iron acquisition and metabolism Siderophores Bacillibactin_Siderophore 466 0 si_0466 Iron acquisition and metabolism Siderophores Iron_siderophore_sensor_&_receptor_system 467 12.7 si_0467 Iron acquisition and metabolism Siderophores Petrobactin-mediated_iron_uptake_system 468 4.3 si_0468 Iron acquisition and metabolism Siderophores Salmochelin-mediated_Iron_Acquisition 469 0.9 si_0469 Iron acquisition and metabolism Siderophores Siderophore_Achromobactin 470 38.6 si_0470 Iron acquisition and metabolism Siderophores Siderophore_Aerobactin 471 0 si_0471 Iron acquisition and metabolism Siderophores Siderophore_Desferrioxamine_E 472 66.4 si_0472 Iron acquisition and metabolism Siderophores Siderophore_Enterobactin 473 33.8 si_0473 Iron acquisition and metabolism Siderophores Siderophore_Pyoverdine 474 0.7 si_0474 Iron acquisition and metabolism Siderophores Siderophore_Staphylobactin 475 0.7 si_0475 Iron acquisition and metabolism Siderophores Siderophore_Yersiniabactin_Biosynthesis 476 1.4 si_0476 Iron acquisition and metabolism Siderophores Siderophore_[Alcaligin-like] 477 125.4 si_0477 Iron acquisition and metabolism Siderophores Siderophore_assembly_kit 478 9.5 si_0478 Iron acquisition and metabolism Siderophores Siderophore_pyochelin 479 7.6 si_0479 Iron acquisition and metabolism Siderophores Vibrioferrin_synthesis 480 14.4 si_0480 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Campylobacter_Iron_Metabolism 481 1.1 si_0481 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Ferrous_iron_transporter_EfeUOB,_low-pH-induced 482 163 si_0482 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Heme,_hemin_uptake_and_utilization_systems_in_GramPositives 483 257.4 si_0483 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Hemin_transport_system 484 17.2 si_0484 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Iron_Scavenging_cluster_in_Thermus 485 280.6 si_0485 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Iron_acquisition_in_Streptococcus 486 43 si_0486 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Iron_acquisition_in_Vibrio 487 145.3 si_0487 Iron acquisition and metabolism Unclassified iron acquisition and metabolism Transport_of_Iron 488 285.3 si_0488 Membrane Transport ABC transporters ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1) 489 4380 si_0489 Membrane Transport ABC transporters ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1) 490 2270.4 si_0490 Membrane Transport ABC transporters ABC_transporter_dipeptide_(TC_3.A.1.5.2) 491 19.2 si_0491 Membrane Transport ABC transporters ABC_transporter_of_unknown_substrate_X 492 2012.6 si_0492 Membrane Transport ABC transporters ABC_transporter_oligopeptide_(TC_3.A.1.5.1) 493 63.8 si_0493 Membrane Transport ABC transporters ABC_transporter_peptide_(TC_3.A.1.5.5) 494 311.7 si_0494 Membrane Transport ABC transporters ABC_transporter_tungstate_(TC_3.A.1.6.2) 495 185.9 si_0495 Membrane Transport ABC transporters ATP-dependent_efflux_pump_transporter_Ybh 496 174.9 si_0496 Membrane Transport ABC transporters Periplasmic-Binding-Protein-Dependent_Transport_System_for_α-Glucosides 497 1.4 si_0497 Membrane Transport Protein and nucleoprotein secretion system, Type IV Dot-Icm_type_IV_secretion_system 498 208.9 si_0498 Membrane Transport Protein and nucleoprotein secretion system, Type IV Mannose-sensitive_hemagglutinin_type_4_pilus 499 28.9 si_0499 Membrane Transport Protein and nucleoprotein secretion system, Type IV Toxin_co-regulated_pilus 500 8.4 si_0500 Membrane Transport Protein and nucleoprotein secretion system, Type IV Type_4_conjugative_transfer_system,_IncI1_type 501 1568.5 si_0501 Membrane Transport Protein and nucleoprotein secretion system, Type IV Type_IV_pilus 502 91.3 si_0502 Membrane Transport Protein and nucleoprotein secretion system, Type IV pVir_Plasmid_of_Campylobacter 503 493.8 si_0503 Membrane Transport Protein secretion system, Type II General_Secretion_Pathway 504 559.4 si_0504 Membrane Transport Protein secretion system, Type II Widespread_colonization_island 505 18.3 si_0505 Membrane Transport Protein secretion system, Type III Type_III_secretion_system 506 34.7 si_0506 Membrane Transport Protein secretion system, Type III Type_III_secretion_system_orphans 507 719.5 si_0507 Membrane Transport Protein secretion system, Type VI Type_VI_secretion_systems 508 42 si_0508 Membrane Transport Protein secretion system, Type VII (Chaperone/Usher pathway, CU) Colonization_factor_antigen_I_fimbriae 509 9.7 si_0509 Membrane Transport Protein secretion system, Type VII (Chaperone/Usher pathway, CU) The_fimbrial_Sfm_cluster 510 2 si_0510 Membrane Transport Protein secretion system, Type VII (Chaperone/Usher pathway, CU) The_fimbrial_Stf_cluster 511 2 si_0511 Membrane Transport Protein secretion system, Type VII (Chaperone/Usher pathway, CU) The_usher_protein_HtrE_fimbrial_cluster 512 7 si_0512 Membrane Transport Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) Curli_production 513 57.6 si_0513 Membrane Transport Protein translocation across cytoplasmic membrane ESAT-6_proteins_secretion_system_in_Actinobacteria 514 0.2 si_0514 Membrane Transport Protein translocation across cytoplasmic membrane ESAT-6_proteins_secretion_system_in_Firmicutes 515 335.2 si_0515 Membrane Transport Protein translocation across cytoplasmic membrane HtrA_and_Sec_secretion 516 17.7 si_0516 Membrane Transport Protein translocation across cytoplasmic membrane SecY2-SecA2_Specialized_Transport_System 517 395.2 si_0517 Membrane Transport Protein translocation across cytoplasmic membrane Twin-arginine_translocation_system 518 1.8 si_0518 Membrane Transport Sugar Phosphotransferase Systems, PTS Fructose_and_Mannose_Inducible_PTS 519 2.5 si_0519 Membrane Transport Sugar Phosphotransferase Systems, PTS Galactose-inducible_PTS 520 1.6 si_0520 Membrane Transport Sugar Phosphotransferase Systems, PTS Sucrose-specific_PTS 521 39.6 si_0521 Membrane Transport Unclassified membrane transport Agrobacterium_opine_transport 522 8.1 si_0522 Membrane Transport Unclassified membrane transport Choline_Transport 523 7.4 si_0523 Membrane Transport Unclassified membrane transport