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WARNING. WARNING. WARNING. 

13Nov03 

This project has been automatically analyzed by the 'draftQD.sh' script, a
crude zeroth order, project clean up script, designed to identify and remove
low quality and contaminant reads from a project. The heuristics used by the
script may both remove valid project data and fail to remove bona fide
contaminants. The following sets of reads have been removed from the project
fasta in this edit_dir only. The trace data of possible contaminants has not
been removed from the project. Therefore, if you are using automated assembly
procedures which recreate a project fasta from data in the partitions, then
reads removed in this edit_dir will be present in new file. 

Removed reads lists: 

reads.lowQual.q20lt100 -- less than 100 contiguous q20 bases not X
reads.2RdContigs -- all reads from 2 read contigs 
reads.possible.eukaryota -- 98%id, 200bp+ blast hits to eukaryotic entries in 'nt' 

After removing suspect reads from the project fasta, a new assembly was created
in this directory using the cleaned fasta file. 

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reads removed from fasta:

	356 reads.2RdContigs 
	6703 reads.lowQual.q20lt100 
	227 reads.possible.eukaryota 
	7286 total

	110083 reads prior to clean up