genelib report for 4002680, SFCW

Library Information (from Project Tracking System DB):

bio_class_genus_species	bio_classification_type	Single Organism
	bio_classification_name	Pyrobaculum calidifontis JCM #11548
	genus_species	Pyrobaculum calidifontis
	strain	JCM #11548
source_library	source_library_name
	vector_name
source_dna	source_dna_name	Pyca_0001
	source_dna_number	4002680
	source_dna_type	Whole Genome
seq_project	project_number	4002680
	project_type	2006 CSP
	draft_analysis_group_des
	deadline	30-SEP-06
seq_library	library_name	SFCW
	library_type	18s ribosomal Eukarya
	sequencing_type	Ribosomal
	internal_customer	Ribosomal Sequencing
	re_array
	insert_size_type	small
	target_insert_size	.7
	plates_expected
	depth_target
	insert_user	htice
	date_entered	20-JAN-06
seq_lib_vector	vector_name	pCR4-TOPO_eukarya
shadow_parent	library_name
account	account_no	625909
	account_name	Seq General, Program Management
account_group	account_group	SEQUENCING DEPT ACCOUNTS
institution	code_name
sample	sample_number	114892
	dna_received	20-JAN-06
	sample_description
	ribosomal_profile	Prokaryote

Processing Summary:

Reads Input: 192

	Read Pairing	Assemble	Qual Filters	Blast Filter	Chimera Checking
Passed	192	94	86	86	N/A
Failed	0	2	8	0	N/A

Contigs Output: 86

Number of Cluster by Size (Number of Members)