Citrate_Utilization_System_(CitAB,_CitH,_and_tctABC) 524 446.2 si_0524 Membrane Transport Unclassified membrane transport ECF_class_transporters 525 17.9 si_0525 Membrane Transport Unclassified membrane transport Phosphoglycerate_transport_system 526 744.1 si_0526 Membrane Transport Unclassified membrane transport Ton_and_Tol_transport_systems 527 74.2 si_0527 Membrane Transport Unclassified membrane transport Transport_of_Manganese 528 247.4 si_0528 Membrane Transport Unclassified membrane transport Transport_of_Molybdenum 529 407.4 si_0529 Membrane Transport Unclassified membrane transport Transport_of_Nickel_and_Cobalt 530 502.2 si_0530 Membrane Transport Unclassified membrane transport Transport_of_Zinc 531 19.3 si_0531 Membrane Transport Uni- Sym- and Antiporters Na(+)_H(+)_antiporter 532 13.8 si_0532 Membrane Transport Uni- Sym- and Antiporters Proton-dependent_Peptide_Transporters 533 468.4 si_0533 Membrane Transport Uni- Sym- and Antiporters Sodium_Hydrogen_Antiporter 534 333.4 si_0534 Metabolism of Aromatic Compounds Anaerobic degradation of aromatic compounds Anaerobic_benzoate_metabolism 535 0 si_0535 Metabolism of Aromatic Compounds Anaerobic degradation of aromatic compounds Hydroxyaromatic_decarboxylase_family 536 35.3 si_0536 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates 4-Hydroxyphenylacetic_acid_catabolic_pathway 537 78.1 si_0537 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates Catechol_branch_of_beta-ketoadipate_pathway 538 31 si_0538 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates Central_meta-cleavage_pathway_of_aromatic_compound_degradation 539 75.9 si_0539 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates Homogentisate_pathway_of_aromatic_compound_degradation 540 27.6 si_0540 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates N-heterocyclic_aromatic_compound_degradation 541 82.7 si_0541 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates Protocatechuate_branch_of_beta-ketoadipate_pathway 542 79.1 si_0542 Metabolism of Aromatic Compounds Metabolism of central aromatic intermediates Salicylate_and_gentisate_catabolism 543 69.4 si_0543 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Benzoate_catabolism 544 62.4 si_0544 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Benzoate_degradation 545 11.8 si_0545 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Biphenyl_Degradation 546 79.3 si_0546 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Chloroaromatic_degradation_pathway 547 2.6 si_0547 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Chlorobenzoate_degradation 548 5.8 si_0548 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Naphtalene_and_antracene_degradation 549 111.4 si_0549 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Phenol_hydroxylase 550 13.9 si_0550 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Phenylpropanoid_compound_degradation 551 34.9 si_0551 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Quinate_degradation 552 41.9 si_0552 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Salicylate_ester_degradation 553 40.1 si_0553 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds Toluene_degradation 554 600 si_0554 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds n-Phenylalkanoic_acid_degradation 555 8.6 si_0555 Metabolism of Aromatic Compounds Peripheral pathways for catabolism of aromatic compounds p-Hydroxybenzoate_degradation 556 146 si_0556 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Aromatic_Amin_Catabolism 557 362.3 si_0557 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Benzoate_transport_and_degradation_cluster 558 29 si_0558 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Cresol_degradation 559 37.6 si_0559 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Gentisare_degradation 560 74.8 si_0560 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Phenylacetyl-CoA_catabolic_pathway_(core) 561 0 si_0561 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds Toluene_4-monooxygenase_(T4MO) 562 1.7 si_0562 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds carbazol_degradation_cluster 563 12.5 si_0563 Metabolism of Aromatic Compounds Unclassified metabolism of aromatic compounds p-cymene_degradation 564 73.6 si_0564 Miscellaneous Plant-Prokaryote DOE project At2g33980_At1g28960 565 250.6 si_0565 Miscellaneous Plant-Prokaryote DOE project At3g21300 566 506.4 si_0566 Miscellaneous Plant-Prokaryote DOE project COG2363 567 85.4 si_0567 Miscellaneous Plant-Prokaryote DOE project Conserved_gene_cluster_possibly_involved_in_RNA_metabolism 568 1652 si_0568 Miscellaneous Plant-Prokaryote DOE project Iojap 569 134.4 si_0569 Miscellaneous Plant-Prokaryote DOE project Synechocystis_experimental 570 1.3 si_0570 Miscellaneous Unclassified miscellaneous Archease 571 23.8 si_0571 Miscellaneous Unclassified miscellaneous Archease2 572 189.5 si_0572 Miscellaneous Unclassified miscellaneous Broadly_distributed_proteins_not_in_subsystems 573 0 si_0573 Miscellaneous Unclassified miscellaneous Luciferases 574 0 si_0574 Miscellaneous Unclassified miscellaneous Magnetosome_Biomineralization_and_Function 575 91.8 si_0575 Miscellaneous Unclassified miscellaneous Muconate_lactonizing_enzyme_family 576 95 si_0576 Miscellaneous Unclassified miscellaneous YaaA 577 326.9 si_0577 Miscellaneous Unclassified miscellaneous YbbK 578 1284.9 si_0578 Miscellaneous Unclassified miscellaneous ZZ_gjo_need_homes 579 19 si_0579 Motility and Chemotaxis Flagellar motility in Prokaryota Additional_flagellar_genes_in_Vibrionales 580 6.9 si_0580 Motility and Chemotaxis Flagellar motility in Prokaryota Archaeal_Flagellum 581 1663.2 si_0581 Motility and Chemotaxis Flagellar motility in Prokaryota Flagellar_motility 582 2862 si_0582 Motility and Chemotaxis Flagellar motility in Prokaryota Flagellum 583 88.1 si_0583 Motility and Chemotaxis Flagellar motility in Prokaryota Flagellum_in_Campylobacter 584 9.2 si_0584 Motility and Chemotaxis Social motility and nonflagellar swimming in bacteria Control_of_Swarming_in_Vibrio_and_Shewanella_species 585 2.9 si_0585 Motility and Chemotaxis Social motility and nonflagellar swimming in bacteria Rhamnolipids_in_Pseudomonas 586 2417.3 si_0586 Motility and Chemotaxis Unclassified motility and chemotaxis Bacterial_Chemotaxis 587 41.6 si_0587 Nitrogen Metabolism Unclassified nitrogen metabolism Allantoin_Utilization 588 11.3 si_0588 Nitrogen Metabolism Unclassified nitrogen metabolism Amidase_clustered_with_urea_and_nitrile_hydratase_functions 589 2008.7 si_0589 Nitrogen Metabolism Unclassified nitrogen metabolism Ammonia_assimilation 590 74.6 si_0590 Nitrogen Metabolism Unclassified nitrogen metabolism Cyanate_hydrolysis 591 98.1 si_0591 Nitrogen Metabolism Unclassified nitrogen metabolism Denitrification 592 34.3 si_0592 Nitrogen Metabolism Unclassified nitrogen metabolism Dissimilatory_nitrite_reductase 593 453 si_0593 Nitrogen Metabolism Unclassified nitrogen metabolism Nitrate_and_nitrite_ammonification 594 65.1 si_0594 Nitrogen Metabolism Unclassified nitrogen metabolism Nitric_oxide_synthase 595 634.3 si_0595 Nitrogen Metabolism Unclassified nitrogen metabolism Nitrogen_fixation 596 854.9 si_0596 Nitrogen Metabolism Unclassified nitrogen metabolism Nitrosative_stress 597 97.6 si_0597 Nucleosides and Nucleotides Detoxification Housecleaning_nucleoside_triphosphate_pyrophosphatases 598 99.7 si_0598 Nucleosides and Nucleotides Detoxification Nucleoside_triphosphate_pyrophosphohydrolase_MazG 599 264.4 si_0599 Nucleosides and Nucleotides Detoxification Nudix_proteins_(nucleoside_triphosphate_hydrolases) 600 1906.4 si_0600 Nucleosides and Nucleotides Purines De_Novo_Purine_Biosynthesis 601 342.8 si_0601 Nucleosides and Nucleotides Purines Purine_Utilization 602 2651.9 si_0602 Nucleosides and Nucleotides Purines Purine_conversions 603 7.8 si_0603 Nucleosides and Nucleotides Purines Purine_nucleotide_synthesis_regulator 604 32.9 si_0604 Nucleosides and Nucleotides Purines Xanthine_Metabolism_in_Bacteria 605 19.1 si_0605 Nucleosides and Nucleotides Purines Xanthosine_utilization_(xap_region) 606 1288.7 si_0606 Nucleosides and Nucleotides Pyrimidines De_Novo_Pyrimidine_Synthesis 607 36 si_0607 Nucleosides and Nucleotides Pyrimidines Novel_non-oxidative_pathway_of_Uracil_catabolism 608 227.1 si_0608 Nucleosides and Nucleotides Pyrimidines Pyrimidine_utilization 609 1634.3 si_0609 Nucleosides and Nucleotides Pyrimidines pyrimidine_conversions 610 0 si_0610 Nucleosides and Nucleotides Unclassified nucleosides and nucleotides AMP_to_3-phosphoglycerate 611 5 si_0611 Nucleosides and Nucleotides Unclassified nucleosides and nucleotides Adenosyl_nucleosidases 612 484.5 si_0612 Nucleosides and Nucleotides Unclassified nucleosides and nucleotides Hydantoin_metabolism 613 10.8 si_0613 Nucleosides and Nucleotides Unclassified nucleosides and nucleotides Pseudouridine_Metabolism 614 1808.1 si_0614 Nucleosides and Nucleotides Unclassified nucleosides and nucleotides Ribonucleotide_reduction 615 8 si_0615 Phages, Prophages, Transposable elements Bacteriophage integration/excision/lysogeny Phage_integration_and_excision 616 0 si_0616 Phages, Prophages, Transposable elements Bacteriophage structural proteins Phage_capsid_proteins 617 3.5 si_0617 Phages, Prophages, Transposable elements Superinfection Exclusion Phage_Dual_Exonuclease_Exclusion 618 0 si_0618 Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Listeria_Pathogenicity_Island_LIPI-1_extended 619 141.5 si_0619 Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Staphylococcal_pathogenicity_islands_SaPI 620 30.8 si_0620 Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Vibrio_pathogenicity_island 621 0 si_0621 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Listeria_phi-A118-like_prophages 622 0 si_0622 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_baseplate_proteins 623 0 si_0623 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_neck_proteins 624 3 si_0624 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_nin_genes_-_N-independent_survival 625 3.7 si_0625 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_packaging_machinery 626 60.6 si_0626 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_tail_fiber_proteins 627 46.9 si_0627 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage_tail_proteins_2 628 0 si_0628 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Prophage-encoded_Rst_operon 629 0 si_0629 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Prophage_lysogenic_conversion_modules 630 193.3 si_0630 Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Staphylococcal_phi-Mu50B-like_prophages 631 61.7 si_0631 Phages, Prophages, Transposable elements, Plasmids Plasmid related functions Plasmid-encoded_T-DNA_transfer 632 0 si_0632 Phages, Prophages, Transposable elements, Plasmids Plasmid related functions Rolling-circle_replication 633 7269.8 si_0633 Phages, Prophages, Transposable elements, Plasmids Transposable elements CBSS-203122.12.peg.188 634 4.4 si_0634 Phages, Prophages, Transposable elements, Plasmids Transposable elements Conjugative_transposon,_Bacteroidales 635 0 si_0635 Phages, Prophages, Transposable elements, Plasmids Transposable elements Tn552 636 169 si_0636 Phages, Prophages, Transposable elements, Plasmids Unclassified phages, prophages, transposable elements, plasmids Integrons 637 75.8 si_0637 Phosphorus Metabolism Unclassified phosphorus metabolism Alkylphosphonate_utilization 638 823.4 si_0638 Phosphorus Metabolism Unclassified phosphorus metabolism High_affinity_phosphate_transporter_and_control_of_PHO_regulon 639 115.2 si_0639 Phosphorus Metabolism Unclassified phosphorus metabolism P_uptake_(cyanobacteria) 640 1898.6 si_0640 Phosphorus Metabolism Unclassified phosphorus metabolism Phosphate_metabolism 641 16 si_0641 Phosphorus Metabolism Unclassified phosphorus metabolism Phosphoenolpyruvate_phosphomutase 642 37.3 si_0642 Phosphorus Metabolism Unclassified phosphorus metabolism Phosphonate_metabolism 643 5.4 si_0643 Photosynthesis Electron transport and photophosphorylation Photosystem_I 644 0 si_0644 Photosynthesis Electron transport and photophosphorylation Photosystem_I-type_photosynthetic_reaction_center 645 0 si_0645 Photosynthesis Electron transport and photophosphorylation Photosystem_II 646 0 si_0646 Photosynthesis