FastQCFastQC Report
Tue 14 May 2013
bin_W-DeltaSymb.bbnorm.t40m10x100.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename bin_W-DeltaSymb.bbnorm.t40m10x100.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4899414
Filtered Sequences 0
Sequence length 150
%GC 50

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 3359115 4.8395195 5.7907715 145-146
AAAAA 3193390 4.5787706 5.929522 1
ATTTT 2350565 3.3832457 4.541182 1
CCGGC 2247910 3.211282 3.4221168 145-146
GCCGG 2255490 3.209903 3.3674912 135-139
AAAAT 2187365 3.1393106 4.027349 1