genelib report for 4001421, SCUX

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameHalorubrum lacusprofundi
genus_speciesHalorubrum lacusprofundi
strain
source_librarysource_library_name
vector_name
source_dnasource_dna_nameHala_0001
source_dna_number4001421
source_dna_typeWhole Genome
seq_projectproject_number4001421
project_type2006 CSP
draft_analysis_group_des
deadline30-SEP-06
seq_librarylibrary_nameSCUX
library_type18s ribosomal Eukarya
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size.7
plates_expected
depth_target
insert_userdscott
date_entered08-NOV-05
seq_lib_vectorvector_namepCR4-TOPO_eukarya
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number113445
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192777575N/A
Failed01920N/A

Contigs Output: 75

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
311
271
32
111

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER5(31)_SCUX10371100886gi|49066436|gb|AY635837.1| Phycomyces blakesleeanus isolate AFTOL-ID 184 18S ribosomal RNA gene, partial sequence
99.8886gi|11078036|gb|AF157151.1|AF157151 Phycomyces blakesleeanus 18S ribosomal RNA gene, partial sequence
99.8886Phycomyces blakesleeanus#1753 bp##rna
95.2888gi|11078044|gb|AF157159.1|AF157159 Spinellus fusiger 18S ribosomal RNA gene, partial sequence
95.2888Spinellus fusiger#1750 bp##rna
CLUSTER5(31)_SCUX10394100880gi|49066436|gb|AY635837.1| Phycomyces blakesleeanus isolate AFTOL-ID 184 18S ribosomal RNA gene, partial sequence
99.8880gi|11078036|gb|AF157151.1|AF157151 Phycomyces blakesleeanus 18S ribosomal RNA gene, partial sequence
99.8880Phycomyces blakesleeanus#1753 bp##rna
95.1882gi|11078044|gb|AF157159.1|AF157159 Spinellus fusiger 18S ribosomal RNA gene, partial sequence
95.1882Spinellus fusiger#1750 bp##rna
CLUSTER5(31)_SCUX10430100888gi|49066436|gb|AY635837.1| Phycomyces blakesleeanus isolate AFTOL-ID 184 18S ribosomal RNA gene, partial sequence
99.8888gi|11078036|gb|AF157151.1|AF157151 Phycomyces blakesleeanus 18S ribosomal RNA gene, partial sequence
99.8888Phycomyces blakesleeanus#1753 bp##rna
95.2890gi|11078044|gb|AF157159.1|AF157159 Spinellus fusiger 18S ribosomal RNA gene, partial sequence
95.2890Spinellus fusiger#1750 bp##rna
CLUSTER2(27)_SCUX1037599.2877gi|6689054|emb|AJ236039.1|PTO236039 Paulownia tomentosa 18S rRNA gene
99.2877Paulownia tomentosa#1769 bp##rna
99.1877gi|4558890|gb|AF107579.1|AF107579 Catalpa bignonioides 18S ribosomal RNA gene, partial sequence
99.1877gi|6651252|gb|AF161011.1|AF161011 Verbascum thapsus 18S ribosomal RNA gene, partial sequence
99.1877gi|6687478|emb|AJ236034.1|EAB236034 Euthystachys abbreviata 18S rRNA gene
CLUSTER2(27)_SCUX1041899.3877gi|6689054|emb|AJ236039.1|PTO236039 Paulownia tomentosa 18S rRNA gene
99.3877Paulownia tomentosa#1769 bp##rna
99.2877gi|4558890|gb|AF107579.1|AF107579 Catalpa bignonioides 18S ribosomal RNA gene, partial sequence
99.2877gi|6651252|gb|AF161011.1|AF161011 Verbascum thapsus 18S ribosomal RNA gene, partial sequence
99.2877gi|6687478|emb|AJ236034.1|EAB236034 Euthystachys abbreviata 18S rRNA gene
CLUSTER2(27)_SCUX1043399.3877gi|6689054|emb|AJ236039.1|PTO236039 Paulownia tomentosa 18S rRNA gene
99.3877Paulownia tomentosa#1769 bp##rna
99.2877gi|4558890|gb|AF107579.1|AF107579 Catalpa bignonioides 18S ribosomal RNA gene, partial sequence
99.2877gi|6651252|gb|AF161011.1|AF161011 Verbascum thapsus 18S ribosomal RNA gene, partial sequence
99.2877gi|6687478|emb|AJ236034.1|EAB236034 Euthystachys abbreviata 18S rRNA gene
CLUSTER0(3)_SCUX1038799.2770gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.1770gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.1770gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.1770gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99770gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER7(3)_SCUX1038399.7865gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.4865gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.4865gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.4865gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99.3865gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER1(1)_SCUX1041694.7862gi|6689229|emb|AJ236031.1|SCA236031 Scrophularia californica 18S rRNA gene
94.7862Scrophularia californica#1760 bp##rna
94.5862gi|6651252|gb|AF161011.1|AF161011 Verbascum thapsus 18S ribosomal RNA gene, partial sequence
94.5862gi|6689054|emb|AJ236039.1|PTO236039 Paulownia tomentosa 18S rRNA gene