Electron transport and photophosphorylation Photosystem_II-type_photosynthetic_reaction_center 647 0.4 si_0647 Photosynthesis Light-harvesting complexes Bacterial_light-harvesting_proteins 648 0.1 si_0648 Photosynthesis Light-harvesting complexes Chlorosome 649 0 si_0649 Photosynthesis Light-harvesting complexes Phycobilisome 650 0 si_0650 Photosynthesis Unclassified photosynthesis Bacteriorhodopsin 651 14.7 si_0651 Photosynthesis Unclassified photosynthesis Proteorhodopsin 652 250.7 si_0652 Potassium metabolism Unclassified potassium metabolism Glutathione-regulated_potassium-efflux_system_and_associated_functions 653 0.3 si_0653 Potassium metabolism Unclassified potassium metabolism Hyperosmotic_potassium_uptake 654 2252.6 si_0654 Potassium metabolism Unclassified potassium metabolism Potassium_homeostasis 655 7.8 si_0655 Potassium metabolism Unclassified potassium metabolism pH_adaptation_potassium_efflux_system 656 0 si_0656 Protein Metabolism Protein biosynthesis Nucleolar_protein_complex 657 50.5 si_0657 Protein Metabolism Protein biosynthesis Programmed_frameshift 658 10 si_0658 Protein Metabolism Protein biosynthesis Pyrrolysine 659 0 si_0659 Protein Metabolism Protein biosynthesis Ribosomal_protein_paralogs 660 1743.1 si_0660 Protein Metabolism Protein biosynthesis Ribosome_LSU_bacterial 661 29.9 si_0661 Protein Metabolism Protein biosynthesis Ribosome_LSU_eukaryotic_and_archaeal 662 1813 si_0662 Protein Metabolism Protein biosynthesis Ribosome_SSU_bacterial 663 0.1 si_0663 Protein Metabolism Protein biosynthesis Ribosome_SSU_eukaryotic_and_archaeal 664 2 si_0664 Protein Metabolism Protein biosynthesis Ribosome_activity_modulation 665 236.6 si_0665 Protein Metabolism Protein biosynthesis Ribosome_biogenesis_bacterial 666 28.3 si_0666 Protein Metabolism Protein biosynthesis Trans-translation_by_stalled_ribosomes 667 188.4 si_0667 Protein Metabolism Protein biosynthesis Translation_elongation_factor_G_family 668 502.7 si_0668 Protein Metabolism Protein biosynthesis Translation_elongation_factors_bacterial 669 16.7 si_0669 Protein Metabolism Protein biosynthesis Translation_elongation_factors_eukaryotic_and_archaeal 670 359.9 si_0670 Protein Metabolism Protein biosynthesis Translation_initiation_factors_bacterial 671 13.4 si_0671 Protein Metabolism Protein biosynthesis Translation_initiation_factors_eukaryotic_and_archaeal 672 745.9 si_0672 Protein Metabolism Protein biosynthesis Translation_termination_factors_bacterial 673 1147.5 si_0673 Protein Metabolism Protein biosynthesis Universal_GTPases 674 84.7 si_0674 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Ala 675 155 si_0675 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Arg 676 460.4 si_0676 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Asp_and_Asn 677 62.5 si_0677 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Cys 678 602.2 si_0678 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Glu_and_Gln 679 258 si_0679 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Gly 680 51 si_0680 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_His 681 550.1 si_0681 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Ile 682 360.7 si_0682 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Leu 683 332.4 si_0683 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Lys 684 161.2 si_0684 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Met 685 175.9 si_0685 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Phe 686 145 si_0686 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Pro 687 8 si_0687 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Pyr 688 34 si_0688 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Ser 689 141 si_0689 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Thr 690 163 si_0690 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Trp 691 110 si_0691 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Tyr 692 552.9 si_0692 Protein Metabolism Protein biosynthesis tRNA_aminoacylation,_Val 693 348.3 si_0693 Protein Metabolism Protein degradation Aminopeptidases_(EC_3.4.11.-) 694 30.3 si_0694 Protein Metabolism Protein degradation Dipeptidases_(EC_3.4.13.-) 695 45.5 si_0695 Protein Metabolism Protein degradation Metallocarboxypeptidases_(EC_3.4.17.-) 696 13.8 si_0696 Protein Metabolism Protein degradation Metalloendopeptidases_(EC_3.4.24.-) 697 2 si_0697 Protein Metabolism Protein degradation Omega_peptidases_(EC_3.4.19.-) 698 34.2 si_0698 Protein Metabolism Protein degradation Proteasome_archaeal 699 1310.5 si_0699 Protein Metabolism Protein degradation Proteasome_bacterial 700 220.5 si_0700 Protein Metabolism Protein degradation Protein_degradation 701 1780.5 si_0701 Protein Metabolism Protein degradation Proteolysis_in_bacteria,_ATP-dependent 702 42.9 si_0702 Protein Metabolism Protein degradation Putative_TldE-TldD_proteolytic_complex 703 2 si_0703 Protein Metabolism Protein degradation Serine_endopeptidase_(EC_3.4.21.-) 704 432.9 si_0704 Protein Metabolism Protein folding GroEL_GroES 705 167.2 si_0705 Protein Metabolism Protein folding Peptidyl-prolyl_cis-trans_isomerase 706 53.4 si_0706 Protein Metabolism Protein folding Periplasmic_disulfide_interchange 707 1419.1 si_0707 Protein Metabolism Protein folding Protein_chaperones 708 2.4 si_0708 Protein Metabolism Protein folding Thermosome,_archaeal 709 542.3 si_0709 Protein Metabolism Protein processing and modification Inteins 710 196.2 si_0710 Protein Metabolism Protein processing and modification Lipoprotein_Biosynthesis 711 1655.2 si_0711 Protein Metabolism Protein processing and modification N-linked_Glycosylation_in_Bacteria 712 177.1 si_0712 Protein Metabolism Protein processing and modification Peptide_methionine_sulfoxide_reductase 713 21.8 si_0713 Protein Metabolism Protein processing and modification Protein_Acetylation_and_Deacetylation_in_Bacteria 714 182.4 si_0714 Protein Metabolism Protein processing and modification Ribosomal_protein_S12p_Asp_methylthiotransferase 715 79.8 si_0715 Protein Metabolism Protein processing and modification Ribosomal_protein_S5p_acylation 716 169.7 si_0716 Protein Metabolism Protein processing and modification Signal_peptidase 717 