genelib report for 4001262, SUCF

Library Information (from Project Tracking System DB):

bio_class_genus_species	bio_classification_type	Single Organism
	bio_classification_name	Bifidobacterium infantis
	genus_species	Bifidobacterium infantis
	strain
source_library	source_library_name
	vector_name
source_dna	source_dna_name	Biin_0001
	source_dna_number	4001262
	source_dna_type	Whole Genome
seq_project	project_number	4001262
	project_type	WFO
	draft_analysis_group_des
	deadline	30-SEP-05
seq_library	library_name	SUCF
	library_type	16s ribosomal
	sequencing_type	Ribosomal
	internal_customer	Ribosomal Sequencing
	re_array
	insert_size_type	small
	target_insert_size	1.5
	plates_expected
	depth_target
	insert_user	dscott
	date_entered	24-JUN-05
seq_lib_vector	vector_name	pCR4-TOPO
shadow_parent	library_name
account	account_no	626881
	account_name	Sequencing Technology, GT Program
account_group	account_group	PROGRAMS ACCOUNTS
institution	code_name
sample	sample_number	113306
	dna_received
	sample_description
	ribosomal_profile

Processing Summary:

Reads Input: 192

	Read Pairing	Assemble	Qual Filters	Blast Filter	Chimera Checking
Passed	192	77	77	77	N/A
Failed	0	19	0	0	N/A

Contigs Output: 77

Number of Cluster by Size (Number of Members)

Size	Number of Clusters
51	1
13	1
7	1
2	2
1	2

Cluster Representatives Blast Hits

Cluster Rep ID	Pct-Id	Align len	Hit
CLUSTER0(51)_SUCF415	99.7	1451	Bifidobacterium longum bv. Infantis str. BG5 AY736853.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	99.4	1451	Bifidobacterium sp. group III-3 AF321297.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.9	1448	Bifidobacterium longum M58739.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	98.8	1386	Bifidobacterium longum str. KB 6 AY151399.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.4	1443	Bifidobacterium suis M58743.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
CLUSTER0(51)_SUCF440	99.7	1452	Bifidobacterium longum bv. Infantis str. BG5 AY736853.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	99.3	1452	Bifidobacterium sp. group III-3 AF321297.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.9	1442	Bifidobacterium longum M58739.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	98.8	1386	Bifidobacterium longum str. KB 6 AY151399.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.4	1440	Bifidobacterium suis M58743.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
CLUSTER0(51)_SUCF451	99.7	1452	Bifidobacterium longum bv. Infantis str. BG5 AY736853.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	99.3	1452	Bifidobacterium sp. group III-3 AF321297.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.9	1442	Bifidobacterium longum M58739.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	98.8	1386	Bifidobacterium longum str. KB 6 AY151399.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.4	1440	Bifidobacterium suis M58743.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
CLUSTER0(51)_SUCF469	99.7	1448	Bifidobacterium longum bv. Infantis str. BG5 AY736853.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	99.4	1448	Bifidobacterium sp. group III-3 AF321297.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.9	1448	Bifidobacterium longum M58739.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	98.8	1386	Bifidobacterium longum str. KB 6 AY151399.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
	97.4	1443	Bifidobacterium suis M58743.1 (Bacteria; Actinobacteria; Actinobacteridae; Bifidobacteriaceae)
CLUSTER1(13)_SUCF403	99.8	1465	Stenotrophomonas maltophilia str. e-p13 AJ293473.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.7	1460	Stenotrophomonas maltophilia str. LMG 10873 AJ131782.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.7	1460	Stenotrophomonas maltophilia str. LMG 957 AJ131114.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.7	1464	Stenotrophomonas maltophilia str. e-a23 AJ293472.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.6	1460	Stenotrophomonas maltophilia str. e-a21 AJ293470.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
CLUSTER1(13)_SUCF424	99.9	1462	Stenotrophomonas sp. str. JRL-2 AY747593.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales)
	99.8	1469	Stenotrophomonas maltophilia str. e-a22 AJ293474.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.7	1462	Stenotrophomonas sp. JRL-2 2 AF181569.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.5	1469	atrazine-catabolizing microbial absence methanol clone KRA30-21 AY081992.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
	99.5	1468	Stenotrophomonas sp. S3 AJ002814.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
CLUSTER4(7)_SUCF414	99.7	1464	Escherichia coli str. K12 D83536.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.5	1465	Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.5	1465	Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.5	1465	Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.5	1465	Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER5(2)_SUCF405	99.8	1462	Green Lake water isolate str. G2 AY345398.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.4	1452	phylotype OTU-226 swine intestine clone p-2009-s959-5 AF371851.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.2	1462	iron-reducing clone Core-2 AB111105.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.2	1464	Enterobacter sp. str. pptphilum AY596467.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
	99.5	1437	sugarcane mealybug endosymbiont clone N2 AY376704.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER6(2)_SUCF438	100	1166	Lactococcus subsp. lactis str. NIRD 712 AB100796.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus)
	100	1166	Lactococcus subsp. lactis str. NIAI SLN AB100797.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus)
	99.9	1166	Lactococcus lactis subsp. cremoris AB100802.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus)
	99.9	1166	Lactococcus lactis subsp. cremoris str. NIAI H-61 subsp. AB100792.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus)
	99.9	1166	Lactococcus lactis subsp. cremoris str. NIRD 924 subsp. AB100794.1 (Bacteria; Firmicutes (incl. basal lineag; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus)
CLUSTER2(1)_SUCF420	99.8	1452	negative extraction control population studies clone CTHB-18 AF067655.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae)
	99.7	1452	Janthinobacterium sp. HHS7 AJ846272.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae)
	99.7	1453	Janthinobacterium sp. HHS32 AJ846273.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae)
	99.7	1452	PCB-polluted soil clone WD293 AJ292625.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae)
	99.7	1452	lake microbial mat isolate str. R-7687 AJ440985.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae)
CLUSTER3(1)_SUCF426	100	1455	Ralstonia pickettii str. 2000030791 AY268179.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	100	1455	Ralstonia pickettii str. 2002721591 AY268178.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	100	1455	Ralstonia pickettii str. 2000030635 AY268180.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	100	1455	Ralstonia pickettii str. 2002721592 AY268177.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.9	1460	Ralstonia detusculanense str. APF11 AF280433.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)