genelib report for 4000189, SCSG

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameMicromonas pusilla NOUM17 (RCC 299)
genus_speciesMicromonas pusilla
strainNOUM17 (RCC 299)
source_librarysource_library_name
vector_name
source_dnasource_dna_nameMipu_0002
source_dna_number4000189
source_dna_typeWhole Genome
seq_projectproject_number4000189
project_type2005 Microbe Projects
draft_analysis_group_des
deadline30-SEP-05
seq_librarylibrary_nameSCSG
library_type16s ribosomal Archaea
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size1.5
plates_expected
depth_target
insert_userdscott
date_entered21-OCT-05
seq_lib_vectorvector_namepCR4-TOPO_archaea
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number112716
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192807777N/A
Failed01630N/A

Contigs Output: 77

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
751
12

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(75)_SCSG674699.61724gi|33327225|gb|AF525874.1| Uncultured marine eukaryote clone UEPACMp5 18S ribosomal RNA gene, complete sequence
99.51724gi|33327218|gb|AF525867.1| Uncultured marine eukaryote clone UEPAC40p3 18S ribosomal RNA gene, complete sequence
99.71680gi|65427923|gb|AY954994.1| Micromonas pusilla strain CCMP1545 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.71680gi|65427932|gb|AY955003.1| Micromonas pusilla strain CCMP490 genotype A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.71680gi|65427934|gb|AY955005.1| Micromonas pusilla strain CCMP491 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
CLUSTER0(75)_SCSG676699.81734gi|33327225|gb|AF525874.1| Uncultured marine eukaryote clone UEPACMp5 18S ribosomal RNA gene, complete sequence
99.71734gi|33327218|gb|AF525867.1| Uncultured marine eukaryote clone UEPAC40p3 18S ribosomal RNA gene, complete sequence
99.91683gi|65427923|gb|AY954994.1| Micromonas pusilla strain CCMP1545 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.91683gi|65427932|gb|AY955003.1| Micromonas pusilla strain CCMP490 genotype A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.91683gi|65427934|gb|AY955005.1| Micromonas pusilla strain CCMP491 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
CLUSTER0(75)_SCSG679699.71716gi|33327225|gb|AF525874.1| Uncultured marine eukaryote clone UEPACMp5 18S ribosomal RNA gene, complete sequence
99.61716gi|33327218|gb|AF525867.1| Uncultured marine eukaryote clone UEPAC40p3 18S ribosomal RNA gene, complete sequence
99.81683gi|65427923|gb|AY954994.1| Micromonas pusilla strain CCMP1545 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.81683gi|65427932|gb|AY955003.1| Micromonas pusilla strain CCMP490 genotype A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.81683gi|65427934|gb|AY955005.1| Micromonas pusilla strain CCMP491 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
CLUSTER0(75)_SCSG681699.51724gi|33327225|gb|AF525874.1| Uncultured marine eukaryote clone UEPACMp5 18S ribosomal RNA gene, complete sequence
99.41724gi|33327218|gb|AF525867.1| Uncultured marine eukaryote clone UEPAC40p3 18S ribosomal RNA gene, complete sequence
99.61686gi|65427923|gb|AY954994.1| Micromonas pusilla strain CCMP1545 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.61686gi|65427932|gb|AY955003.1| Micromonas pusilla strain CCMP490 genotype A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
99.61686gi|65427934|gb|AY955005.1| Micromonas pusilla strain CCMP491 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
CLUSTER1(1)_SCSG680298.51348Mantoniella squamata str. CCAP 1965/1 X90641.1 (Bacteria; Cyanobacteria; Cyanobacteria; Chloroplasts; Chlamydomonas et al. chloropla)
98.21306bacterioplankton clone AEGEAN_115 AF406549.1 (Bacteria; Cyanobacteria; Cyanobacteria; Chloroplasts; Chlamydomonas et al. chloropla)
931350Cape Hatteras picoplankton clone OM5 U70715.1 (Bacteria; Cyanobacteria; Cyanobacteria; Chloroplasts; Chlamydomonas et al. chloropla)
90.1374microbial mat clone BGC-Fr054 AY151722.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
87.1248microbial mat clone BGC-Fr054 AY151722.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
91.9136microbial mat clone BGC-Fr054 AY151722.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
89.8374Antarctic LB3-1 clone AF076157.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
87.1248Antarctic LB3-1 clone AF076157.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
91.9136Antarctic LB3-1 clone AF076157.1 (Bacteria; Cyanobacteria; Cyanobacteria; Plectonema)
CLUSTER2(1)_SCSG6764971678gi|65427923|gb|AY954994.1| Micromonas pusilla strain CCMP1545 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
971678gi|65427932|gb|AY955003.1| Micromonas pusilla strain CCMP490 genotype A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
971678gi|65427934|gb|AY955005.1| Micromonas pusilla strain CCMP491 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
971678gi|33327225|gb|AF525874.1| Uncultured marine eukaryote clone UEPACMp5 18S ribosomal RNA gene, complete sequence
96.81678gi|33327218|gb|AF525867.1| Uncultured marine eukaryote clone UEPAC40p3 18S ribosomal RNA gene, complete sequence