1 si_0717 Protein Metabolism Protein processing and modification Ubiquitin-like_archaeal_modifier_proteins_(SAMPs) 718 36.5 si_0718 Protein Metabolism Secretion Protein_secretion_by_ABC-type_exporters 719 81.4 si_0719 Protein Metabolism Selenoproteins Glycine_reductase,_sarcosine_reductase_and_betaine_reductase 720 830.4 si_0720 Protein Metabolism Selenoproteins Selenocysteine_metabolism 721 73 si_0721 Protein Metabolism Selenoproteins Selenoprotein_O 722 475.1 si_0722 RNA Metabolism RNA processing and modification ATP-dependent_RNA_helicases,_bacterial 723 173.9 si_0723 RNA Metabolism RNA processing and modification Methylthiotransferases 724 123.8 si_0724 RNA Metabolism RNA processing and modification Polyadenylation_bacterial 725 899.7 si_0725 RNA Metabolism RNA processing and modification Queuosine-Archaeosine_Biosynthesis 726 167.1 si_0726 RNA Metabolism RNA processing and modification RNA_3'-terminal_phosphate_cyclase 727 220.7 si_0727 RNA Metabolism RNA processing and modification RNA_processing_and_degradation,_bacterial 728 3 si_0728 RNA Metabolism RNA processing and modification RNA_processing_orphans 729 113.7 si_0729 RNA Metabolism RNA processing and modification RNA_pseudouridine_syntheses 730 101.3 si_0730 RNA Metabolism RNA processing and modification Ribonuclease_H 731 0 si_0731 RNA Metabolism RNA processing and modification Ribonuclease_P_archaeal_and_eukaryal 732 62.5 si_0732 RNA Metabolism RNA processing and modification Ribosome_biogenesis_archaeal 733 73.9 si_0733 RNA Metabolism RNA processing and modification Wyeosine-MimG_Biosynthesis 734 395 si_0734 RNA Metabolism RNA processing and modification YrdC-YciO 735 0 si_0735 RNA Metabolism RNA processing and modification eukaryotic_rRNA_modification_and_related_functions 736 15.8 si_0736 RNA Metabolism RNA processing and modification rRNA_modification_Archaea 737 234.7 si_0737 RNA Metabolism RNA processing and modification rRNA_modification_Bacteria 738 1339.5 si_0738 RNA Metabolism RNA processing and modification tRNA_modification_Archaea 739 870 si_0739 RNA Metabolism RNA processing and modification tRNA_modification_Bacteria 740 126.3 si_0740 RNA Metabolism RNA processing and modification tRNA_nucleotidyltransferase 741 409.7 si_0741 RNA Metabolism RNA processing and modification tRNA_processing 742 0 si_0742 RNA Metabolism RNA processing and modification tRNA_splicing 743 0 si_0743 RNA Metabolism Transcription RNA_polymerase_III 744 0.7 si_0744 RNA Metabolism Transcription RNA_polymerase_archaeal 745 0 si_0745 RNA Metabolism Transcription RNA_polymerase_archaeal_initiation_factors 746 811.4 si_0746 RNA Metabolism Transcription RNA_polymerase_bacterial 747 7.5 si_0747 RNA Metabolism Transcription Rrf2_family_transcriptional_regulators 748 0.3 si_0748 RNA Metabolism Transcription Transcription_elongation_factors,_archaeal 749 350 si_0749 RNA Metabolism Transcription Transcription_factors_bacterial 750 17.4 si_0750 RNA Metabolism Transcription Transcription_factors_cyanobacterial_RpoD-like_sigma_factors 751 334.1 si_0751 RNA Metabolism Transcription Transcription_initiation,_bacterial_sigma_factors 752 417 si_0752 RNA Metabolism Unclassified rna metabolism Group_II_intron-associated_genes 753 3 si_0753 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems A_toxin-antitoxin_module_cotranscribed_with_DinB 754 0 si_0754 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Bacterial_Caspases 755 0 si_0755 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Fratricide_in_Streptococcus 756 6 si_0756 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems MazEF_toxin-antitoxing_(programmed_cell_death)_system 757 155.9 si_0757 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Murein_hydrolase_regulation_and_cell_death 758 414 si_0758 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Phd-Doc,_YdcE-YdcD_toxin-antitoxin_(programmed_cell_death)_systems 759 5 si_0759 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Toxin-antitoxin_replicon_stabilization_systems 760 354 si_0760 Regulation and Cell signaling Programmed Cell Death and Toxin-antitoxin Systems Toxin-antitoxin_systems_(other_than_RelBE_and_MazEF) 761 271.3 si_0761 Regulation and Cell signaling Quorum sensing and biofilm formation Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon) 762 12.6 si_0762 Regulation and Cell signaling Quorum sensing and biofilm formation Biofilm_Adhesin_Biosynthesis 763 1.2 si_0763 Regulation and Cell signaling Quorum sensing and biofilm formation Biofilm_formation_in_Staphylococcus 764 82 si_0764 Regulation and Cell signaling Quorum sensing and biofilm formation Quorum-sensing_in_Vibrio 765 1 si_0765 Regulation and Cell signaling Quorum sensing and biofilm formation Quorum_sensing_in_Yersinia 766 0.7 si_0766 Regulation and Cell signaling Quorum sensing and biofilm formation Quorum_sensing_regulation_in_Pseudomonas 767 87.1 si_0767 Regulation and Cell signaling Quorum sensing and biofilm formation Symbiotic_colonization_and_sigma-dependent_biofilm_formation_gene_cluster 768 0 si_0768 Regulation and Cell signaling Regulation of virulence A_conserved_operon_linked_to_TyrR_and_possibly_involved_in_virulence 769 0 si_0769 Regulation and Cell signaling Regulation of virulence SpeB-SpeF_extended_regulon 770 0 si_0770 Regulation and Cell signaling Regulation of virulence Streptococcal_Mga_Regulon 771 3.3 si_0771 Regulation and Cell signaling Regulation of virulence Streptococcus_pyogenes_virulence_regulators 772 68.5 si_0772 Regulation and Cell signaling Regulation of virulence Two-component_Response_Regulator_of_Virulence_ResDE 773 50.8 si_0773 Regulation and Cell signaling Regulation of virulence VieSAB_signal_transduction_system_of_Vibrio 774 54.2 si_0774 Regulation and Cell signaling Unclassified regulation and cell signaling Cell_envelope-associated_LytR-CpsA-Psr_transcriptional_attenuators 775 7.3 si_0775 Regulation and Cell signaling Unclassified regulation and cell signaling CytR_regulation 776 216.1 si_0776 Regulation and Cell signaling Unclassified regulation and cell signaling DNA-binding_regulatory_proteins,_strays 777 9.5 si_0777 Regulation and Cell signaling Unclassified