/*
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 * and open the template in the editor.
 */


import java.io.BufferedReader;
import java.io.BufferedWriter;
import java.io.File;
import java.io.FileReader;
import java.io.FileWriter;
import java.io.IOException;
import java.util.ArrayList;

/**
 *
 * @author gapavlop
 */
public class Fasta2Tab {

    /**
     * @param args the command line arguments
     */
    public static void main(String[] args) {
        convert_file_to_fastafile(args[0]);
    }


    static void convert_file_to_fastafile(String filename) {
        try {
            FileReader fileReader = new FileReader(filename);
            BufferedReader bufferedReader = new BufferedReader(fileReader);
            String line;
            StringBuffer buf = new StringBuffer();
            int cnt = 0;
            while ((line = bufferedReader.readLine()) != null) {
            if(line.length()>=2){
                if(line.startsWith(">"))
		{
                        if(cnt==0){
		 	System.out.print(line.replaceFirst(">","")+"\t");
			cnt++;
			}
			else{
			System.out.print("\n"+line.replaceFirst(">","")+"\t");
			}
		}
		else
                {
		 System.out.print(line);
                }
	    }
	}
        System.out.print("\n");
	fileReader.close();
        } catch (Exception e) {
            e.printStackTrace();
        }
    }


    private static ArrayList<String> getParts(String string, int partitionSize) {

        ArrayList<String> parts = new ArrayList();
        int len = string.length();
        if (len <= partitionSize) {
            parts.add(string);
        } else {
            for (int i = 0; i < len; i += partitionSize) {
                parts.add(string.substring(i, Math.min(len, i + partitionSize)));
            }
        }

        return parts;
    }

}


