genelib report for 4002730, SFGU

Library Information (from Project Tracking System DB):

bio_class_genus_speciesbio_classification_typeSingle Organism
bio_classification_nameEscherichia coli B
genus_speciesEscherichia coli
strainB
source_librarysource_library_name
vector_name
source_dnasource_dna_nameEsco_0009
source_dna_number4002730
source_dna_typeWhole Genome
seq_projectproject_number4002730
project_type2006 Microbe Projects
draft_analysis_group_des
deadline30-SEP-06
seq_librarylibrary_nameSFGU
library_type16s ribosomal Bacteria
sequencing_typeRibosomal
internal_customerRibosomal Sequencing
re_array
insert_size_typesmall
target_insert_size1.5
plates_expected
depth_target
insert_userhtice
date_entered02-FEB-06
seq_lib_vectorvector_namepCR4-TOPO_eubacteria
shadow_parentlibrary_name
accountaccount_no625909
account_nameSeq General, Program Management
account_groupaccount_groupSEQUENCING DEPT ACCOUNTS
institutioncode_name
samplesample_number114947
dna_received26-JAN-06
sample_description
ribosomal_profileProkaryote

Processing Summary:

Reads Input: 192

Read PairingAssembleQual FiltersBlast FilterChimera Checking
Passed192818181N/A
Failed01500N/A

Contigs Output: 81

Number of Cluster by Size (Number of Members)

SizeNumber of Clusters
771
21
12

Cluster Representatives Blast Hits

Cluster Rep IDPct-IdAlign lenHit
CLUSTER0(77)_SFGU39699.81464Escherichia coli str. C2 AF403733.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.71464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(77)_SFGU4341001464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
1001464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
1001464Escherichia coli V00348.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
1001464Escherichia coli str. K12 U00096.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91464Escherichia coli O157:H7 str. RIMD0509952 AB035925.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(77)_SFGU44599.91464Escherichia coli str. CFT073 AE016767.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli str. CFT073 AE016770.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Shigella flexneri X96963.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.81464Escherichia coli str. K-12 M87049.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER0(77)_SFGU44799.51465Shigella flexneri X96963.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.41465Shigella sonnei X96964.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.91429phylotype OTU-1 swine intestine clone p-5145-2Wb3 AF371936.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.41465Shigella flexneri 2a str. 301 AE005674.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99.31465Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER3(2)_SFGU42194.11442Escherichia coli AK108 AY098487.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
90.81442USA:New York isolate str. KN4 AF084835.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
98.7749Bor Khlueng hot spring clone PK81 AY555794.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.4636Bor Khlueng hot spring clone PK81 AY555794.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
99723phylotype OTU-1 swine intestine clone p-5145-2Wb3 AF371936.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
93.6590phylotype OTU-1 swine intestine clone p-5145-2Wb3 AF371936.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
98.9726Escherichia coli str. K12 D83536.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
92.4590Escherichia coli str. K12 D83536.2 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER1(1)_SFGU45591.81214Shigella flexneri X96963.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.81214Shigella sonnei X96964.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.81214Escherichia coli J01859.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.81214Escherichia coli A14565.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.81214Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
CLUSTER2(1)_SFGU44691.91391Shigella flexneri X96963.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.91391Shigella sonnei X96964.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.91391Escherichia coli J01859.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.91391Escherichia coli A14565.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)
91.91391Escherichia coli J01695.1 (Bacteria; Proteobacteria; Gamma(beta)proteobacteria; Enterobacteriales)