genelib report for 4002219, SFCB

Library Information (from Project Tracking System DB):

bio_class_genus_species	bio_classification_type	Single Organism
	bio_classification_name	Methanocorpusculum labreanum Z
	genus_species	Methanocorpusculum labreanum
	strain	Z
source_library	source_library_name
	vector_name
source_dna	source_dna_name	Mela_0001
	source_dna_number	4002219
	source_dna_type	Whole Genome
seq_project	project_number	4002219
	project_type	2006 CSP
	draft_analysis_group_des
	deadline	30-SEP-06
seq_library	library_name	SFCB
	library_type	18s ribosomal Eukarya
	sequencing_type	Ribosomal
	internal_customer	Ribosomal Sequencing
	re_array
	insert_size_type	small
	target_insert_size	.7
	plates_expected
	depth_target
	insert_user	dscott
	date_entered	13-JAN-06
seq_lib_vector	vector_name	pCR4-TOPO_eukarya
shadow_parent	library_name
account	account_no	625909
	account_name	Seq General, Program Management
account_group	account_group	SEQUENCING DEPT ACCOUNTS
institution	code_name
sample	sample_number	114427
	dna_received
	sample_description
	ribosomal_profile	Prokaryote

Processing Summary:

Reads Input: 192

	Read Pairing	Assemble	Qual Filters	Blast Filter	Chimera Checking
Passed	192	94	92	92	N/A
Failed	0	2	2	0	N/A

Contigs Output: 92

Number of Cluster by Size (Number of Members)

