genelib report for 4000245, SCCN

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameCalyptogena magnifica symbiont
genus_speciesCalyptogena magnifica
strainsymbiont
source_librarysource_library_name
vector_name
source_dnasource_dna_nameCama_0001
source_dna_number4000245
source_dna_typeWhole Genome
seq_projectproject_number4000245
project_type2005 Microbe Projects
draft_analysis_group_des
deadline30-SEP-05
seq_librarylibrary_nameSCCN
library_type16s ribosomal Bacteria
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size1.5
plates_expected
depth_target
insert_userdscott
date_entered19-AUG-05
seq_lib_vectorvector_namepCR4-TOPO_eubacteria
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number112761
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192959494N/A
Failed0110N/A

Contigs Output: 94

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
921
12

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(92)_SCCN38899.71410Calyptogena magnifica symbiont M99446.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
99.91365Calyptogena magnifica gill symbiont AF035721.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.91410Calyptogena fossajaponica gill thioautotophic symbiont AB044744.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.81366Calyptogena phaseoliformis gill symbiont AF035724.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.51365Calyptogena sp. Florida gill symbiont AF035722.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
CLUSTER0(92)_SCCN41399.71410Calyptogena magnifica symbiont M99446.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
99.91365Calyptogena magnifica gill symbiont AF035721.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.91410Calyptogena fossajaponica gill thioautotophic symbiont AB044744.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.81366Calyptogena phaseoliformis gill symbiont AF035724.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.51365Calyptogena sp. Florida gill symbiont AF035722.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
CLUSTER0(92)_SCCN41699.71410Calyptogena magnifica symbiont M99446.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
99.91365Calyptogena magnifica gill symbiont AF035721.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.91410Calyptogena fossajaponica gill thioautotophic symbiont AB044744.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.81366Calyptogena phaseoliformis gill symbiont AF035724.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.51365Calyptogena sp. Florida gill symbiont AF035722.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
CLUSTER0(92)_SCCN44899.81410Calyptogena magnifica symbiont M99446.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
99.91365Calyptogena magnifica gill symbiont AF035721.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.91410Calyptogena fossajaponica gill thioautotophic symbiont AB044744.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.91366Calyptogena phaseoliformis gill symbiont AF035724.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
97.61365Calyptogena sp. Florida gill symbiont AF035722.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; SUP05)
CLUSTER1(1)_SCCN4411001454IFO13582) AB020186.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae)
99.91455Comamonas sp. 158 AJ002803.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae)
99.91455Delftia acidovorans str. WDL34 AF538930.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae)
99.91457Delftia acidovorans str. MC1 AF149849.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae)
99.71455deep-sea sediment clone BD5-11 AB015567.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae)
CLUSTER2(1)_SCCN39995.41430pumice fragments exposed to Mid-Atlantic Ridge vent clone AT-pp13 AY225610.1 (Bacteria; Proteobacteria; Epsilon proteobacteria; Campylobacteraceae; Arcobacter)
94.61437Endosymbiotic eubacteria D83061.1 (Bacteria; Proteobacteria; Epsilon proteobacteria; Campylobacteraceae; Arcobacter)
94.41424Riftia pachyptila's tube clone R103-B70 AF449239.1 (Bacteria; Proteobacteria; Epsilon proteobacteria; Campylobacteraceae; Arcobacter)
93.51438marine bone clone boneC3A6 AY548993.1 (Bacteria; Proteobacteria; Epsilon proteobacteria; Campylobacteraceae; Arcobacter)
93.31438marine bone clone sacC3E4 AY548986.1 (Bacteria; Proteobacteria; Epsilon proteobacteria; Campylobacteraceae; Arcobacter)