



#######################################################################

WARNING. WARNING. WARNING.

This project has been automatically analyzed by the 'draftQD.sh' script,
a crude zeroth order, project clean up script, designed to identify and
remove low quality and contaminant reads from a project. The heuristics
used by the script may both remove valid project data and fail to remove
bona fide contaminants. 

The following sets of reads have been removed from the project fasta in 
this edit_dir only. The trace data of possible contaminants has not been
removed from the project. Therefore, if you are using automated assembly 
procedures which recreate a project fasta from data in the partitions, 
then reads removed in this edit_dir will be present in new file. 

Removed reads lists:

reads.lowQual.q20lt100 -- less than 100 contiguous q20 bases not X
reads.2RdContigs -- all reads from 2 read contigs
reads.possible.eukaryota -- 98%id, 200bp+ blast hits to eukaryotic
	entries in 'nt'

After removing suspect reads from the project fasta, a new assembly
was created in this directory using the cleaned fasta file.


#######################################################################

reads removed from fasta:

     181 reads.2RdContigs
    8865 reads.lowQual.q20lt100
       4 reads.possible.eukaryota
    9050 total reads removed

   75234 reads in project prior to draftQD