Size	Number of Clusters
33	1
18	1
13	1
10	1
4	2
3	1
2	1
1	5

Cluster Representatives Blast Hits

Cluster Rep ID	Pct-Id	Align len	Hit
CLUSTER0(33)_SFCB389	99.3	867	Candida austromarina#1773 bp##rna
	99.2	867	Candida sake#1772 bp##rna
	97.8	869	gi\|46405691\|gb\|AY520287.1\| Candida sp. BG02-6-6-1-10 18S ribosomal RNA gene, partial sequence
	97.6	871	Candida lyxosophila#1782 bp##rna
	97.6	867	gi\|54306483\|gb\|AY640182.1\| Candida sp. NRRL Y-27651 18S ribosomal RNA gene, partial sequence
CLUSTER0(33)_SFCB406	99.4	875	Candida austromarina#1773 bp##rna
	99.3	875	Candida sake#1772 bp##rna
	97.9	877	gi\|46405691\|gb\|AY520287.1\| Candida sp. BG02-6-6-1-10 18S ribosomal RNA gene, partial sequence
	97.7	879	Candida lyxosophila#1782 bp##rna
	97.7	875	gi\|54306483\|gb\|AY640182.1\| Candida sp. NRRL Y-27651 18S ribosomal RNA gene, partial sequence
CLUSTER0(33)_SFCB412	99.5	870	Candida austromarina#1773 bp##rna
	99.4	870	Candida sake#1772 bp##rna
	98.1	872	gi\|46405691\|gb\|AY520287.1\| Candida sp. BG02-6-6-1-10 18S ribosomal RNA gene, partial sequence
	97.8	874	Candida lyxosophila#1782 bp##rna
	97.8	870	gi\|54306483\|gb\|AY640182.1\| Candida sp. NRRL Y-27651 18S ribosomal RNA gene, partial sequence
CLUSTER1(18)_SFCB422	99.9	709	gi\|46405588\|gb\|AY520184.1\| Candida sp. BG02-7-21-004L-C-2 18S ribosomal RNA gene, partial sequence
	97.1	139	gi\|46405588\|gb\|AY520184.1\| Candida sp. BG02-7-21-004L-C-2 18S ribosomal RNA gene, partial sequence
	99.7	710	Candida haemulonii#1759 bp##rna
	97.8	139	Candida haemulonii#1759 bp##rna
	99.3	711	gi\|54306497\|gb\|AY640203.1\| Candida sp. NRRL Y-27702 18S ribosomal RNA gene, partial sequence
	99.2	131	gi\|54306497\|gb\|AY640203.1\| Candida sp. NRRL Y-27702 18S ribosomal RNA gene, partial sequence
	97.6	710	gi\|37933392\|gb\|AY242231.1\| Candida sp. BG01-7-24-009A-1-1 18S ribosomal RNA gene, partial sequence
	97.5	710	Candida tsuchiyae#1745 bp##rna
CLUSTER1(18)_SFCB434	99.9	709	gi\|46405588\|gb\|AY520184.1\| Candida sp. BG02-7-21-004L-C-2 18S ribosomal RNA gene, partial sequence
	97.8	137	gi\|46405588\|gb\|AY520184.1\| Candida sp. BG02-7-21-004L-C-2 18S ribosomal RNA gene, partial sequence
	99.7	710	Candida haemulonii#1759 bp##rna
	98.5	137	Candida haemulonii#1759 bp##rna
	99.3	711	gi\|54306497\|gb\|AY640203.1\| Candida sp. NRRL Y-27702 18S ribosomal RNA gene, partial sequence
	100	129	gi\|54306497\|gb\|AY640203.1\| Candida sp. NRRL Y-27702 18S ribosomal RNA gene, partial sequence
	97.6	710	gi\|37933392\|gb\|AY242231.1\| Candida sp. BG01-7-24-009A-1-1 18S ribosomal RNA gene, partial sequence
	88.4	129	gi\|37933392\|gb\|AY242231.1\| Candida sp. BG01-7-24-009A-1-1 18S ribosomal RNA gene, partial sequence
	97.5	710	Candida tsuchiyae#1745 bp##rna
	100	72	Candida tsuchiyae#1745 bp##rna
CLUSTER2(13)_SFCB410	99.5	853	gi\|27819259\|gb\|AY189655.1\| Uncultured fungus clone EarCan128 18S ribosomal RNA gene, partial sequence
	99.5	853	gi\|27819262\|gb\|AY189658.1\| Uncultured fungus clone EarCan131 18S ribosomal RNA gene, partial sequence
	99.4	853	gi\|27819272\|gb\|AY189668.1\| Uncultured fungus clone EarCan141 18S ribosomal RNA gene, partial sequence
	99.1	865	gi\|28076843\|gb\|AF530542.1\| Uncultured basidiomycete clone AT9-6 18S ribosomal RNA gene, partial sequence
	99.2	859	gi\|18025845\|gb\|AY046669.1\| Uncultured eukaryote isolate A1_E002 18S ribosomal RNA gene, partial sequence
CLUSTER2(13)_SFCB413	99.9	847	gi\|27819272\|gb\|AY189668.1\| Uncultured fungus clone EarCan141 18S ribosomal RNA gene, partial sequence
	99.8	847	gi\|27819259\|gb\|AY189655.1\| Uncultured fungus clone EarCan128 18S ribosomal RNA gene, partial sequence
	99.8	847	gi\|27819262\|gb\|AY189658.1\| Uncultured fungus clone EarCan131 18S ribosomal RNA gene, partial sequence
	99.8	847	gi\|27819263\|gb\|AY189659.1\| Uncultured fungus clone EarCan132 18S ribosomal RNA gene, partial sequence
	99.3	861	gi\|28076843\|gb\|AF530542.1\| Uncultured basidiomycete clone AT9-6 18S ribosomal RNA gene, partial sequence
CLUSTER5(10)_SFCB409	99.9	862	Chytridiomycetes sp.#1726 bp##rna
	99.6	546	gi\|6707256\|gb\|AH009052.1\|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
	100	280	gi\|6707256\|gb\|AH009052.1\|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
	99.6	545	gi\|6707184\|gb\|AF164301.1\|AF164301S1 Batrachochytrium dendrobatidis 18S ribosomal RNA gene, partial sequence
	93.2	606	gi\|49066425\|gb\|AY635826.1\| Entophlyctis helioformis isolate AFTOL-ID 40 18S ribosomal RNA gene, partial sequence
	91.3	698	Mortierella alpina#1907 bp##rna
CLUSTER5(10)_SFCB444	99.9	861	Chytridiomycetes sp.#1726 bp##rna
	99.6	545	gi\|6707256\|gb\|AH009052.1\|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
	100	280	gi\|6707256\|gb\|AH009052.1\|SEG_AF164301S Batrachochytrium dendrobatidis 18S ribosomal RNA and 18S ribosomal RNA genes, partial sequence
	99.6	544	gi\|6707184\|gb\|AF164301.1\|AF164301S1 Batrachochytrium dendrobatidis 18S ribosomal RNA gene, partial sequence