regulation and cell signaling Global_Two-component_Regulator_PrrBA_in_Proteobacteria 778 17 si_0778 Regulation and Cell signaling Unclassified regulation and cell signaling HPr_catabolite_repression_system 779 1290.7 si_0779 Regulation and Cell signaling Unclassified regulation and cell signaling Orphan_regulatory_proteins 780 23.4 si_0780 Regulation and Cell signaling Unclassified regulation and cell signaling Oxygen_and_light_sensor_PpaA-PpsR 781 11.8 si_0781 Regulation and Cell signaling Unclassified regulation and cell signaling Pseudomonas_quinolone_signal_PQS 782 23.6 si_0782 Regulation and Cell signaling Unclassified regulation and cell signaling Rcs_phosphorelay_signal_transduction_pathway 783 82.5 si_0783 Regulation and Cell signaling Unclassified regulation and cell signaling Sex_pheromones_in_Enterococcus_faecalis_and_other_Firmicutes 784 129.2 si_0784 Regulation and Cell signaling Unclassified regulation and cell signaling Stringent_Response,_(p)ppGpp_metabolism 785 75.4 si_0785 Regulation and Cell signaling Unclassified regulation and cell signaling The_Chv_regulatory_system_of_Alphaproteobacteria 786 0.6 si_0786 Regulation and Cell signaling Unclassified regulation and cell signaling Trans-envelope_signaling_system_VreARI_in_Pseudomonas 787 245.4 si_0787 Regulation and Cell signaling Unclassified regulation and cell signaling Two-component_regulatory_systems_in_Campylobacter 788 0 si_0788 Regulation and Cell signaling Unclassified regulation and cell signaling WhiB_and_WhiB-type_regulatory_proteins_ 789 250.1 si_0789 Regulation and Cell signaling Unclassified regulation and cell signaling Zinc_regulated_enzymes 790 1936.9 si_0790 Regulation and Cell signaling Unclassified regulation and cell signaling cAMP_signaling_in_bacteria 791 978.5 si_0791 Respiration ATP synthases F0F1-type_ATP_synthase 792 0.3 si_0792 Respiration ATP synthases V-Type_ATP_synthase 793 1753.8 si_0793 Respiration Electron accepting reactions Anaerobic_respiratory_reductases 794 0.7 si_0794 Respiration Electron accepting reactions Terminal_AA3-600_quinol_oxidase 795 79.1 si_0795 Respiration Electron accepting reactions Terminal_cytochrome_C_oxidases 796 4.2 si_0796 Respiration Electron accepting reactions Terminal_cytochrome_O_ubiquinol_oxidase 797 519.9 si_0797 Respiration Electron accepting reactions Terminal_cytochrome_d_ubiquinol_oxidases 798 524 si_0798 Respiration Electron accepting reactions Terminal_cytochrome_oxidases 799 123.1 si_0799 Respiration Electron accepting reactions Tetrathionate_respiration 800 284.8 si_0800 Respiration Electron accepting reactions Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes 801 189.5 si_0801 Respiration Electron accepting reactions trimethylamine_N-oxide_(TMAO)_reductase 802 57.4 si_0802 Respiration Electron donating reactions CO_Dehydrogenase 803 101.2 si_0803 Respiration Electron donating reactions Coenzyme_F420-H2_dehydrogenase_(methanophenazine) 804 3.7 si_0804 Respiration Electron donating reactions Coenzyme_F420_hydrogenase 805 48 si_0805 Respiration Electron donating reactions Energy-conserving_hydrogenase_(ferredoxin) 806 96 si_0806 Respiration Electron donating reactions Formate_dehydrogenase 807 31.5 si_0807 Respiration Electron donating reactions H2:CoM-S-S-HTP_oxidoreductase 808 1772.6 si_0808 Respiration Electron donating reactions Hydrogenases 809 6.8 si_0809 Respiration Electron donating reactions Methanophenazine_hydrogenase 810 255.4 si_0810 Respiration Electron donating reactions Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes 811 438.6 si_0811 Respiration Electron donating reactions NiFe_hydrogenase_maturation 812 3537.7 si_0812 Respiration Electron donating reactions Respiratory_Complex_I 813 349 si_0813 Respiration Electron donating reactions Respiratory_dehydrogenases_1 814 184.8 si_0814 Respiration Electron donating reactions Succinate_dehydrogenase 815 362.2 si_0815 Respiration Sodium Ion-Coupled Energetics Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes 816 283.4 si_0816 Respiration Unclassified respiration Biogenesis_of_c-type_cytochromes 817 25.3 si_0817 Respiration Unclassified respiration Biogenesis_of_cbb3-type_cytochrome_c_oxidases 818 16 si_0818 Respiration Unclassified respiration Biogenesis_of_cytochrome_c_oxidases 819 99.3 si_0819 Respiration Unclassified respiration Carbon_monoxide_dehydrogenase_maturation_factors 820 777.2 si_0820 Respiration Unclassified respiration Carbon_monoxide_induced_hydrogenase 821 0.1 si_0821 Respiration Unclassified respiration Cytochrome_B6-F_complex 822 1.7 si_0822 Respiration Unclassified respiration Flavocytochrome_C 823 1365.7 si_0823 Respiration Unclassified respiration Formate_hydrogenase 824 109.1 si_0824 Respiration Unclassified respiration Quinone_oxidoreductase_family 825 0 si_0825 Respiration Unclassified respiration Reductive_Dechlorination 826 543.5 si_0826 Respiration Unclassified respiration Soluble_cytochromes_and_functionally_related_electron_carriers 827 47.1 si_0827 Secondary Metabolism Aromatic amino acids and derivatives Cinnamic_Acid_Degradation 828 0 si_0828 Secondary Metabolism Bacterial cytostatics, differentiation factors and antibiotics 2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens 829 5.1 si_0829 Secondary Metabolism Bacterial cytostatics, differentiation factors and antibiotics Clavulanic_acid_biosynthesis 830 1.7 si_0830 Secondary Metabolism Bacterial cytostatics, differentiation factors and antibiotics Nonribosomal_peptide_synthetases_(NRPS)_in_Frankia_sp._Ccl3 831 0 si_0831 Secondary Metabolism Bacterial cytostatics, differentiation factors and antibiotics Paerucumarin_Biosynthesis 832 83.5 si_0832 Secondary Metabolism Bacterial cytostatics, differentiation factors and antibiotics Phenazine_biosynthesis 833 30.2 si_0833 Secondary Metabolism Biologically active compounds in metazoan cell defence and differentiation Steroid_sulfates 834 0 si_0834 Secondary Metabolism Biosynthesis of phenylpropanoids Apigenin_derivatives 835 15.7 si_0835 Secondary Metabolism Biosynthesis of phenylpropanoids Biflavanoid_biosynthesis 836 13.4 si_0836 Secondary Metabolism Biosynthesis of phenylpropanoids