Command line: /usr/common/jgi/assemblers/spades/2.5.0/bin/spades.py -o spades2.5 --phred-offset 33 -t 24 -m 240 --sc --careful --12 /house/groupdirs/QAQC/rqc_archive/jigsaw/in-progress/7220.2.64196.GTCCGC_single_cell_20130903111000/contam_filter/7220.2.64196.GTCCGC.contam.artifact.clean.subsample.fastq

System information:
  SPAdes version: 2.5.0

  Python version: 2.7.4
  OS: Linux-2.6.32-5-amd64-x86_64-with-debian-6.0.7

Output dir: /global/projectb/scratch/aclum/gutless_worm/7-alpha/PPPC/spades_troubleshooting/spades2.5
Mode: read error correction and assembling
Debug mode turned OFF

Dataset parameters:
  Single-cell mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/house/groupdirs/QAQC/rqc_archive/jigsaw/in-progress/7220.2.64196.GTCCGC_single_cell_20130903111000/contam_filter/7220.2.64196.GTCCGC.contam.artifact.clean.subsample.fastq']
      single reads: not specified
Read error correction parameters:
  Dir for temp files: /global/projectb/scratch/aclum/gutless_worm/7-alpha/PPPC/spades_troubleshooting/spades2.5/corrected/tmp
  Iterations: 1
  PHRED offset: 33
  Corrected reads will be compressed (with gzip)
Assembly parameters:
  k: [21, 33, 55]
Other parameters:
  Threads: 24
  Memory limit (in Gb): 240