Size	Number of Clusters
28	1
21	1
12	1
9	2
4	1
2	1
1	1

Cluster Representatives Blast Hits

Cluster Rep ID	Pct-Id	Align len	Hit
CLUSTER1(28)_SFCW403	91.1	485	gi\|4579685\|dbj\|AB000912.1\| Tridacna hemolymph apicomplexan gene for 18S rRNA
	91.1	485	Tridacna hemolymph#1786 bp##rna
	90.8	490	gi\|38567610\|emb\|AJ566172.1\|CSP566172 Cryptomonas sp. M0741 nucleomorph 18S rRNA gene, strain M0741
	90.3	493	gi\|472323\|gb\|L28812.1\|CHORREB Chilomonas paramecium nuclomorph 18S ribosomal RNA, complete sequence
	91.1	450	gi\|39578706\|gb\|AY426935.1\| Uncultured marine eukaryote clone BL010625.41 18S ribosomal RNA gene, partial sequence
CLUSTER1(28)_SFCW409	91.1	485	gi\|4579685\|dbj\|AB000912.1\| Tridacna hemolymph apicomplexan gene for 18S rRNA
	91.1	485	Tridacna hemolymph#1786 bp##rna
	90.8	490	gi\|38567610\|emb\|AJ566172.1\|CSP566172 Cryptomonas sp. M0741 nucleomorph 18S rRNA gene, strain M0741
	90.8	490	gi\|78183182\|emb\|AM051201.1\| Cryptomonas sp. M0741 partial 18S rRNA gene, strain M0741
	90.3	493	gi\|472323\|gb\|L28812.1\|CHORREB Chilomonas paramecium nuclomorph 18S ribosomal RNA, complete sequence
CLUSTER1(28)_SFCW420	90.9	485	gi\|4579685\|dbj\|AB000912.1\| Tridacna hemolymph apicomplexan gene for 18S rRNA
	90.9	485	Tridacna hemolymph#1786 bp##rna
	90.6	490	gi\|38567610\|emb\|AJ566172.1\|CSP566172 Cryptomonas sp. M0741 nucleomorph 18S rRNA gene, strain M0741
	90.1	493	gi\|472323\|gb\|L28812.1\|CHORREB Chilomonas paramecium nuclomorph 18S ribosomal RNA, complete sequence
	90.9	450	gi\|39578706\|gb\|AY426935.1\| Uncultured marine eukaryote clone BL010625.41 18S ribosomal RNA gene, partial sequence
CLUSTER0(21)_SFCW410	94.6	874	gi\|52219458\|gb\|AY705970.1\| Pycnoporus sp. ZW02.30 isolate AFTOL-ID 772 18S ribosomal RNA gene, partial sequence
	94.4	874	gi\|2576441\|gb\|AF026587.1\|AF026587 Stereum annosum 18S ribosomal RNA gene, partial sequence
	94.4	874	Stereum annosum#1802 bp##rna
	94.4	874	Stereum annosum#1833 bp##rna
	94.4	874	Dentocorticium sulphurellum#1756 bp##rna
CLUSTER0(21)_SFCW428	94.5	872	gi\|52219458\|gb\|AY705970.1\| Pycnoporus sp. ZW02.30 isolate AFTOL-ID 772 18S ribosomal RNA gene, partial sequence
	94.5	872	Fomes fomentarius#1803 bp##rna
	94.5	872	Fomes fomentarius#1803 bp##rna
	94.3	872	gi\|2576441\|gb\|AF026587.1\|AF026587 Stereum annosum 18S ribosomal RNA gene, partial sequence
	94.3	872	Stereum annosum#1802 bp##rna
CLUSTER2(12)_SFCW411	98.9	873	gi\|2576425\|gb\|AF026571.1\|AF026571 Lentinus tigrinus 18S ribosomal RNA gene, partial sequence
	99	873	gi\|32187381\|gb\|AY293143.1\| Parmastomyces transmutans 18S ribosomal RNA gene, partial sequence
	98.9	873	gi\|50346092\|gb\|AY665780.1\| Grifola sordulenta isolate AFTOL-ID 562 18S ribosomal RNA gene, partial sequence
	98.9	873	gi\|52219457\|gb\|AY705969.1\| Ganoderma tsugae isolate AFTOL-ID 771 18S ribosomal RNA gene, partial sequence
	98.9	873	Lentinus tigrinus#1754 bp##rna
CLUSTER2(12)_SFCW445	98.8	863	gi\|2576425\|gb\|AF026571.1\|AF026571 Lentinus tigrinus 18S ribosomal RNA gene, partial sequence
	99	863	gi\|32187381\|gb\|AY293143.1\| Parmastomyces transmutans 18S ribosomal RNA gene, partial sequence
	98.8	863	gi\|50346092\|gb\|AY665780.1\| Grifola sordulenta isolate AFTOL-ID 562 18S ribosomal RNA gene, partial sequence
	98.8	863	gi\|52219457\|gb\|AY705969.1\| Ganoderma tsugae isolate AFTOL-ID 771 18S ribosomal RNA gene, partial sequence
	98.8	863	Lentinus tigrinus#1754 bp##rna
CLUSTER4(9)_SFCW429	99.1	874	gi\|7578498\|gb\|AF132890.1\|AF132890 Kerria japonica 18S ribosomal RNA gene, partial sequence
	99.1	874	Kerria japonica#1740 bp##rna
	99	873	gi\|20514383\|gb\|AF502596.1\| Strasburgeria robusta 18S ribosomal RNA gene, partial sequence
	99	873	Strasburgeria robusta#1717 bp##rna
	98.9	873	gi\|6689360\|emb\|AJ235978.1\|STR235978 Staphylea trifolia 18S rRNA gene
CLUSTER5(9)_SFCW474	99.6	682	Pyrobaculum neutrophilum X81886.1 (Archaea; Thermoprotei; Thermoproteales; Thermoproteaceae)
	99.6	682	Pyrobaculum calidifontis str. VA1 AB078332.1 (Archaea; Thermoprotei; Thermoproteales; Thermoproteaceae)
	99	682	Pyrobaculum sp. str. WIJ3 AJ277125.1 (Archaea; Thermoprotei; Thermoproteales; Thermoproteaceae)
	98.5	682	Pyrobaculum organotrophum str. JCM 9190 AB063647.1 (Archaea; Thermoprotei; Thermoproteales; Thermoproteaceae)
	98.2	682	Pyrobaculum islandicum L07511.1 (Archaea; Thermoprotei; Thermoproteales; Thermoproteaceae)
CLUSTER3(4)_SFCW386	100	848	gi\|27819259\|gb\|AY189655.1\| Uncultured fungus clone EarCan128 18S ribosomal RNA gene, partial sequence
	100	848	gi\|27819262\|gb\|AY189658.1\| Uncultured fungus clone EarCan131 18S ribosomal RNA gene, partial sequence
	99.5	862	gi\|28076843\|gb\|AF530542.1\| Uncultured basidiomycete clone AT9-6 18S ribosomal RNA gene, partial sequence
	99.9	848	gi\|27819272\|gb\|AY189668.1\| Uncultured fungus clone EarCan141 18S ribosomal RNA gene, partial sequence
	99.6	854	gi\|18025845\|gb\|AY046669.1\| Uncultured eukaryote isolate A1_E002 18S ribosomal RNA gene, partial sequence
CLUSTER6(2)_SFCW433	99.9	863	gi\|29170579\|dbj\|AB106650.1\| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
	99.7	863	gi\|31745028\|dbj\|AB112030.1\| Verticillium fungicola var. flavidum genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
	99.7	863	gi\|23092303\|gb\|AY129551.1\| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
	99.7	863	gi\|31559706\|dbj\|AB111495.1\| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
	99.7	863	gi\|74267366\|dbj\|AB233337.1\| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
CLUSTER7(1)_SFCW449	99.9	859	gi\|28412368\|gb\|AY190268.1\| Dothideomycete sp. G6-R56 18S ribosomal RNA gene, partial sequence
	99.9	859	gi\|28412369\|gb\|AY190269.1\| Dothideomycete sp. G6-S57 18S ribosomal RNA gene, partial sequence
	99.9	859	gi\|28412372\|gb\|AY190272.1\| Dothideomycete sp. G9-S50 18S ribosomal RNA gene, partial sequence
	99.9	859	gi\|28412373\|gb\|AY190273.1\| Dothideomycete sp. G9-S53 18S ribosomal RNA gene, partial sequence
	99.9	859	gi\|30526078\|gb\|AY275186.1\| Dothideomycete sp. P 18S ribosomal RNA gene, partial sequence