genelib report for 4001441, SFBT

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameMycosphaerella fijiensis
genus_speciesMycosphaerella fijiensis
strain
source_librarysource_library_name
vector_name
source_dnasource_dna_nameMyfi_0001
source_dna_number4001441
source_dna_typeWhole Genome
seq_projectproject_number4001441
project_type2006 CSP
draft_analysis_group_des
deadline30-SEP-05
seq_librarylibrary_nameSFBT
library_type18s ribosomal Eukarya
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size.7
plates_expected
depth_target
insert_userdscott
date_entered13-JAN-06
seq_lib_vectorvector_namepCR4-TOPO_eukarya
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number113452
dna_received
sample_description
ribosomal_profile

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192969695N/A
Failed0001N/A

Contigs Output: 95

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
741
81
71
51
11

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(74)_SFBT39399.8873gi|38201505|gb|AY357266.1| Anguillospora rubescens strain CCM F-11298 18S ribosomal RNA gene, partial sequence
99.5873gi|28412358|gb|AY190258.1| Dothideomycete sp. G17-R295 18S ribosomal RNA gene, partial sequence
99.5873gi|28412359|gb|AY190259.1| Dothideomycete sp. G17-R297 18S ribosomal RNA gene, partial sequence
99873gi|32347263|gb|AY220611.1| Capnobotryella renispora UAMH 9870 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
99873gi|32347264|gb|AY220612.1| Capnobotryella renispora CBS 214.90 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
CLUSTER0(74)_SFBT41099.7874gi|38201505|gb|AY357266.1| Anguillospora rubescens strain CCM F-11298 18S ribosomal RNA gene, partial sequence
99.4874gi|28412358|gb|AY190258.1| Dothideomycete sp. G17-R295 18S ribosomal RNA gene, partial sequence
99.4874gi|28412359|gb|AY190259.1| Dothideomycete sp. G17-R297 18S ribosomal RNA gene, partial sequence
98.9874gi|32347263|gb|AY220611.1| Capnobotryella renispora UAMH 9870 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
98.9874gi|32347264|gb|AY220612.1| Capnobotryella renispora CBS 214.90 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
CLUSTER0(74)_SFBT42099.9870gi|38201505|gb|AY357266.1| Anguillospora rubescens strain CCM F-11298 18S ribosomal RNA gene, partial sequence
99.7870gi|28412358|gb|AY190258.1| Dothideomycete sp. G17-R295 18S ribosomal RNA gene, partial sequence
99.7870gi|28412359|gb|AY190259.1| Dothideomycete sp. G17-R297 18S ribosomal RNA gene, partial sequence
98.9870gi|32347263|gb|AY220611.1| Capnobotryella renispora UAMH 9870 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
98.9870gi|32347264|gb|AY220612.1| Capnobotryella renispora CBS 214.90 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
CLUSTER0(74)_SFBT42599.9872gi|38201505|gb|AY357266.1| Anguillospora rubescens strain CCM F-11298 18S ribosomal RNA gene, partial sequence
99.7872gi|28412358|gb|AY190258.1| Dothideomycete sp. G17-R295 18S ribosomal RNA gene, partial sequence
99.7872gi|28412359|gb|AY190259.1| Dothideomycete sp. G17-R297 18S ribosomal RNA gene, partial sequence
98.9872gi|32347263|gb|AY220611.1| Capnobotryella renispora UAMH 9870 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
98.9872gi|32347264|gb|AY220612.1| Capnobotryella renispora CBS 214.90 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
CLUSTER3(8)_SFBT43499.8859Chytridiomycetes sp.#1726 bp##rna
99.4543gi|6707256|gb|AH009052.1|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
100280gi|6707256|gb|AH009052.1|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
99.4542gi|6707184|gb|AF164301.1|AF164301S1 Batrachochytrium dendrobatidis 18S ribosomal RNA gene, partial sequence
93.2606gi|49066425|gb|AY635826.1| Entophlyctis helioformis isolate AFTOL-ID 40 18S ribosomal RNA gene, partial sequence
91.3698Mortierella alpina#1907 bp##rna
CLUSTER2(7)_SFBT39499.9868gi|6979791|gb|AF219122.1|AF219122 Fusarium oxysporum f. sp. vasinfectum isolate Ag149-I 18S ribosomal RNA gene, partial sequence
99.9868gi|6979792|gb|AF219123.1|AF219123 Fusarium oxysporum f. sp. vasinfectum isolate Ag149-II 18S ribosomal RNA gene, partial sequence
99.9868gi|6979793|gb|AF219124.1|AF219124 Fusarium oxysporum f. sp. vasinfectum isolate Ag149-III 18S ribosomal RNA gene, partial sequence
99.9868gi|4835916|gb|AF141946.1| Gibberella avenacea 18S ribosomal RNA, partial sequence
99.9868gi|4835921|gb|AF141951.1| Fusarium oxysporum 18S ribosomal RNA, partial sequence
CLUSTER1(5)_SFBT39699.7890gi|53693104|gb|AY742755.1| Pythium aphanidermatum 18S ribosomal RNA gene, partial sequence
99.1890gi|5327235|emb|AJ238654.1|PUN238654 Phytophthora undulata 18S rRNA gene, partial
99.1890Phytophthora undulata#1788 bp##rna
98.7890gi|9837548|gb|AF289981.1|AF289981 Pythium insidiosum 18S ribosomal RNA gene, partial sequence
98.7890gi|42412527|gb|AY486144.1| Pythium insidiosum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
CLUSTER4(1)_SFBT45494.7873gi|9967920|emb|AJ271382.1|EVA271382 Tilletiopsis washingtonensis partial 18S rRNA gene, strain RBF1008 = PB393
94.7873Exobasidium vaccinii#1755 bp##rna
94.4873gi|5689077|dbj|AB023413.1| Tilletiopsis cremea gene for 18S rRNA
94.4873Tilletiopsis cremea#1767 bp##rna
94873gi|1905767|dbj|D83192.1| Tilletiopsis washingtonensis 18S rRNA gene, partial sequence