94.5862gi|7595571|gb|AF207051.1| Verbascum thapsus 18S ribosomal RNA gene, complete sequence
CLUSTER10(1)_SCUX1040996.5827Hordeum jubatum#1745 bp##rna
96.5827gi|7209267|emb|AJ272181.1|TAE272181 Triticum aestivum 18S rRNA gene for 18S ribosomal RNA, strain MV-15
96.5827Triticum aestivum#1764 bp##rna
96.3827gi|15982656|gb|AY049040.1| Triticum aestivum 18S ribosomal RNA gene, partial sequence
96.7797gi|45386022|gb|AY552749.1| Hordeum vulgare subsp. vulgare 18S ribosomal RNA gene, partial sequence
CLUSTER11(1)_SCUX1040093.9770gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
93.6770gi|31745028|dbj|AB112030.1| Verticillium fungicola var. flavidum genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
93.6770gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
93.6770gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
93.6770gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
CLUSTER12(1)_SCUX1038296.6787gi|27819259|gb|AY189655.1| Uncultured fungus clone EarCan128 18S ribosomal RNA gene, partial sequence
96.6787gi|27819262|gb|AY189658.1| Uncultured fungus clone EarCan131 18S ribosomal RNA gene, partial sequence
96.6787gi|27819264|gb|AY189660.1| Uncultured fungus clone EarCan133 18S ribosomal RNA gene, partial sequence
96.4788gi|27819256|gb|AY189652.1| Uncultured fungus clone EarCan125 18S ribosomal RNA gene, partial sequence
96.4787gi|27819258|gb|AY189654.1| Uncultured fungus clone EarCan127 18S ribosomal RNA gene, partial sequence
CLUSTER13(1)_SCUX1038189.6732gi|7619919|dbj|AB027321.1| Cordyceps ophioglossoides DNA for 18S ribosomal RNA
89.6732gi|27544139|dbj|AB099511.1| Paecilomyces marquandii genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
89.6732gi|42517099|dbj|AB162147.1| Claviceps purpurea genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete cds
89.6732gi|37931835|gb|AY245652.1| Cordyceps gracilioides 18S ribosomal RNA gene, partial sequence
89.6732gi|37931842|gb|AY245653.1| Cordyceps brongniartii 18S ribosomal RNA gene, partial sequence
CLUSTER14(1)_SCUX1040896717gi|6689054|emb|AJ236039.1|PTO236039 Paulownia tomentosa 18S rRNA gene
96717Paulownia tomentosa#1769 bp##rna
95.8717gi|4558890|gb|AF107579.1|AF107579 Catalpa bignonioides 18S ribosomal RNA gene, partial sequence
95.8717gi|6687111|emb|AJ236048.1|CDI236048 Callicarpa dichotoma 18S rRNA gene
95.8717gi|6687478|emb|AJ236034.1|EAB236034 Euthystachys abbreviata 18S rRNA gene
CLUSTER3(1)_SCUX1039695.8731gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
95.5731gi|7619919|dbj|AB027321.1| Cordyceps ophioglossoides DNA for 18S ribosomal RNA
95.5731gi|31745028|dbj|AB112030.1| Verticillium fungicola var. flavidum genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
95.5731gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
95.5731gi|42517099|dbj|AB162147.1| Claviceps purpurea genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete cds
CLUSTER4(1)_SCUX1041290.4718gi|4092851|dbj|AB021869.1| Rhodotorula glutinis gene for 18S rRNA, partial sequence
90.4718gi|51012362|gb|AY685200.1| Rhodotorula mucilaginosa isolate OC-3 18S ribosomal RNA, partial sequence
90.4718gi|58566001|gb|AY887944.1| Rhodotorula mucilaginosa strain HAW-OCF1 18S ribosomal RNA gene, partial sequence
90.4718Rhodotorula glutinis#1750 bp##rna
90.4718Rhodotorula mucilaginosa#1754 bp##rna
CLUSTER6(1)_SCUX1042196.9720gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
96.8720gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
96.8720gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
96.8720gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
96.7720gi|7619919|dbj|AB027321.1| Cordyceps ophioglossoides DNA for 18S ribosomal RNA
CLUSTER8(1)_SCUX1040587.1425gi|1332409|dbj|D85136.1|PYEA Paecilomyces tenuipes DNA for 18S rRNA
87.1425gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
87.1425gi|31745028|dbj|AB112030.1| Verticillium fungicola var. flavidum genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
87.1425gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
87.1425gi|37931823|gb|AY245650.1| Beauveria caledonica 18S ribosomal RNA gene, partial sequence
CLUSTER9(1)_SCUX1039795.5781gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
95.4781gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
95.4781gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
95.4781gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
95.3781gi|7619919|dbj|AB027321.1| Cordyceps ophioglossoides DNA for 18S ribosomal RNA