| Cluster Rep ID | Pct-Id | Align len | Hit |
| CLUSTER0(45)_SFFG405 | 98.5 | 1068 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 98.7 | 631 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 98.5 | 1068 | Neocallimastix frontalis#1736 bp##rna |
| 98.7 | 631 | Neocallimastix frontalis#1736 bp##rna |
| 98.5 | 1068 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 98.9 | 622 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 98.5 | 1068 | Neocallimastix sp.#1717 bp##rna |
| 98.9 | 622 | Neocallimastix sp.#1717 bp##rna |
| 96 | 1075 | Neocallimastix joyonii#1532 bp##rna |
| 98.1 | 431 | Neocallimastix joyonii#1532 bp##rna |
| CLUSTER0(45)_SFFG427 | 98.3 | 1069 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 99.1 | 633 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 98.3 | 1069 | Neocallimastix frontalis#1736 bp##rna |
| 99.1 | 633 | Neocallimastix frontalis#1736 bp##rna |
| 98.3 | 1069 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 99 | 622 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 98.3 | 1069 | Neocallimastix sp.#1717 bp##rna |
| 99 | 622 | Neocallimastix sp.#1717 bp##rna |
| 95.9 | 1077 | Neocallimastix joyonii#1532 bp##rna |
| 98.4 | 431 | Neocallimastix joyonii#1532 bp##rna |
| CLUSTER0(45)_SFFG480 | 98.6 | 1068 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 99.1 | 640 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 98.6 | 1068 | Neocallimastix frontalis#1736 bp##rna |
| 99.1 | 640 | Neocallimastix frontalis#1736 bp##rna |
| 98.6 | 1068 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 99 | 622 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 98.6 | 1068 | Neocallimastix sp.#1717 bp##rna |
| 99 | 622 | Neocallimastix sp.#1717 bp##rna |
| 96 | 1099 | Neocallimastix joyonii#1532 bp##rna |
| 98.4 | 431 | Neocallimastix joyonii#1532 bp##rna |
| CLUSTER1(2)_SFFG431 | 93 | 1106 | Neocallimastix joyonii#1532 bp##rna |
| 96.8 | 431 | Neocallimastix joyonii#1532 bp##rna |
| 94.3 | 1075 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 99.1 | 640 | gi|886690|emb|X80341.1|NF18SRRN N.frontalis L2 18S rRNA gene |
| 94.3 | 1075 | Neocallimastix frontalis#1736 bp##rna |
| 99.1 | 640 | Neocallimastix frontalis#1736 bp##rna |
| 94.9 | 998 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 99 | 622 | gi|168743|gb|M59761.1|NEORR18S Neocallimastix sp. LM-2 18S ribosomal RNA gene, partial sequence |
| 94.9 | 998 | Neocallimastix sp.#1717 bp##rna |
| 99 | 622 | Neocallimastix sp.#1717 bp##rna |