genelib report for 4002720, SFGA

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_namePseudomonas putida W619
genus_speciesPseudomonas putida
strainW619
source_librarysource_library_name
vector_name
source_dnasource_dna_namePspu_0002
source_dna_number4002720
source_dna_typeWhole Genome
seq_projectproject_number4002720
project_type2006 Microbe Projects
draft_analysis_group_des
deadline30-SEP-06
seq_librarylibrary_nameSFGA
library_type18s ribosomal Eukarya
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size.7
plates_expected
depth_target
insert_userhtice
date_entered25-JAN-06
seq_lib_vectorvector_namepCR4-TOPO_eukarya
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number114932
dna_received25-JAN-06
sample_description
ribosomal_profileProkaryote

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192939292N/A
Failed0310N/A

Contigs Output: 92

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
901
21

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(90)_SFGA399100873gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.8873gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.8873gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.8873gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99.7873gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER0(90)_SFGA40299.8874gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.5874gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.5874gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.5874gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99.4874gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER0(90)_SFGA42099.9857gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.6857gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.6857gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.6857gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99.5857gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER0(90)_SFGA426100871gi|29170579|dbj|AB106650.1| Engyodontium album gene for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.8871gi|23092303|gb|AY129551.1| Verticillium sp. EndF3 18S ribosomal RNA gene, partial sequence
99.8871gi|31559706|dbj|AB111495.1| Torrubiella confragosa genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence
99.8871gi|74267366|dbj|AB233337.1| Paecilomyces farinosus genes for 18S ribosomal RNA, internal transcribed spacer 1, 5.8S ribosomal RNA, internal transcribed spacer 2, 28S ribosomal RNA, partial and complete sequence, strain: BCMU IF07
99.7871gi|11125692|dbj|AB032475.1| Paecilomyces fumoso-roseus gene for 18S rRNA, partial sequence
CLUSTER1(2)_SFGA46499.7946Pseudomonas putida str. Biotype ICMP 2758; ATCC 12633; NCIB 9494 AJ308313.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Pseudomonadaceae)
99.7946Pseudomonas sp. str. ML2 AF378011.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Pseudomonadaceae)
99.7946Pseudomonas sp. str. Fa27 AY131221.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Pseudomonadaceae)
99.7946Pseudomonas sp. str. Fa24 AY131219.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Pseudomonadaceae)
99.7946Pseudomonas parafulva str. AJ 2130 AB060133.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Pseudomonadaceae)