Caffeic_acid_derivatives 837 30.7 si_0837 Secondary Metabolism Biosynthesis of phenylpropanoids Flavanone_biosynthesis 838 16.2 si_0838 Secondary Metabolism Biosynthesis of phenylpropanoids Phenylpropionate_Degradation 839 15.7 si_0839 Secondary Metabolism Biosynthesis of phenylpropanoids Tannin_biosynthesis 840 2 si_0840 Secondary Metabolism Plant Alkaloids Alkaloid_biosynthesis_from_L-lysine 841 240.1 si_0841 Secondary Metabolism Plant Hormones Auxin_biosynthesis 842 25.6 si_0842 Secondary Metabolism Plant Hormones Auxin_degradation 843 46.3 si_0843 Stress Response Acid stress Acid_resistance_mechanisms 844 106.1 si_0844 Stress Response Acid stress Glutamate_transporter_involved_in_acid_tolerance_in_Streptococcus 845 651.7 si_0845 Stress Response Cold shock Cold_shock,_CspA_family_of_proteins 846 20.4 si_0846 Stress Response Dessication stress O-antigen_capsule_important_for_environmental_persistence 847 14 si_0847 Stress Response Detoxification D-tyrosyl-tRNA(Tyr)_deacylase 848 22.5 si_0848 Stress Response Detoxification Glutathione-dependent_pathway_of_formaldehyde_detoxification 849 26.3 si_0849 Stress Response Detoxification Tellurite_resistance:_Chromosomal_determinants 850 282.3 si_0850 Stress Response Detoxification Uptake_of_selenate_and_selenite 851 1237.7 si_0851 Stress Response Heat shock Heat_shock_dnaK_gene_cluster_extended 852 1.3 si_0852 Stress Response Osmotic stress Betaine_biosynthesis_from_glycine 853 995.8 si_0853 Stress Response Osmotic stress Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis 854 18.1 si_0854 Stress Response Osmotic stress Ectoine_biosynthesis_and_regulation 855 19.8 si_0855 Stress Response Osmotic stress Osmoprotectant_ABC_transporter_YehZYXW_of_Enterobacteriales 856 161.8 si_0856 Stress Response Osmotic stress Osmoregulation 857 150.8 si_0857 Stress Response Osmotic stress Synthesis_of_osmoregulated_periplasmic_glucans 858 32.3 si_0858 Stress Response Oxidative stress Glutaredoxins 859 46.8 si_0859 Stress Response Oxidative stress Glutathione:_Biosynthesis_and_gamma-glutamyl_cycle 860 144.2 si_0860 Stress Response Oxidative stress Glutathione:_Non-redox_reactions 861 11 si_0861 Stress Response Oxidative stress Glutathione:_Redox_cycle 862 61.2 si_0862 Stress Response Oxidative stress Glutathione_analogs:_mycothiol 863 11.5 si_0863 Stress Response Oxidative stress Glutathionylspermidine_and_Trypanothione 864 931.5 si_0864 Stress Response Oxidative stress Oxidative_stress 865 107.5 si_0865 Stress Response Oxidative stress Protection_from_Reactive_Oxygen_Species 866 322.7 si_0866 Stress Response Oxidative stress Redox-dependent_regulation_of_nucleus_processes 867 178.3 si_0867 Stress Response Oxidative stress Regulation_of_Oxidative_Stress_Response 868 374.4 si_0868 Stress Response Oxidative stress Rubrerythrin 869 0.5 si_0869 Stress Response Periplasmic Stress Periplasmic_Acid_Stress_Response_in_Enterobacteria 870 230 si_0870 Stress Response Periplasmic Stress Periplasmic_Stress_Response 871 720.7 si_0871 Stress Response Unclassified stress response Bacterial_hemoglobins 872 43.2 si_0872 Stress Response Unclassified stress response Carbon_Starvation 873 46.3 si_0873 Stress Response Unclassified stress response Commensurate_regulon_activation 874 151.8 si_0874 Stress Response Unclassified stress response Dimethylarginine_metabolism 875 22.4 si_0875 Stress Response Unclassified stress response Flavohaemoglobin 876 156.9 si_0876 Stress Response Unclassified stress response Hfl_operon 877 420.1 si_0877 Stress Response Unclassified stress response Phage_shock_protein_(psp)_operon 878 910.6 si_0878 Stress Response Unclassified stress response SigmaB_stress_responce_regulation 879 7 si_0879 Stress Response Unclassified stress response Sugar-phosphate_stress_regulation 880 89.4 si_0880 Stress Response Unclassified stress response Universal_stress_protein_family 881 1362.9 si_0881 Sulfur Metabolism Inorganic sulfur assimilation Inorganic_Sulfur_Assimilation 882 494.5 si_0882 Sulfur Metabolism Organic sulfur assimilation Alkanesulfonate_assimilation 883 339.8 si_0883 Sulfur Metabolism Organic sulfur assimilation Alkanesulfonates_Utilization 884 0 si_0884 Sulfur Metabolism Organic sulfur assimilation DMSP_breakdown 885 184.5 si_0885 Sulfur Metabolism Organic sulfur assimilation L-Cystine_Uptake_and_Metabolism 886 58.2 si_0886 Sulfur Metabolism Organic sulfur assimilation Taurine_Utilization 887 649.9 si_0887 Sulfur Metabolism Organic sulfur assimilation Utilization_of_glutathione_as_a_sulphur_source 888 117.7 si_0888 Sulfur Metabolism Unclassified sulfur metabolism Dimethylsulfoniopropionate_(DMSP)_mineralization 889 74.4 si_0889 Sulfur Metabolism Unclassified sulfur metabolism Galactosylceramide_and_Sulfatide_metabolism 890 18 si_0890 Sulfur Metabolism Unclassified sulfur metabolism Release_of_Dimethyl_Sulfide_(DMS)_from_Dimethylsulfoniopropionate_(DMSP) 891 882.6 si_0891 Sulfur Metabolism Unclassified sulfur metabolism Sulfate_reduction-associated_complexes 892 32.3 si_0892 Sulfur Metabolism Unclassified sulfur metabolism Sulfur_oxidation 893 378 si_0893 Sulfur Metabolism Unclassified sulfur metabolism Thioredoxin-disulfide_reductase 894 45.7 si_0894 Virulence Adhesion Type_1_pili_(mannose-sensitive_fimbriae) 895 0 si_0895 Virulence Fimbriae of the Chaperone/Usher Assembly Pathway α-Fimbriae 896 0 si_0896 Virulence Fimbriae of the Chaperone/Usher Assembly Pathway α-related_Fimbriae_in_Yersinia 897 0.7 si_0897 Virulence Fimbriae of the Chaperone/Usher Assembly Pathway β-Fimbriae 898 0 si_0898 Virulence Fimbriae of the Chaperone/Usher Assembly Pathway κ-Fimbriae 899 1.5 si_0899 Virulence Fimbriae of the Chaperone/Usher Assembly Pathway σ-Fimbriae 900 0 si_0900 Virulence Quorum sensing and biofilm formation Acyl_Homoserine_Lactone_(AHL)_Autoinducer_Quorum_Sensing_ 901 323.8 si_0901 Virulence Resistance to antibiotics and toxic compounds BlaR1_Family_Regulatory_Sensor-transducer_Disambiguation 902 2.5 si_0902 Virulence Resistance to antibiotics and toxic compounds Erythromycin_resistance 903 0.4 si_0903 Virulence Resistance to antibiotics and toxic compounds Polymyxin_Synthetase_Gene_Cluster_in_Bacillus 