genelib report for 4002524, SFNF

Library Information (from Project Tracking System DB):

bio_class_genus_species	bio_classification_type	Single Organism
	bio_classification_name	Sphingomonas wittichii RW1
	genus_species	Sphingomonas wittichii
	strain	RW1
source_library	source_library_name
	vector_name
source_dna	source_dna_name	Spwi_0001
	source_dna_number	4002524
	source_dna_type	Whole Genome
seq_project	project_number	4002524
	project_type	2006 Microbe Projects
	draft_analysis_group_des
	deadline	30-SEP-06
seq_library	library_name	SFNF
	library_type	16s ribosomal Bacteria
	sequencing_type	Ribosomal
	internal_customer	Ribosomal Sequencing
	re_array
	insert_size_type	small
	target_insert_size	1.5
	plates_expected
	depth_target
	insert_user	dscott
	date_entered	14-FEB-06
seq_lib_vector	vector_name	pCR4-TOPO_eubacteria
shadow_parent	library_name
account	account_no	625909
	account_name	Seq General, Program Management
account_group	account_group	SEQUENCING DEPT ACCOUNTS
institution	code_name
sample	sample_number	114716
	dna_received
	sample_description
	ribosomal_profile	Eukaryote

Processing Summary:

Reads Input: 192

	Read Pairing	Assemble	Qual Filters	Blast Filter	Chimera Checking
Passed	192	92	90	90	N/A
Failed	0	4	2	0	N/A

Contigs Output: 90

Number of Cluster by Size (Number of Members)

Size	Number of Clusters
83	1
1	7

Cluster Representatives Blast Hits

Cluster Rep ID	Pct-Id	Align len	Hit
CLUSTER0(83)_SFNF402	99.6	1452	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.6	1452	decayed velvetleaf seed clone S1-10-CL1 AY728073.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1452	soil contaminated with polyaromatic hydrocarbons clone SAL2d19 AY699585.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.3	1452	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.3	1452	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER0(83)_SFNF452	99.8	1448	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.7	1451	decayed velvetleaf seed clone S1-10-CL1 AY728073.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.6	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d19 AY699585.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER0(83)_SFNF455	99.7	1448	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.7	1451	decayed velvetleaf seed clone S1-10-CL1 AY728073.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.5	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d19 AY699585.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER0(83)_SFNF477	99.8	1448	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.7	1451	decayed velvetleaf seed clone S1-10-CL1 AY728073.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.6	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d19 AY699585.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	99.4	1451	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER1(1)_SFNF444	91.7	1397	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	92.1	1364	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	91.6	1398	decayed velvetleaf seed clone S1-10-CL1 AY728073.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	92.5	1326	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	92.5	1326	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER2(1)_SFNF392	96.1	1253	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.9	1254	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.5	1222	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.5	1222	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.4	1222	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER3(1)_SFNF419	96.3	1369	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.7	1405	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1326	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1326	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.6	1326	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER4(1)_SFNF424	94.1	1320	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	94.1	1320	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	94.1	1320	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	94	1320	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	94	1320	soil contaminated with polyaromatic hydrocarbons clone NAP2d3 AY699587.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER5(1)_SFNF415	96.7	1377	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1377	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1374	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1377	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	96.7	1377	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER6(1)_SFNF408	93.4	1352	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	93.4	1352	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	93.4	1352	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	93.3	1352	Wautersia eutropha str. KT1 AB015605.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	93.3	1352	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
CLUSTER7(1)_SFNF420	95.3	1203	Mammoth cave clone CCMC0 AY221074.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.3	1203	Wautersia eutropha str. c32 AB167205.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.3	1203	Ralstonia sp. str. c49 AB167214.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.3	1203	soil contaminated with polyaromatic hydrocarbons clone SAL2d1 AY699589.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)
	95.3	1203	Cupriavidus necator M32021.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Betaproteobacteria; Burkholderiales; Ralstoniaceae)