Command line: /home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/.pixi/envs/default/bin/spades.py	--meta	--12	/home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/data/all_reads.fastq.gz	-o	/home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/data/results/metaspades	-t	6	-m	5	-k	21,33,55,77,99,121	--only-assembler	

System information:
  SPAdes version: 3.15.5
  Python version: 3.11.13
  OS: Linux-6.8.0-84-generic-x86_64-with-glibc2.39

Output dir: /home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/data/results/metaspades
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Metagenomic mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: not specified
      right reads: not specified
      interlaced reads: ['/home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/data/all_reads.fastq.gz']
      single reads: not specified
      merged reads: not specified
Assembly parameters:
  k: [21, 33, 55, 77, 99, 121]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /home/sroux/Store/Synthese/Presentations/2025/10.France/AI_TP/hands-on/demo_binning/data/results/metaspades/tmp
  Threads: 6
  Memory limit (in Gb): 5