904 0 si_0904 Virulence Toxins and superantigens Diphtheria_toxin 905 0 si_0905 Virulence Toxins and superantigens Streptococcus_agalactiae_hemolysin_operon 906 143.7 si_0906 Virulence Type III, Type IV, Type VI, ESAT secretion systems Type_4_secretion_and_conjugative_transfer 907 47.6 si_0907 Virulence Unclassified virulence Streptococcus_agalactiae_virulome 908 29.3 si_0908 Virulence, Disease and Defense Adhesion Accessory_colonization_factor 909 4.9 si_0909 Virulence, Disease and Defense Adhesion Adhesins_in_Staphylococcus 910 33 si_0910 Virulence, Disease and Defense Adhesion Adhesion_of_Campylobacter 911 0 si_0911 Virulence, Disease and Defense Adhesion Decorin_binding_proteins_of_Borrelia 912 87.5 si_0912 Virulence, Disease and Defense Adhesion Mediator_of_hyperadherence_YidE_in_Enterobacteria_and_its_conserved_region 913 0 si_0913 Virulence, Disease and Defense Adhesion Streptococcus_pyogenes_recombinatorial_zone 914 118.4 si_0914 Virulence, Disease and Defense Bacteriocins, ribosomally synthesized antibacterial peptides Bacitracin_Stress_Response 915 1.8 si_0915 Virulence, Disease and Defense Bacteriocins, ribosomally synthesized antibacterial peptides Bacteriocin-like_peptides_Blp 916 4.2 si_0916 Virulence, Disease and Defense Bacteriocins, ribosomally synthesized antibacterial peptides Marinocine,_a_broad-spectrum_antibacterial_protein 917 54.1 si_0917 Virulence, Disease and Defense Bacteriocins, ribosomally synthesized antibacterial peptides Tolerance_to_colicin_E2 918 222.8 si_0918 Virulence, Disease and Defense Detection MLST 919 28.9 si_0919 Virulence, Disease and Defense Invasion and intracellular resistance Cytolysin_and_Lipase_operon_in_Vibrio 920 0 si_0920 Virulence, Disease and Defense Invasion and intracellular resistance Gram-Positive_Extracellular_Nucleases 921 8.6 si_0921 Virulence, Disease and Defense Invasion and intracellular resistance Listeria_surface_proteins:_Internalin-like_proteins 922 0 si_0922 Virulence, Disease and Defense Invasion and intracellular resistance Listeria_surface_proteins:_LPXTG_motif 923 6.5 si_0923 Virulence, Disease and Defense Invasion and intracellular resistance Salmonella_invasion_locus 924 164.5 si_0924 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Adaptation_to_d-cysteine 925 3.5 si_0925 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Aminoglycoside_adenylyltransferases 926 543.5 si_0926 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Arsenic_resistance 927 714.9 si_0927 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Beta-lactamase 928 43.6 si_0928 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Cadmium_resistance 929 587.2 si_0929 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Cobalt-zinc-cadmium_resistance 930 393.2 si_0930 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Copper_homeostasis 931 0 si_0931 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Fosfomycin_resistance 932 4 si_0932 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Lysozyme_inhibitors 933 38.6 si_0933 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Mercuric_reductase 934 25.9 si_0934 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Mercury_resistance_operon 935 212.7 si_0935 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Methicillin_resistance_in_Staphylococci 936 9.6 si_0936 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds MexA-MexB-OprM_Multidrug_Efflux_System 937 9.3 si_0937 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds MexC-MexD-OprJ_Multidrug_Efflux_System 938 63.2 si_0938 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds MexE-MexF-OprN_Multidrug_Efflux_System 939 1154.2 si_0939 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Multidrug_Resistance_Efflux_Pumps 940 0 si_0940 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Multidrug_Resistance_Operon_mdtRP_of_Bacillus 941 19.2 si_0941 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Multidrug_efflux_pump_in_Campylobacter_jejuni_(CmeABC_operon) 942 398.8 si_0942 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Multiple_Antibiotic_Resistance_MAR_locus 943 20.1 si_0943 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Resistance_to_Vancomycin 944 65.2 si_0944 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Resistance_to_chromium_compounds 945 959.4 si_0945 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Resistance_to_fluoroquinolones 946 50.2 si_0946 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus 947 0 si_0947 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Streptothricin_resistance 948 0 si_0948 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Teicoplanin-resistance_in_Staphylococcus 949 44.9 si_0949 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds The_mdtABCD_multidrug_resistance_cluster 950 2021 si_0950 Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Zinc_resistance 951 0 si_0951 Virulence, Disease and Defense Toxins and superantigens Cholera_toxin 952 0 si_0952 Virulence, Disease and Defense Toxins and superantigens Cytolethal_distending_toxin_of_Campylobacter_jejuni 953 0 si_0953 Virulence, Disease and Defense Toxins and superantigens Cytolethal_distending_toxins 954 0 si_0954 Virulence, Disease and Defense Toxins and superantigens Pertussis_toxin 955 0 si_0955 Virulence, Disease and Defense Toxins and superantigens Prophage-encoded_Exotoxins 956 0 si_0956 Virulence, Disease and Defense Toxins and superantigens SLO-NADGH_Locus 957 0 si_0957 Virulence, Disease and Defense Toxins and superantigens Staphylococcus_Two-component_and_Pore-forming_Cytolysins 958 6.2 si_0958 Virulence, Disease and Defense Toxins and superantigens Streptolysin_S_Biosynthesis_and_Transport 959 48.6 si_0959 Virulence, Disease and Defense Unclassified virulence, disease and defense Bacterial_cyanide_production_and_tolerance_mechanisms 960 94.2 si_0960 Virulence, Disease and Defense Unclassified virulence, disease and defense C_jejuni_colonization_of_chick_caeca 961 20.4 si_0961 Virulence, Disease and Defense Unclassified virulence, disease and defense Streptococcus_pyogenes_Virulome 962 83855 si_0962 No Function Match No Function Match None