	93.2	606	gi\|49066425\|gb\|AY635826.1\| Entophlyctis helioformis isolate AFTOL-ID 40 18S ribosomal RNA gene, partial sequence
	91.3	698	Mortierella alpina#1907 bp##rna
CLUSTER11(4)_SFCB411	99.2	852	gi\|532607\|gb\|L24401.1\|LINRG18S Linum perenne L. 18S ribosomal RNA (18S rRNA) gene, 5' end
	99.2	852	Linum perenne#1736 bp##rna
	98.8	852	gi\|7595525\|gb\|AF207005.1\| Reinwardtia indica 18S ribosomal RNA gene, complete sequence
	98.8	852	Reinwardtia indica#1740 bp##rna
	98.5	852	gi\|60280248\|gb\|AY788150.1\| Durandea pentagyna 18S ribosomal RNA gene, partial sequence
CLUSTER4(4)_SFCB397	100	874	gi\|2576442\|gb\|AF026588.1\|AF026588 Stereum hirsutum 18S ribosomal RNA gene, partial sequence
	100	874	Stereum hirsutum#1777 bp##rna
	100	874	Stereum hirsutum#1777 bp##rna
	99.8	874	gi\|2576441\|gb\|AF026587.1\|AF026587 Stereum annosum 18S ribosomal RNA gene, partial sequence
	99.8	874	Stereum annosum#1802 bp##rna
CLUSTER8(3)_SFCB474	99.8	871	gi\|33334384\|gb\|AF548070.1\| Cladosporium cladosporioides strain ALI 50 18S ribosomal RNA gene, partial sequence
	99.8	871	gi\|33334385\|gb\|AF548071.1\| Cladosporium cladosporioides strain UPSC 1657 18S ribosomal RNA gene, partial sequence
	99.8	871	gi\|16233815\|gb\|AY016351.1\| Raciborskiomyces longisetosum 18S ribosomal RNA gene, partial sequence
	99.8	871	Raciborskiomyces longisetosum#1743 bp##rna
	99.8	863	gi\|18025874\|gb\|AY046698.1\| Uncultured eukaryote isolate A1_E031 18S ribosomal RNA gene, partial sequence
CLUSTER7(2)_SFCB386	100	862	gi\|13345002\|gb\|AF289654.1\|AF289654 Cf. Fusarium NRRL 26803 18S ribosomal RNA gene, partial sequence
	100	862	gi\|38201514\|gb\|AY357275.1\| Nectria curta strain UMB 39.01 18S ribosomal RNA gene, partial sequence
	100	862	gi\|38201517\|gb\|AY357278.1\| Nectria lugdunensis strain CS-950 18S ribosomal RNA gene, partial sequence
	99.9	862	gi\|11830871\|emb\|AJ301993.1\|MRO301993 Myrothecium roridum 18S rRNA gene, 5.8S rRNA gene, 28S rRNA gene (partial), internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), strain BBA 62764
	99.9	862	gi\|11830872\|emb\|AJ301994.1\|MRO301994 Myrothecium roridum 18S rRNA gene, 5.8S rRNA gene, 28S rRNA gene (partial), internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), strain BBA 63372
CLUSTER10(1)_SFCB462	96.1	712	Exobasidium rhododendri#1770 bp##rna
	92.2	103	Exobasidium rhododendri#1770 bp##rna
	95.9	712	Exobasidium vaccinii#1768 bp##rna
	92.2	102	Exobasidium vaccinii#1768 bp##rna
	95.4	710	gi\|3046819\|dbj\|D63929.1\|GRAJCMB Graphiola cylindrica gene for 18S rRNA, partial sequence, strain: IAM14327
	98.6	74	gi\|3046819\|dbj\|D63929.1\|GRAJCMB Graphiola cylindrica gene for 18S rRNA, partial sequence, strain: IAM14327
	95.4	710	Graphiola cylindrica#1763 bp##rna
	98.6	74	Graphiola cylindrica#1763 bp##rna
	94.5	712	gi\|9967920\|emb\|AJ271382.1\|EVA271382 Tilletiopsis washingtonensis partial 18S rRNA gene, strain RBF1008 = PB393
	93.1	102	gi\|9967920\|emb\|AJ271382.1\|EVA271382 Tilletiopsis washingtonensis partial 18S rRNA gene, strain RBF1008 = PB393
CLUSTER12(1)_SFCB451	93.5	878	gi\|4210554\|dbj\|AB016584.1\| Candida palmioleophila 18S rRNA gene, partial sequence
	93.5	878	Candida palmioleophila#1782 bp##rna
	93.6	878	Candida fluviatilis#1782 bp##rna
	93.4	879	Candida palmioleophila#1783 bp##rna
	92.8	879	Candida fermenticarens#1783 bp##rna
CLUSTER3(1)_SFCB401	99.8	961	Methanocorpusculum labreanum str. DSM 4855 AY260436.1 (Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocorpusculaceae)
	99.7	961	Methanocorpusculum parvum str. DSM 3828 AY260435.1 (Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocorpusculaceae)
	99.3	961	Methanocorpusculum sp. str. MSP AY260434.1 (Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocorpusculaceae)
	99.3	961	-temperature biodegraded Canadian oil reservoir clone PL-38A8 AY570660.1 (Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocorpusculaceae)
	99.1	961	-temperature biodegraded Canadian oil reservoir clone PL-21A9 AY570676.1 (Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanocorpusculaceae)
CLUSTER6(1)_SFCB443	99.9	872	gi\|451837\|gb\|U05201.1\|PHU05201 Pleospora herbarum DAOM 150679 nuclear 18S ribosomal RNA gene, partial sequence
	99.9	872	gi\|16233821\|gb\|AY016352.1\| Setosphaeria monoceras 18S ribosomal RNA gene, partial sequence
	99.9	872	Setosphaeria monoceras#1753 bp##rna
	99.9	872	Cochliobolus sativus#1727 bp##rna
	99.9	872	Pleospora herbarum#1780 bp##rna
CLUSTER9(1)_SFCB465	99.8	851	gi\|46405612\|gb\|AY520208.1\| Basidiomycete yeast sp. BG02-5-23-001-C2 18S ribosomal RNA gene, partial sequence
	98.8	851	gi\|995464\|dbj\|D31655.1\|CPCSSRRGH Cryptococcus albidus 18S rRNA gene
	98.8	851	Cryptococcus albidus#1746 bp##rna
	97.8	851	Filobasidium floriforme#1758 bp##rna
	97.5	851	gi\|24742990\|emb\|AJ515167.1\|UBA515167 Uncultured soil basidiomycete partial 18S rRNA gene, clone r90-02