genelib report for 4000265, SUCT

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameDehalococcoides sp. VS
genus_speciesDehalococcoides sp.
strainVS
source_librarysource_library_name
vector_name
source_dnasource_dna_nameDesp_0002
source_dna_number4000265
source_dna_typeWhole Genome
seq_projectproject_number4000265
project_type2005 Microbe Projects
draft_analysis_group_des
deadline30-SEP-05
seq_librarylibrary_nameSUCT
library_type16s ribosomal
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size1.5
plates_expected
depth_target
insert_userdscott
date_entered24-JUN-05
seq_lib_vectorvector_namepCR4-TOPO
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number112770
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192878787N/A
Failed0900N/A

Contigs Output: 87

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
591
131
71
23
12

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(59)_SUCT41999.91420Dehalococcoides sp. VS AY323233.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
1001376chloroethene-contaminated site clone DHC-lf13 sp. AF388542.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
1001376chloroethene-contaminated site clone DHC-dll sp. AF388536.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91376chloroethene-contaminated sludge pond clone DHC-bmtv sp. AF388533.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91377chloroethene-contaminated site clone DHC-vic sp. AF388550.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
CLUSTER0(59)_SUCT42499.91415Dehalococcoides sp. VS AY323233.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91377chloroethene-contaminated site clone DHC-lf13 sp. AF388542.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91377chloroethene-contaminated site clone DHC-dll sp. AF388536.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91377chloroethene-contaminated sludge pond clone DHC-bmtv sp. AF388533.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.81378chloroethene-contaminated site clone DHC-vic sp. AF388550.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
CLUSTER0(59)_SUCT4451001419Dehalococcoides sp. VS AY323233.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
1001376chloroethene-contaminated site clone DHC-lf13 sp. AF388542.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
1001376chloroethene-contaminated site clone DHC-dll sp. AF388536.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91376chloroethene-contaminated sludge pond clone DHC-bmtv sp. AF388533.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
99.91377chloroethene-contaminated site clone DHC-vic sp. AF388550.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
CLUSTER0(59)_SUCT46498.9923Dehalococcoides sp. VS AY323233.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
98.9923chloroethene-contaminated site clone DHC-lf13 sp. AF388542.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
98.9923chloroethene-contaminated site clone DHC-dll sp. AF388536.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
98.9923chloroethene-contaminated sludge pond clone DHC-bmtv sp. AF388533.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
98.7924chloroethene-contaminated site clone DHC-vic sp. AF388550.1 (Bacteria; Chloroflexi; "Dehalococcoidetes)
CLUSTER1(13)_SUCT41199.71462gold mine isolate str. SA-8 AY695839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.51451gold mine isolate str. SA-10 AY695841.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.31457sulfate-reducing fluidized-bed reactor clone SR_FBR_L44 AY340839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.61440TCE-contaminated site clone ccslm209 AY133081.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
95.51467TCB-transforming consortium clone SJA-102 AJ009481.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
CLUSTER1(13)_SUCT42399.61457sulfate-reducing fluidized-bed reactor clone SR_FBR_L44 AY340839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.71450gold mine isolate str. SA-10 AY695841.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.51457gold mine isolate str. SA-8 AY695839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
99.51438TCE-contaminated site clone ccslm209 AY133081.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
95.11459TCB-transforming consortium clone SJA-102 AJ009481.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
CLUSTER2(7)_SUCT436971445-temperature biodegraded Canadian oil reservoir clone PL-10B5 AY570596.1 (Bacteria; Bacteroidetes; Bacteroidales)
93.61448mesophilic anaerobic BSA digester clone BSA1B-12 AB175366.1 (Bacteria; Bacteroidetes; Bacteroidales)
93.31448anaerobic digestor clone BC27 U81676.2 (Bacteria; Bacteroidetes; Bacteroidales)
93.41451mesophilic anaerobic BSA digester clone BSA1B-13 AB175367.1 (Bacteria; Bacteroidetes; Bacteroidales)
931449anaerobic sludge clone EUB50-2 AY693829.1 (Bacteria; Bacteroidetes; Bacteroidales)
CLUSTER3(2)_SUCT43899.41416soil collected near uranium mill tailings Gittersee/Coschuetz clone Gitt-GS-109 AJ582209.1 (Bacteria; Bacteroidetes; Bacteroidales)
97.61347uranium mill tailing clone KF-Gitt2-47 AJ295642.1 (Bacteria; Bacteroidetes; Bacteroidales)
95.41426Bacteroides sp. 22C AY554420.1 (Bacteria; Bacteroidetes; Bacteroidales)
95.31428anaerobic digestor clone BB23 AF129860.1 (Bacteria; Bacteroidetes; Bacteroidales)
95.31428anaerobic digestor clone BB23 AF129860.1 (Bacteria; Bacteroidetes; Bacteroidales)
CLUSTER4(2)_SUCT47897.91443bioreactor clone mle1-42 AF280863.1 (Bacteria; Synergistes; Synergistes)
97.2972DCE dechlorinating consortium clone DCE29 AJ249260.1 (Bacteria; Synergistes; Synergistes)
94.2452DCE dechlorinating consortium clone DCE29 AJ249260.1 (Bacteria; Synergistes; Synergistes)
92.4763termite gut homogenate clone Rs-N28 AB089064.2 (Bacteria; Synergistes; Synergistes)
96.5198termite gut homogenate clone Rs-N28 AB089064.2 (Bacteria; Synergistes; Synergistes)
92.2179termite gut homogenate clone Rs-N28 AB089064.2 (Bacteria; Synergistes; Synergistes)
92.2599bioreactor clone tbr1-2 AF280820.1 (Bacteria; Synergistes; Thermanaerovibrio)
89.4444bioreactor clone tbr1-2 AF280820.1 (Bacteria; Synergistes; Thermanaerovibrio)
96.7150bioreactor clone tbr1-2 AF280820.1 (Bacteria; Synergistes; Thermanaerovibrio)
91.3588bioreactor clone mle1-5 AF280844.1 (Bacteria; Synergistes; Thermanaerovibrio)
88.1447bioreactor clone mle1-5 AF280844.1 (Bacteria; Synergistes; Thermanaerovibrio)
96.7150bioreactor clone mle1-5 AF280844.1 (Bacteria; Synergistes; Thermanaerovibrio)
CLUSTER6(2)_SUCT40899.71442chlorobenzene-degrading consortium clone IA-10 AJ488067.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
97.81390Clostridium sp. str. FCB90-3 AJ229251.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
96.61443-temperature biodegraded Canadian oil reservoir clone PL-23B11 AY570608.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
92.61263Clostridium-like species U27711.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
96.689Clostridium-like species U27711.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
92.61263Clostridium-like species U27710.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
96.688Clostridium-like species U27710.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Lachnospiraceae)
CLUSTER5(1)_SUCT46699.91464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91461phylotype OTU-1 swine intestine clone p-229-o5 AF371848.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER7(1)_SUCT44797.11472gold mine isolate str. SA-8 AY695839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
96.91461gold mine isolate str. SA-10 AY695841.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
96.81467sulfate-reducing fluidized-bed reactor clone SR_FBR_L44 AY340839.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
971450TCE-contaminated site clone ccslm209 AY133081.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)
93.21479TCB-transforming consortium clone SJA-102 AJ009481.1 (Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema)