genelib report for 4001421, SFNB

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameHalorubrum lacusprofundi
genus_speciesHalorubrum lacusprofundi
strain
source_librarysource_library_name
vector_name
source_dnasource_dna_nameHala_0001
source_dna_number4001421
source_dna_typeWhole Genome
seq_projectproject_number4001421
project_type2006 CSP
draft_analysis_group_des
deadline30-SEP-06
seq_librarylibrary_nameSFNB
library_type16s ribosomal Bacteria
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size1.5
plates_expected
depth_target
insert_userdscott
date_entered14-FEB-06
seq_lib_vectorvector_namepCR4-TOPO_eubacteria
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number113445
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192919191N/A
Failed0500N/A

Contigs Output: 91

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
861
31
12

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(86)_SFNB39799.81464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71464Escherichia coli O157:H7 str. RIMD0509952 AB035925.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(86)_SFNB42799.91464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli O157:H7 str. RIMD0509952 AB035925.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(86)_SFNB44199.91464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli O157:H7 str. RIMD0509952 AB035925.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(86)_SFNB45299.91466intestine Zophobas mori clone AJ487021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91466Escherichia coli str. K12 AE000406.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91466Escherichia coli str. K-12 U18997.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91466Shigella flexneri 2a str. 2457T AE016989.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71466Shigella boydii X96965.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER1(3)_SFNB4331001407cf. Phyllobacterium rubiacearum clone Llangefni 28 AF290483.1 (Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae)
99.81407cf. Phyllobacterium myrsinacearum clone Llangefni 18 AF290484.1 (Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae)
99.61407Phyllobacterium myrsinacearum D12789.1 (Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae)
99.41407Phyllobacterium myrsinacearum HM35 AJ011330.1 (Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae)
99.21409Nanobacterium sanguineum Seralab FBS batch 901045 X98418.1 (Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae)
CLUSTER2(1)_SFNB41497.41403Shigella boydii X96965.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
97.41403Escherichia coli str. C2 AF403733.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
97.41403Shigella flexneri 2a str. 2457T AE016989.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
97.41403Shigella flexneri 2a str. 301 NC_004337.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
97.31403intestine Zophobas mori clone AJ487021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER3(1)_SFNB43999.71464Stenotrophomonas sp. S3 AJ002814.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
99.71464atrazine-catabolizing microbial absence methanol clone KRA30-21 AY081992.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
99.31464Stenotrophomonas maltophilia str. LMG 10877 AJ131784.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
991464Stenotrophomonas maltophilia str. LMG 11089 AJ131910.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)
99.21464Stenotrophomonas maltophilia AJ295673.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Xanthomonadales; Stenotrophomonas)